Natural variation in rice starch synthase IIa affects enzyme and starch properties

Functional Plant Biology

Volumn 31, Issue 7, 2004, Pages 671-684

  Umemoto, Takayuki ^a   Aoki, Noriaki ^a   Lin, Hongxuan ^b,c   Nakamura, Yasunori ^d   Inouchi, Naoyoshi ^e   Sato, Youichiro ^f   Yano, Masahiro ^b   Hirabayashi, Hideyuki ^a   Maruyama, Sachio ^a,g  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^d AKITA PREFECTURAL UNIVERSITY   (Japan)

^e FUKUYAMA UNIVERSITY   (Japan)

^f RESEARCH INSTITUTE FOR HUMANITY AND NATURE   (Japan)

^g UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

alk; Alkali disintegration; Amylopectin; Rice; Starch synthase

Indexed keywords

NATURAL VARIATION; NEAR-ISOGENIC LINES (NIL);

AMINO ACIDS; CROPS; ENZYME KINETICS; GENES; STARCH;

ENZYMES;

ENZYME; RICE; STARCH;

AMINO ACIDS; AMYLOPECTIN; ENDOSPERM; ENZYMES; GENES; RICE;

EMBRYOPHYTA; ORYZA SATIVA;

EID: 4344568124     PISSN: 14454408     EISSN: None     Source Type: Journal    
DOI: 10.1071/FP04009     Document Type: Article

References (54)

1. Aggarwal RK, Brar DS, Nandi S, Huang N, Khush GS (1999) Phylogenetic relationships among Oryza species revealed by AFLP markers. Theoretical and Applied Genetics 98, 1320-1328. doi: 10.1007/S001220051198
2. Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, Park WD (1997) Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germplasm. Theoretical and Applied Genetics 94, 773-781. doi: 10.1007/S001220050477
3. Bhattacharya M, Zee SY, Corke H (1999) Physicochemical properties related to quality of rice noodles. Cereal Chemistry 76, 861-867.
4. Cai X, Wang Z, Xing Y, Zhang J, Hong M (1998) Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content. The Plant Journal 14, 459-465. doi: 10.1046/J.1365-313X.1998.00126.X
5. Commuri PD, Keeling PL (2001) Chain-length specificities of maize starch synthase I enzyme: studies of glucan affinity and catalytic properties. The Plant Journal 25, 475-486. doi: 10.1046/J.1365-313X.2001.00955.X
6. Cooke D, Gidley MJ (1992) Loss of crystalline and molecular order during starch gelatinisation: origin of the enthalpic transition. Carbohydrate Research 227, 103-112. doi: 10.1016/0008-6215(92)85063-6
7. Craig J, Lloyd JR, Tomlinson K, Barber L, Edwards A, Wang TL, Martin C, Hedley CL, Smith AM (1998) Mutations in the gene encoding starch synthase II profoundly alter amylopectin structure in pea embryos. The Plant Cell 10, 413-426. doi: 10.1105/TPC.10.3.413
8. Denyer K, Sidebottom C, Hylton CM, Smith AM (1993) Soluble isoforms of starch synthase and starch-branching enzyme also occur within starch granules in developing pea embryos. The Plant Journal 4, 191-198. doi: 10.1046/J.1365-313X. 1993.04010191.X
9. Denyer K, Hylton CM, Jenner CF, Smith AM (1995) Identification of multiple isoforms of soluble and granule-bound starch synthase in developing wheat endosperm. Planta 196, 256-265.
10. Doehlert DC, Kuo TM (1993) Characteristics of carbohydrate metabolism in sweet corn (sugary-1) endosperms. Journal of American Society of Hortical Science 118, 661-666.
11. Domon E, Fujita M, Ishikawa N (2002) The insertion/deletion polymorphisms in the waxy gene of barley genetic resources from East Asia. Theoretical and Applied Genetics 104, 132-138. doi: 10.1007/S001220200016
12. Edwards A, Fulton DC, Hylton CM, Jobling SA, Gidley M, Rossner U, Martin C, Smith AM (1999) combined reduction in activity of starch synthase II and III of potato has novel effects on the starch of tubers. The Plant Journal 17, 251-261. doi: 10.1046/J.1365-313X.1999.00371.X
13. Gidley M, Bulpin PV (1987) Crystallisation of malto-oligosaccharides as models of the crystalline forms of starch: minimum chain-length requirement for the formation of double helices. Carbohydrate Research 161, 291-300. doi: 10.1016/80008-6215(00)90086-7
14. Hanashiro I, Abe J, Hizukuri S (1996) A periodic distribution of the chain length of amylopectin as revealed by high-performance anion-exchange chromatography. Carbohydrate Research 283, 151-159. doi: 10.1016/0008-6215(95) 00408-4
15. 2 population. Genetics 148, 419-494.
16. Hirano HY, Eiguchi M, Sano Y (1998) A single base change altered the regulation of the waxy gene at the posttranscriptional level during the domestication of rice. Molecular Biology and Evolution 15, 978-987.
17. Imparl-Radosevich JM, Keeling PL, Guan H (1999) Essential arginine residues in maize starch synthase IIa are involved in both ADP-glucose and primer binding. FEBS Letters 457, 357-362. doi: 10.1016/S0014-5793(99)01066-2
18. Inouchi N, Glover DV, Sugimoto Y, Fuwa H (1991a) DSC characteristics of gelatinization of starches of single-, double-, and triple-mutants and their normal counterpart in the inbred Oh43 maize (Zea mays L.) background. Starch 43, 468-472.
19. Inouchi N, Glover DV, Sugimoto Y, Fuwa H (1991b) DSC characteristics of retrograded starches of single-, double-, and triple-mutants and their normal counterpart in the inbred Oh43 maize (Zea mays L.) background. Starch 43, 473-477.
20. Isshiki M, Morino K, Nakajima M, Okagaki RJ, Wessler SR, Izawa T, Shimamoto K (1998) A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron. The Plant Journal 15, 133-138. doi: 10.1046/J.1365-313X.1998.00189.X
21. James MG, Robertson DS, Myers AM (1995) Characterization of the maize gene sugary 1, a determinant of starch composition in kernels. The Plant Cell 7, 417-429. doi: 10.1105/TPC.7.4.417
22. Jane J, Chen YY, Lee LF, Mcpherson AE, Wong KS, Radosavljevic M, Kasemsuwan T (1999) Effects of amylopectin branch chain length and amylose content on the gelatinazation and pasting properties of starch. Cereal Chemistry 76, 629-637.
23. Jobling SA, Westcott RJ, Tayal A, Jeffcoat R, Schwall GP (2002) Production of a freeze-thaw-stable potato starch by antisense inhibition of three starch synthase genes. Nature Biotechnology 20, 295-299. doi: 10.1038/NBT0302-295
24. Juliano BO (1998) Varietal inpact on rice quality. Cereal Foods World 43, 207-222.
25. Kudo M (1968) Genetical and thremmatological studies of characters, physiological or ecological, in the hybrids between ecological rice groups. Bulletin of National Institute of Agricultural Science.Series D 19, 1-84.
26. Li Z, Chu X, Mouille G, Yan L, Kosar-Hashemi B, et al. (1999) The localization and expression of the class II starch synthases of wheat. Plant Physiology 120, 1147-1156. doi: 10.1104/PP.120.4.1147
27. Little RR, Hilder GB, Dawson EH (1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chemistry 35, 111-126.
28. Moates KL, Noel TR, Parker R, Ring SG (1997) The effect of chain length and solvent interactions on the dissolution of the B-type crystalline polymorph of amylose in water. Carbohydrate Research 298, 327-333. doi: 10.1016/80008-6215(96)00316-3
29. Monna L, Lin HX, Kojima S, Sasaki T, Yano M (2002) Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice. Theoretical and Applied Genetics 104, 772-778. doi: 10.1007/S00122-001-0813-0
30. Morell MK, Kosar-Hashemi B, Cmiel M, Samuel MS, Chandler P, Rahman S, Buleon A, Batey IL, Li Z (2003) Barley sex6 mutants lack starch synthase IIa activity and contain a starch with novel properties. The Plant Journal 34, 173-185.
31. Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research 8, 4321-4325.
32. Nakamura Y (2002) Towards a better understanding of the metabolic system for amylopectin biosynthesis in plants: rice endosperm as a model tissue. Plant and Cell Physiology 43, 718-725. doi: 10.1093/PCP/PCF091
33. Nakamura T, Yamamori M, Hirano H, Hidaka S, Nagamine T (1995) Production of waxy (amylose-free) wheats. Molecular and General Genetics 248, 253-259.
34. Nakamura Y, Nagamura Y, Kurata N, Minobe Y (1994) Linkage localization of the starch branching enzyme I (Q-enzyme I) gene in rice. Theoretical and Applied Genetics 89, 859-860.
35. Nakamura Y, Kubo A, Shimamune T, Matsuda T, Harada K, Satoh H (1997) Correlation between activities of starch debranching enzyme and α polyglucan structure in endosperm of sugary-1 mutants of rice. The Plant Journal 12, 143-153. doi: 10.1046/J.1365-313X.1997.12010143.X
36. Nakamura Y, Sakurai A, Inaba Y, Kimura K, Iwasawa N, Nagamine T (2002) The fine structure of amylopectin in endosperm from Asian cultivated rice can be largely classified into two classes. Starch 54, 117-131. doi: 10.1002/1521-379X(200204)54:3/4〈117::A1D-STAR117〉3.0.CO;2-2
37. Nichols DJ, Keeling PL, Spalding M, Guan H (2000) Involvement of conserved aspartate and glutamate residues in the catalysis and substrate binding of maize starch synthase. Biochemistry 39, 7820-7825. doi: 10.1021/BI000407G
38. Okagaki RJ, Wessler SR (1988) Comparison of non-mutant and mutant waxy genes in rice and maize. Genetics 120, 1137-1143.
39. Okamoto K, Kobayashi K, Hirasawa H, Umemoto T (2002) Structural differences in amylopectin affect waxy rice processing. Plant Production Science 5, 45-50.
40. Patron NJ, Smith AM, Fahy BF, Hylton CM, Naldrett MJ, Rossnagel BG, Denyer K (2002) The altered pattern of amylose accumulation in the endosperm of low-amylose barley cultivars in attributable to a single mutant allele of granule-bound starch synthase I with a deletion in the 5′-non-coding region. Plant Physiology 130, 190-198. doi: 10.1104/PP.005454
41. Rahman S, Kosar-Hashemi B, Samuel M, Hill A, Abbott DC, Skerritt JH, Preiss J, Appels R, Morell M (1995) The major proteins of wheat endosperm starch granules. Australian Journal of Plant Physiology 22, 793-803.
42. Richardson PH, Jeffcoat R, Shi YC (2000) High-amylose starches: from biosynthesis to their use as food ingredients. Materials Research Society Bulletin 25, 20-24.
43. Stinard PS, Robertson DS, Schnable PS (1993) Genetic isolation, cloning, and analysis of a mutator-induced, dominant antimorph of the maize amylose extender1 locus. The Plant Cell 5, 1555-1566. doi: 10.1105/TPC.5.11.1555
44. Takagi K, Nagano H, Kishima Y, Sano Y (2003) MITE-transposon display efficiently detects polymorphisms among the Oryza AA-genome species. Breeding Science 53, 125-132. doi: 10.1270/JSBBS.53.125
45. Takaoka M, Watanabe S, Sassa H, Yamamori M, Nakamura T, Sasakuma T, Hirano H (1997) Structural characterisation of high-molecular-weight starch granule-bound proteins in wheat (Triticum aestivum L.). Journal of Agricultural and Food Chemistry 45, 2929-2934. doi: 10.1021/JF9702656
46. Tanaka K, Ohnishi S, Kishimoto N, Kawasaki T, Baba T (1995) Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase. Plant Physiology 108, 677-683. doi: 10.1104/PP.108.2.677
47. Umemoto T, Terashima K (2002) Activity of granule-bound starch synthase is an important determinant of amylose content in rice endosperm. Functional Plant Biology 29, 1121-1124. doi: 10.1071/PP01145
48. Umemoto T, Nakamura Y, Satoh H, Terashima K (1999) Differences in amylopectin structure between two rice varieties in relation to the effects of temperature during grain-filling. Starch 51, 58-62. doi: 10.1002/(SIC1)1521- 379X(199903)51:2〈58::A1D-STAR58〉3.0.CO;2-J
49. Umemoto T, Yano M, Satoh H, Shomura A, Nakamura Y (2002) Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties. Theoretical and Applied Genetics 104, 1-8. doi: 10.1007/S001220200000
50. Umemoto T, Yano M, Satoh H, Shomura A, Okamoto K, Kobayashi K, Nakamura Y (in press) The alk locus controls amylopectin structure and a starch synthase activity. In 'Rice gentics IV. Supplementary volume'. (Eds GS Khush, DS Brar, and B Hardy) (International Rice Research Institute: Los Banos, Phillipines)
51. Warth FJ, Darabsett DB (1914) Disintegration of rice grains by means of alkali. Bulletin of Agricultural Research Institute, Pasa 38, 1-9.
52. Webb BD (1991) Rice quality and grades. In 'Rice. Vol. 2. Utilization (2nd edn)'. (Ed. BS Luh) pp. 89-119. (Van Nostrand Reinhold: New York, NY)
53. Yamamori M, Fujita M, Hayakawa K, Matsuki J, Yasui T (2000) Genetic elimination of a starch granule protein, SGP-1, of wheat generates an altered starch with apparent high amylose. Theoretical and Applied Genetics 101, 21-29. doi: 10.1007/S001220051444
54. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, et al. (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. The Plant Cell 12, 2473-2483. doi: 10.1105/TPC.12.12.2473