Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties

Theoretical and Applied Genetics

Volumn 104, Issue 1, 2002, Pages 1-8

  Umemoto, T ^a,e   Yano, M ^b   Satoh, H ^c   Shomura, A ^b   Nakamura, Y ^d  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR TOHOKU REGION   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c KYUSHU UNIVERSITY   (Japan)

^d AKITA PREFECTURAL UNIVERSITY   (Japan)

^e NATIONAL AGRICULTURAL RESEARCH CENTER   (Japan)

Author keywords

Amylopectin; Indica rice; Japonica rice; Starch; Starch synthase

Indexed keywords

CHEMICAL ACTIVATION; ENZYMES; GENES; PLANTS (BOTANY); SOLUTIONS; STARCH; TEMPERATURE;

GELATINIZATION; GENE MAPPING;

GENETIC ENGINEERING;

EMBRYOPHYTA; JAPONICA;

EID: 0036938709     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220200000     Document Type: Article

References (48)

1. Abel GJW, Springer F, Willmitzer L, Kossman J (1996) Cloning and functional analysis of a cDNA encoding a novel 139-kDa starch synthase from potato (Solanum tuberosum L.). Plant J 10:981-991
2. Baba T, Nishihara M, Mizuno K, Kawasaki T, Shimada H, Kobayashi E, Ohnishi S, Tanaka K, Arai Y (1993) Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds. Plant Physiol 103:565-573
3. Beatty MK, Rahman A, Cao H, Woodman W, Lee M, Myers AM, James MG (1999) Purification and molecular genetic characterization of ZPU1, a pullulanase-type starch-debranching enzyme from maize. Plant Physiol 119:255-266
4. Cao H, Imparl-Radosevich J, Guan H, Keeling PL, James MG, Myers AM (1999) Identification of the soluble starch synthase activities of maize endosperm. Plant Physiol 120:205-215
5. Craig J, Lloyd JR, Tomlinson K, Barber L, Edwards A, Wang TL, Martin C, Hedley CL, Smith AM (1998) Mutations in the gene encoding starch synthase II profoundly alter amylopectin structure in pea embryos. Plant Cell 10:413-426
6. Edwards A, Marshall J, Sidebottom C, Visser RGF, Smith AM, Martin C (1995) Biochemical and molecular characterization of a novel starch synthase from potato tubers. Plant J 8:283-294
7. Edwards A, Fulton DC, Hylton CM, Jobling SA, Gidley M, Rossner U, Martin C, Smith AM (1999) A combined reduction in activity of starch synthase II and III of potato has novel effects on the starch of tubers. Plant J 17:251-261
8. Fontaine T, D'Hulst C, Maddelein M-L, Routier F, Pepin TM, Decq A, Wieruszeski J-M, Delrue B, Van den Koornhuyse N, Bossu J-P, Fournet B, Ball S (1993) Toward an understanding of the biogenesis of the starch granule. Evidence that Chlamydomonas soluble starch synthase II controls the synthesis of intermediate size glucans of amylopectin. J Biol Chem 268:16223-16230
9. Fujita N, Kubo A, Francisco Jr, PB, Nakakita M, Harada K, Minaka N, Nakamura Y (1999) Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice. Planta 208:283-293
10. Gao M, Fisher DK, Kim K-N, Shannon JC, Guiltinan MJ (1997) Independent genetic control of maize starch-branching enzymes IIa and IIb. Plant Physiol 114:69-78
11. Gao M, Wanat J, Stinard PS, James MG, Myers AM (1998) Characterization of dull1, a maize gene coding for a novel starch synthase. Plant Cell 10:399-412
12. Gidley MJ, Bulpin PV (1987) Crystallisation of malto-oligosaccharides as models of the crystalline forms of starch: Minimum chain-length requirement for the formation of double helices. Carbohydr Res 161:291-300
13. Harn C, Knight M, Ramakrishnan A, Guan H, Keeling PL, Wasserman BP (1998) Isolation and characterization of the zSSIIa and zSSIIb starch synthase cDNA clones from maize endosperm. Plant Mol Biol 37:639-649
14. Harrington SE, Bligh HFJ, Park WD, Jones CA, McCouch SR (1997) Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses. Theor Appl Genet 94:564-568
15. 2 Population. Genetics 148:479-494
16. He P, Li SG, Qian Q, Ma YQ, Li JZ, Wang WM, Chen Y, Zhu LH (1999) Genetic analysis of rice grain quality. Theor Appl Genet 98:502-508
17. Juliano BO, Bautista GM, Lugay JC, Reyes AC (1964) Studies on the physicochemical properties of rice. J Agric Food Chem 12:131-138
18. Kubo A, Fujita N, Harada K, Matsuda T, Satoh H, Nakamura Y (1999) The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm. Plant Physiol 121:399-409
19. Kudo M (1968) Genetical and thremmatological studies of characters, physiological or ecological, in the hybrids between ecological rice groups. Bull Natl Inst Agric Sci, Series D, No. 19, pp 1-84
20. Li Z, Chu X, Mouille G, Yan L, K-Hashemi B, Hey S, Napier J, Shewry P, Clarke B, Appels R, Morell MK, Rahman S (1999) The localization and expression of the class II starch synthases of wheat. Plant Physiol 120:1147-1155
21. Lin SY, Sasaki T, Yano M (1998) Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor Appl Genet 96:997-1003
22. Little RR, Hilder GB, Dawson EH (1958) Differential effect of dilute alkali on 25 varieties of milled white rice. Cereal Chem 35:111-126
23. Maniatis T, Fritsch EF, Sambrook J (1982) Molecular Cloning: a Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
24. Marshall J, Sidebottom C, Debet M, Martin C, Smith AM, Edwards A (1996) Identification of the major starch synthase in the soluble fraction of potato tubers. Plant Cell 8:1121-1135
25. Martin C, Smith AM (1995) Starch biosynthesis. Plant Cell 7:971-985
26. Mizuno K, Kimura K, Arai Y, Kawasaki T, Shimada H, Baba T (1992) Starch branching enzymes from immature rice seeds. J Biochem 112:643-651
27. Moates GK, Noel TR, Parker R, Ring SG (1997) The effect of chain length and solvent interactions on the dissolution of the B-type crystalline polymorph of amylose in water. Carbohydr Res 298:327-333
28. Nakamura Y, Nagamura Y, Kurata N, Minobe Y (1994) Linkage localization of the starch branching enzyme I (Q-enzyme I) gene in rice. Theor Appl Genet 89:859-860
29. Nakamura Y, Umemoto T, Ogata N, Kuboki Y, Yano M, Sasaki T (1996) Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: Purification, cDNA and chromosomal localization of the gene. Planta 199:209-218
30. Nakamura Y, Kubo A, Shimamune T, Matsuda T, Harada K, Satoh H (1997) Correlation between activities of starch debranching enzyme and α-polyglucan structure in endosperm of sugary-1 mutants of rice. Plant J 12:143-153
31. th Asian-Pacific Conference on Agric Biotech, Darwin, Australia, pp 385-387
32. Nishi A, Nakamura Y, Tanaka N, Satoh H (2001) Biochemical and genetic analysis of the effects of amylose-extender mutations in rice endosperm. Plant Physiol 127: in press
33. Noda T, Takahata Y, Sato T, Suda I, Morishita T, Ishiguro K, Yamakawa O (1998) Relationships between chain length distribution of amylopectin and gelatinization properties within the same botanical origin for sweet potato and buckwheat. Carbohydr Polym 37:153-158
34. Oka H, Morishima H (1997) Wild and cultivated rice. In: Matsuo T, Futsuhara Y, Kikuchi F, Yamaguchi H (eds) Science of the rice plant, vol 3, Genetics. Nobunkyo, Tokyo, pp 88-111
35. Preiss J, Levi C (1980) Starch biosynthesis and degradation. In: Preiss J (ed) The Biochemistry of Plants, vol 3. Academic Press, New York, pp 371-423
36. Safford R, Jobling SA, Sidebottom CM, Westcott RJ, Cooke D, Tober KJ, Strongitharm BH, Russel AL, Gidley MJ (1998) Consequences of antisense RNA inhibition of starch branching enzyme activity on properties of potato starch. Carbohydr Polym 35:155-168
37. Saito A, Yano M, Kishimoto N, Nakagahra M, Yoshimura A, Saito K, Kuhara S, Ukai Y, Kawase M, Nagamine T, Yoshimura S, Ideta O, Ohsawa R, Hayano Y, Iwata N, Sugiura M (1991) Linkage map of restriction fragment length polymorphism loci in rice. Jpn J Breed 41:665-670
38. Sano Y (1984) Differential regulation of waxy gene expression in rice endosperm. Theor Appl Genet 68:467-473
39. Sano Y, Katsumata M, Amano E (1985) Correlations between the amounts of amylose and wx protein in rice endosperm. SABRAO J 17:121-127
40. Smith AM, Denyer K, Martin C (1997) The synthesis of the starch granule. Annu Rev Plant Physiol Plant Mol Biol 48:67-87
41. Stinard PS, Robertson DS, Schnable PS (1993) Genetic isolation, cloning, and analysis of a Mutator-induced, dominant antimorph of the maize amylose extender1 locus. Plant Cell 5:1555-1566
42. Tan YF, Li JX, Yu SB, Xing YZ, Xu CG (1999) The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid. Shanyou 63. Theor Appl Genet 99:642-648
43. Tanaka K, Ohnishi S, Kishimoto N, Kawasaki T, Baba T (1995) Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase. Plant Physiol 108:677-683
44. Umemoto T, Nakamura Y, Satoh H, Terashima K (1999) Differences in amylopectin structure between two rice varieties in relation to the effects of temperature during grain-filling. Starch 51:58-62
45. Warth FJ, Darabsett DB (1914) Disintegration of rice grains by means of alkali. Bull Agric Res Inst Pusa 38, pp 1-9
46. Yamamori M, Fujita S, Hayakawa K, Matsuki J, Yasui T (2000) Genetic elimination of a starch granule protein, SGP-1, of wheat generates an altered starch with apparent high amylose. Theor Appl Genet 101:21-29
47. Yamamoto K, Sasaki T (1997) Large-scale EST sequencing in rice. Plant Mol Biol 35:135-144
48. Yamanouchi H, Nakamura Y (1992) Organ specificity of isoforms of starch branching enzyme (Q-enzyme) in rice. Plant Cell Physiol 33:985-991