Climate change goes underground: Effects of elevated atmospheric CO 2 on microbial community structure and activities in the rhizosphere

Biology and Fertility of Soils

Volumn 44, Issue 5, 2008, Pages 667-679

  Drigo, Barbara ^a   Kowalchuk, George A ^a,b   Van Veen, Johannes A ^a,c  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b VU UNIVERSITY AMSTERDAM   (Netherlands)

^c LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Carbon dynamics; Elevated atmospheric CO2; Microbial community; Microfauna; Rhizosphere

Indexed keywords

CARBON CYCLE; CARBON DIOXIDE; CLIMATE CHANGE; CLIMATE EFFECT; COMMUNITY STRUCTURE; EXPERIMENTAL STUDY; HETEROTROPHY; METABOLISM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; ORGANIC CARBON; PHOTOSYNTHESIS; RHIZOSPHERE; TERRESTRIAL ECOSYSTEM;

BACTERIA (MICROORGANISMS);

EID: 43349094712     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-008-0277-3     Document Type: Review

References (135)

1. 2. New Phytol 165:351-372
2. 2. Plant Soil 296:159-172
3. 2 in a chaparral ecosystem. Ecol Appl 15:1701-1711
4. 2 enrichment on the physiology, growth and dry mass allocation of seedlings of Alnus rubra Bong. New Phytol 116:55-66
5. 2: simultaneous positive and negative below-ground feedbacks. Glob Chang Biol 3:247-258
6. 2 concentration. Plant Soil 157:215-225
7. Bruce KD, Jones TH, Bezemer TM, Thompson LJ, Ritchie DA (2000) The effect of elevated atmospheric carbon dioxide levels on soil bacterial communities. Glob Chang Biol 6:427-434
8. Brussaard L, Behan-Pelletier VM, Bignell DE, Brown VK, Didden W, Folgarait P, Fragroso C, Freckman DW, Gupta V, Hattori T, Hawksworth DL, Klopatek C, Lavelle P, Malloch DW, Rusek J, Soderstrom B, Tiedje JM, Virginia RA (1997) Biodiversity and ecosystem functioning in soil. Ambio 26:563-570
9. Carney KM, Hungate BA, Drake BG, Megonigal JP (2007) Altered soil microbial community at elevated CO2 leads to loss of soil carbon. Pro Natl Acad Sci U S A 104:4990-4995
10. 2, rhizosphere processes, and soil organic matter decomposition. Plant Soil 202:167-174
11. Cheng WX, Gershenson A (2007) Carbon fluxes in the rhizosphere. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere: an ecological perspective. Elsevier Academic Press, London, UK, pp 31-56
12. 2 concentrations: an invariant NPP:GPP ratio? Glob Chang Biol 6:931-941
13. 2 and O-3. Oecologia 147:143-154
14. 2 enhances below-ground C allocation in three perennial grass species at different levels of N availability. New Phytol 137:421-431
15. 2 reduces the nitrogen concentration of plant tissues. Glob Chang Biol 4:43-54
16. 2 concentration on quality of plant material and litter decomposition. Tree Physiol 19:301-311
17. Curtis PS (1996) A meta-analysis of leaf gas exchange and nitrogen in trees grown under elevated carbon dioxide. Plant Cell Environ 19:127-137
18. 2 effects on woody plant mass, form, and physiology. Oecologia 113:299-313
19. 2 effects on belowground processes in C-3 and C-4 estuarine marsh communities. Ecology 71:2001-2006
20. Curtis TP, Sloan WT, Scannell JW (2002) Estimating prokaryotic diversity and its limits. Proc Natl Acad Sci U S A 99:10494-10499
21. Diaz S, Grime JP, Harris J, McPherson E (1993) Evidence of a feedback mechanism limiting plant response to elevated carbon dioxide. Nature 364:616-617
22. 2. Biogeosciences 4:769-779
23. De Ruiter P, Moore J, Zwart K, Bouwman L, Hassink J, Bloem J, De Vos J, Marinissen J, Didden W, Lebbink G, Brussaard L (1993) Simulation of nitrogen mineralization in the belowground food webs of two winter-wheat fields. J. Appl Ecol 30:95-106
24. Drigo B, Kowalchuk GA, Yergeau E, Bezemer TM, Boschker HTS, Van Veen JA (2007) Impact of elevated carbon dioxide on the rhizosphere communities of Carex arenaria and Festuca rubra. Glob Chang Biol 13:2396-2410
25. 2 enrichment on microbial community structure in calcareous grassland. Plant Soil 264:313-323
26. 2. Plant Soil 197:51-259
27. Fitter AH, Heinemeyer A, Staddon PL (2000) The impact of elevated CO2 and global climate change on arbuscular mycorrhizas: a mycocentric approach. New Phytol 147:179-187
28. Fitter AH, Heinemeyer A, Husband R, Olsen E, Ridgway KP, Staddon PL (2004) Global environmental change and the biology of arbuscular mycorrhizas: gaps and challenges. Can J Bot 82:1133-1139
29. 2 alters root symbiont community structure in forest trees. New Phytol 152:431-442
30. 2 (Swiss FACE). Soil Biol Biochem 37:1962-1965
31. 2 enrichment in well-fertilized grass and legume monocultures. Glob Chang Biol 10:189-199
32. 2 partial pressure. New Phytol 167:531-542
33. 2 and N availability on tissue concentrations and whole plant pools of carbon-based secondary compounds in loblolly pine (Pinus taeda). Oecologia 113:29-36
34. Griffiths BS, Ritz K, Ebblewhite N, Paterson E (1998) Ryegrass rhizosphere microbial community structure under elevated C dioxide concentrations, with observations on wheat rhizosphere. Soil Biol Biochem 30:315-321
35. 2 on mycorrhizal associations and implications for plant growth. Biol Fertil Soils 23:388-398
36. 2 enrichment. Soil Biol Biochem 30:1033
37. 2. Pedobiologia 44:725-735
38. 2. Nature 409:188-191
39. 2 enrichment. TREE 14:433-437
40. Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774
41. Hughes JB, Bohannan BJM (2004) Application of ecological diversity statistics in microbial ecology. In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans AD, van Elsas JD (eds) Molecular microbial ecology manual, 2nd edition. Kluwer, Dordrecht, The Netherlands, pp 1321-1344
42. Hungate BA, Holland EA, Jackson RB, Chapin FS, Mooney HA, Field CB (1997) The fate of carbon in grasslands under carbon dioxide enrichment. Nature 388:576-579
43. 2. Oecologia 124:589-598
44. Hungate BA, Dukes JS, Shaw MR, Luo Y, Field CB (2003) Atmospheric science: nitrogen and climate change. Science 302:1512-1513
45. 2 in an artificial tropical ecosystem. J. Microbiol Methods 36:45
46. IPCC Climate Change (2007) Synthesis Report. Summary for Policymakers. http://www.ipcc.ch. November 2007
47. Jackson RB, Mooney HA, Schulze ED (1997) A global budget for fine root biomass, surface area, and nutrient contents. Proc Natl Acad Sci U S A 94:362-7366
48. 2 alters soil microbial communities associated with trembling aspen (Populus tremuloides) roots. Microb Ecol 50:102-109
49. Johnson NC, Gehring CA (2007) Mycorrhizas: symbiotic mediators of rhizosphere and ecosystem processes. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere: an ecological perspective. Elsevier Academic Press, London, UK, pp 31-56
50. 2 and soil N impact plant community composition. Ecol Lett 6:532-540
51. Jones TH, Thompson TJ, Lawton JH, Bezemer TM, Bardgett RD, Blackburn TM, Bruce KD, Cannon PF, Hall GS, Hartley SE, Howson G, Jones CG, Kampichler C, Kandeler E, Ritchie DA (1998) Impacts of rising atmospheric carbon dioxide on model terrestrial ecosystems. Science 280:441-443
52. Jones DL, Hodge A, Kuzyakov Y (2004) Plant and mycorrhizal regulation of rhizodeposition. New Phytol 163:459-480
53. 2 concentrations on the root growth of Lolium perenne and Trifolium repens grown in a FACE*system. Glob Chang Biol 1:361-371
54. 2 modifies total and metabolically active bacterial communities in the rhizosphere of two perennial grasses grown under field conditions. FEMS Microbiol Ecol 55:339-350
55. 2 and temperature in a terrestrial model ecosystem. Plant Soil 202:251-262
56. 2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis. Appl Environ Microbiol 68:4370-4376
57. 2. Funct Ecol 10:527-534
58. 2 under field conditions. Glob Chang Biol 3:473-478
59. 2 overestimates community response in a model plant-soil system. Nature 433:621-624
60. 2, temperature, and nitrogen. Plant Soil 195:107-119
61. 2 from four forest FACE experiments. Glob Chang Biol 10:1027-1042
62. 2 enrichment. Ecol Appl 10:1590-1619
63. Körner C, Arnone JA (1992) Responses to elevated carbon-dioxide in artificial tropical ecosystems. Science 257:1672-1675
64. Kreuzer-Martin HW (2007) Stable isotope probing: linking functional activity to specific members of microbial communities. Soil Sci Soc Am J 71:611-619
65. Kuikman PJ, Lekkerkerk LJA, Van Veen JA (1991) Carbon dynamics of a soil planted with wheat under elevated CO2 concentration. In: Wilson WS (ed) Advances in soil organic matter research: the impact on agriculture and the environment, vol Special Publication 90. The Royal Society of Chemistry, Cambridge, UK, pp 267-274
66. Lekkerkerk LJA, Van de Geijn SC, Van Veen JA (1990) Effects of elevated atmospheric CO2-levels on the carbon economy of a soil planted with wheat. In: Bowman AF (ed) Soils and the greenhouse effect. Wiley, Chichester, pp 423-429
67. 2 on soil microbial biomass, activity, and diversity in a chaparral ecosystem. Appl Environ Microbiol 71:8573-8580
68. Long SP, Ainsworth EA, Rogers A, Ort DR (2004) Rising atmospheric carbon dioxide: plants face the future. Annu Rev Plant Biol 55:591-628
69. Luo Y, Su B, Currie W, Dukes J, Finzi A, Hartwig U, Hungate B, McMurtrie R, Oren R, Parton W, Pataki D, Shaw M, Zak D, Field C (2004) Progressive nitrogen limitation of ecosystem responses to rising atmospheric carbon dioxide. Bioscience 54:731-739
70. 2 in poplar model systems. Oecologia 113:247-251
71. 2 content on soil and rhizosphere bacterial communities beneath Lolium perenne and Trifolium repens under field conditions. Microb Ecol 38:39-49
72. 2 alters community-level physiological profiles and enzyme activities in alpine grassland. J Microbiol Methods 36:35-43
73. 2 alters microbial population structure in a pasture ecosystem. Glob Chang Biol 6:475-482
74. Moore JC, Hunt HW (1998) Resource compartmentation and the stability of real ecosystems. Nature 333:261-263
75. 13C-pulse-labelling/soil physical fractionation study. Funct Ecol 15:43-50
76. 2 enrichment evoke changes in soil structure and soil biota of nutrient-poor grassland. Glob Chang Biol 9:585-600
77. 2 alters functional attributes of nematode communities in forest soils. Funct Ecol 18:584-591
78. Norby RJ (1994) Issues and perspectives for investigating root responses to elevated atmospheric carbon-dioxide. Plant Soil 165:9-20
79. Olsrud M, Melillo JM, Christensen TR, Michelsen A, Wallander H, Olsson PA (2004) Response of ericoid mycorrhizal colonization and functioning to global change factors. New Phytol 162:459-469
80. Owen AG, Jones D (2001) Competition for amino acids between wheat roots and rhizosphere microorganisms and the role of amino acids in plant N acquisition. Soil Biol Biochem 33:651-657
81. Pace NR (1997) A molecular view of microbial diversity and the biosphere. Science 276:734-740
82. 2-enrichment and nutrient availability alter ectomycorrhizal fungal communities. Ecology 87:2278-2287
83. 2 concentration on C-partitioning and rhizosphere C-flow for three plant species. Soil Biol. Biochem 28:195-201
84. 2 on rhizosphere carbon flow and soil microbial processes. Glob Chang Biol 3:363-377
85. 2 and temperature: a discussion of observations, measurement methods, and models. New Phytol 162:311-322
86. 2. New Phytol 173:664-667
87. Phillips RL, Zak DR, Holmes WE, White DC (2002) Microbial community composition and function beneath temperate trees exposed to elevated atmospheric carbon dioxide and ozone. Oecologia 131:236-244
88. Phillips DA, Fox TC, King MD, Bhuvaneswari TV, Teuber LR (2004) Microbial products trigger amino acid exudation from plant roots. Plant Physiol 136:2887-2894
89. 2. Glob Chang Biol 12:561-567
90. 2-case studies, processes and perspectives. Ecological studies serie, vol 187. Springer, Berlin, pp 413-428
91. Pregitzer KS, Laskowski MJ, Burton AJ, Lessard VC, Zak DR (1998) Variation in sugar maple root respiration with root diameter and soil depth. Tree Physiol 18:665-670
92. 2 and soil-N availability on fine roots of Populus tremuloides. Ecol Appl 10:18-33
93. Pregitzer KS, Zak DR, Loya WM, Karberg NJ, King JS, Burton AJ (2007) The contribution of root - Rhizosphere biochemical cycles in changing world. In: Cardon ZG, Whitbeck JL (eds) The rhizosphere: an ecological perspective. Elsevier Academic Press, London, UK, pp 155-178
94. Radajewski S, Ineson P, Parekh NR, Murrell JC (2000) Stable-isotope probing as a tool in microbial ecology. Nature 403:646-649
95. Randlett DL, Zak DR, Pregitzer KS et al (1996) Elevated atmospheric carbon dioxide and leaf litter chemistry: Influences on microbial respiration and net nitrogen mineralization. Soil Sci Soc Am J 60:1571-1577
96. 2 for seven years. Soil Biol Biochem 35:1325-1335
97. 2? Mycorrhiza 9:1-8
98. 2 as a function of soil depth. Plant Soil 254:383-391
99. Rillig MC, Mummey DL (2006) Mycorrhizas and soil structure. New Phytol 171:41-53
100. Rillig MC, Scow KM, Klironomos JN, Allen MF (1997) Microbial carbon-substrate utilization in the rhizosphere of Gutierrezia sarothrae grown in elevated atmospheric carbon dioxide. Soil Biol Biochem 29:1387-1394
101. 2 and nutrients. Oecologia 113:252-259
102. Rillig MC, Wright SF, Kimball BA, Leavitt SW (2001) Elevated carbon dioxide and irrigation effects on water stable aggregates in a Sorghum field: a possible role for arbuscular mycorrhizal fungi. Glob Chang Biol 7:333-337
103. Rillig MC, Wright SF, Shaw MR, Field CB (2002) Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in an annual grassland. Oikos 97:52-58
104. 2 enrichment with emphasis on roots and the rhizosphere. Environ Pollut 83:155-189
105. 2 and presence of mycorrhiza. Soil Biol Biochem 34:923-932
106. 2 on protozoan abundance in soil planted with wheat and on decomposition of wheat roots. Plant Soil 251:13-21
107. 2. Glob Chang Biol 3:217-224
108. 2 enrichment. Oecologia 117:496-503
109. 2 and climate to carbon storage by ecosystems in the United States. Science 287:2004-2006
110. Schortemeyer M, Hartwig UA, Hendrey GR, Sadowsky MJ (1996) Microbial community changes in the rhizospheres of white clover and perennial ryegrass exposed to free air carbon dioxide enrichment (FACE). Soil Biol Biochem 28:1717-1724
111. 2. Glob Chang Biol 11:1148-1155
112. 2 fixation: a link between the carbon and nitrogen cycles in grassland ecosystems. Plant Soil 187:321-332
113. 2: comparisons of mass loss of litter with soil respiration and soil microbial biomass. Soil Biol Biochem 32:1359
114. Staddon PL (2005) Mycorrhizal fungi and environmental change: the need for a mycocentric approach. New Phytol 167:635-637
115. 2 on mycorrhizal colonization, external mycorrhizal hyphal production and phosphorus inflow in Plantago lanceolata and Trifolium repens in association with the arbuscular mycorrhizal fungus Glomus mosseae. Glob Chang Biol 5:347-358
116. Staddon PL, Heinemeyer A, Fitter AH (2002) Mycorrhizas and global environmental change: research at different scales. Plant Soil 244:253-261
117. 2-case studies, processes and perspectives. Ecological studies serie, vol 187. Springer, Berlin, pp 393-409
118. Tenuta M, Ferris H (2004) Relationship between nematode like-history classification and sensitivity to stressor: ionic and osmotic effects of nitrogenous solutions. J Nematol 36:85-94
119. Thomas RB, Richter DD, Ye H, Heine PR, Strain BR (1991) Nitrogen dynamics and growth of seedlings of an N-fixing tree (Gliricidia sepium (Jacq.) Walp.) exposed to elevated atmospheric carbon dioxide. Oecologia 88:415-421
120. 2-fixing tree. Oecologia 109:28-33
121. 2. Biol Fertil Soils 25:60-62
122. 2 and nitrogen deposition. New Phytol 147:189-200
123. Van Ginkel JH, Gorissen A (1998) In situ decomposition of grass roots as affected by elevated atmospheric carbon dioxide. Soil Sci Soc Am J 62:951-958
124. Van Ginkel JH, Gorissen A, Polci D (2000) Elevated atmospheric carbon dioxide concentration: effects of increased carbon input in a Lolium perenne soil on microorganisms and decomposition. Soil Biol Biochem 32:449-456
125. Van Veen JA, Morgan JAW, Whipps JM (2007) Methodological approaches to the study of carbon flow and the associated microbial population dynamics in the rhizosphere. In: Pinton R, Varanini Z, Nannipieri P (eds) The rhizosphere. CRC, Boca Raton, pp 371-399
126. 2 and soil N fertility effects on growth, mycorrhizal colonization, and xylem water potential of juvenile ponderosa pine in a field soil. Plant Soil 195:25-36
127. 2 enrichment and warming of the atmosphere enhance both productivity and mortality of maple tree fine roots. New Phytol 162:437-446
128. Wiemken V, Laczko E, Ineichen K, Boller T (2001) Effects of elevated carbon dioxide and nitrogen fertilization on mycorrhizal fine roots and the soil microbial community in beech-spruce ecosystems on siliceous and calcareous soil. Microb Ecol 42:126-135
129. 2 for 8 years. Plant Soil 227:127-137
130. 2 and plant species richness impact arbuscular mycorrhizal fungal spore communities. New Phytol 157:579-588
131. Yeates GW, Tate KR, Newton PCD (1997) Response of the fauna of a grassland soil to doubling of atmospheric carbon dioxide concentration. Biol Fertil Soils 25:307-315
132. Yeates GW, Newton PCD, Ross DJ (2003) Significant changes in soil microfauna in grazed pasture under elevated carbon dioxide. Biol Fertil Soils 38:319-326
133. 2 and feedback between carbon and nitrogen cycles. Plant Soil 151:105-117
134. 2. Ecol Appl 6:257-262
135. 2 and the composition and function of soil microbial communities. Ecol Appl 10:47-59