-
1
-
-
0034824065
-
Model selection by MCMC computation
-
1
-
Andrieu, C., Djurić, P. M., & Doucet, A. (2001). Model selection by MCMC computation. Signal Processing, 81(1), 19-37.
-
(2001)
Signal Processing
, vol.81
, pp. 19-37
-
-
Andrieu, C.1
Djurić, P.M.2
Doucet, A.3
-
2
-
-
15944361900
-
Informative structure priors: Joint learning of dynamic regulatory networks from multiple types of data
-
World Scientific Singapore
-
Bernard, A., & Hartemink, A. (2005). Informative structure priors: joint learning of dynamic regulatory networks from multiple types of data. In Proceedings of pacific symposium on biocomputing (PSB 05) (Vol. 10, pp. 459-470). Singapore: World Scientific.
-
(2005)
Proceedings of Pacific Symposium on Biocomputing (PSB 05) 10
, pp. 459-470
-
-
Bernard, A.1
Hartemink, A.2
-
3
-
-
0037349687
-
Nonparametric convergence assessment for MCMC model selection
-
1
-
Brooks, S. P., Giudici, P., & Philippe, A. (2003). Nonparametric convergence assessment for MCMC model selection. Journal of Computational and Graphical Statistics, 12(1), 1-22.
-
(2003)
Journal of Computational and Graphical Statistics
, vol.12
, pp. 1-22
-
-
Brooks, S.P.1
Giudici, P.2
Philippe, A.3
-
4
-
-
34547840185
-
An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks
-
12
-
Ching, W.-K., Zhang, S.-Q., Ng, M. K., & Akutsu, T. (2007). An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks. Bioinformatics, 23(12), 1511-1518.
-
(2007)
Bioinformatics
, vol.23
, pp. 1511-1518
-
-
Ching, W.-K.1
Zhang, S.-Q.2
Ng, M.K.3
Akutsu, T.4
-
6
-
-
34249832377
-
A Bayesian method for the induction of probabilistic networks from data
-
4
-
Cooper, G. F., & Herskovits, E. (1992). A Bayesian method for the induction of probabilistic networks from data. Machine Learning, 9(4), 309-347.
-
(1992)
Machine Learning
, vol.9
, pp. 309-347
-
-
Cooper, G.F.1
Herskovits, E.2
-
7
-
-
0003687180
-
-
Springer New York
-
Cowell, R. G., Dawid, A. P., Lauritzen, S. L., & Spiegelhalter, D. J. (1999). Probabilistic networks and expert systems. New York: Springer.
-
(1999)
Probabilistic Networks and Expert Systems
-
-
Cowell, R.G.1
Dawid, A.P.2
Lauritzen, S.L.3
Spiegelhalter, D.J.4
-
8
-
-
84990553353
-
A model for reasoning about persistence and causation
-
3
-
Dean, T., & Kanazawa, K. (1989). A model for reasoning about persistence and causation. Computational Intelligence, 5(3), 142-150.
-
(1989)
Computational Intelligence
, vol.5
, pp. 142-150
-
-
Dean, T.1
Kanazawa, K.2
-
9
-
-
0000860415
-
Markov chain Monte Carlo model determination for hierarchical and graphical log-linear models
-
3
-
Dellaportas, P., & Forster, J. J. (1999). Markov chain Monte Carlo model determination for hierarchical and graphical log-linear models. Biometrika, 86(3), 615-633.
-
(1999)
Biometrika
, vol.86
, pp. 615-633
-
-
Dellaportas, P.1
Forster, J.J.2
-
10
-
-
15944399178
-
Sparse graphical models for exploring gene expression data
-
1
-
Dobra, A., Hans, C., Jones, B., Nevins, J. R., Yao, G., & West, M. (2004). Sparse graphical models for exploring gene expression data. Journal of Multivariate Analysis, 90(1), 196-212.
-
(2004)
Journal of Multivariate Analysis
, vol.90
, pp. 196-212
-
-
Dobra, A.1
Hans, C.2
Jones, B.3
Nevins, J.R.4
Yao, G.5
West, M.6
-
11
-
-
33646023117
-
An introduction to ROC analysis
-
8
-
Fawcett, T. (2006). An introduction to ROC analysis. Pattern Recognition Letters, 27(8), 861-874.
-
(2006)
Pattern Recognition Letters
, vol.27
, pp. 861-874
-
-
Fawcett, T.1
-
12
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
Friedman, N. (2004). Inferring cellular networks using probabilistic graphical models. Science, 303, 799-805.
-
(2004)
Science
, vol.303
, pp. 799-805
-
-
Friedman, N.1
-
13
-
-
0037262841
-
Being Bayesian about network structure. A Bayesian approach to structure discovery in Bayesian networks
-
Friedman, N., & Koller, D. (2003). Being Bayesian about network structure. A Bayesian approach to structure discovery in Bayesian networks. Machine Learning, 50, 95-125.
-
(2003)
Machine Learning
, vol.50
, pp. 95-125
-
-
Friedman, N.1
Koller, D.2
-
15
-
-
0031510558
-
A characterization of the Dirichlet distribution through global and local parameter independence
-
3
-
Geiger, D., & Heckerman, D. (1997). A characterization of the Dirichlet distribution through global and local parameter independence. The Annals of Statistics, 25(3), 1344-1369.
-
(1997)
The Annals of Statistics
, vol.25
, pp. 1344-1369
-
-
Geiger, D.1
Heckerman, D.2
-
16
-
-
0000954353
-
Efficient Metropolis jumping rules
-
Oxford University Press Oxford
-
Gelman, A., Roberts, G. O., & Gilks, W. R. (1996). Efficient Metropolis jumping rules. In J. M. Bernardo, J. O. Berger, A. P. Dawid, & A. F. M. Smith (Eds.), Bayesian statistics (Vol. 5, pp. 599-607). Oxford: Oxford University Press.
-
(1996)
Bayesian Statistics 5
, pp. 599-607
-
-
Gelman, A.1
Roberts, G.O.2
Gilks, W.R.3
Bernardo, J.M.4
Berger, J.O.5
Dawid, A.P.6
Smith, A.F.M.7
-
18
-
-
77956889087
-
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
-
4
-
Green, P. J. (1995). Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika, 82(4), 711-732.
-
(1995)
Biometrika
, vol.82
, pp. 711-732
-
-
Green, P.J.1
-
19
-
-
0035221560
-
Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
-
World Scientific Singapore
-
Hartemink, A., Gifford, D., Jaakkola, T., & Young, R. (2001). Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. In Proceedings of pacific symposium on biocomputing (PSB 01) (Vol. 6, pp. 422-433). Singapore: World Scientific.
-
(2001)
Proceedings of Pacific Symposium on Biocomputing (PSB 01) 6
, pp. 422-433
-
-
Hartemink, A.1
Gifford, D.2
Jaakkola, T.3
Young, R.4
-
20
-
-
0036366689
-
Combining location and expression data for principled discovery of genetic regulatory network models
-
World Scientific Singapore
-
Hartemink, A., Gifford, D., Jaakkola, T., & Young, R. (2002). Combining location and expression data for principled discovery of genetic regulatory network models. In Proceedings of pacific symposium on biocomputing (PSB 02) (Vol. 7, pp. 437-449). Singapore: World Scientific.
-
(2002)
Proceedings of Pacific Symposium on Biocomputing (PSB 02) 7
, pp. 437-449
-
-
Hartemink, A.1
Gifford, D.2
Jaakkola, T.3
Young, R.4
-
21
-
-
0002370418
-
A tutorial on learning with Bayesian networks
-
MIT Press Cambridge
-
Heckerman, D. (1998). A tutorial on learning with Bayesian networks. In M. I. Jordan (Ed.), Learning in graphical models (pp. 301-354). Cambridge: MIT Press.
-
(1998)
Learning in Graphical Models
, pp. 301-354
-
-
Heckerman, D.1
Jordan, M.I.2
-
22
-
-
34249761849
-
Learning Bayesian networks: The combination of knowledge and statistical data
-
3
-
Heckerman, D., Geiger, D., & Chickering, D. (1995). Learning Bayesian networks: the combination of knowledge and statistical data. Machine Learning, 20(3), 197-243.
-
(1995)
Machine Learning
, vol.20
, pp. 197-243
-
-
Heckerman, D.1
Geiger, D.2
Chickering, D.3
-
23
-
-
0344464762
-
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
-
17
-
Husmeier, D. (2003). Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks. Bioinformatics, 19(17), 2271-2282.
-
(2003)
Bioinformatics
, vol.19
, pp. 2271-2282
-
-
Husmeier, D.1
-
25
-
-
3042698613
-
Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network
-
2
-
Imoto, S., Kim, S., Goto, T., Miyano, S., Aburatani, S., & Tashiro, K. (2003). Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network. Journal of Bioinformatics and Computational Biology, 1(2), 231-252.
-
(2003)
Journal of Bioinformatics and Computational Biology
, vol.1
, pp. 231-252
-
-
Imoto, S.1
Kim, S.2
Goto, T.3
Miyano, S.4
Aburatani, S.5
Tashiro, K.6
-
26
-
-
32644431906
-
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks
-
4
-
Lähdesmäki, H., Hautaniemi, S., Shmulevich, I., & Yli-Harja, O. (2006). Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. Signal Processing, 86(4), 814-834.
-
(2006)
Signal Processing
, vol.86
, pp. 814-834
-
-
Lähdesmäki, H.1
Hautaniemi, S.2
Shmulevich, I.3
Yli-Harja, O.4
-
29
-
-
21844520724
-
Bayesian graphical models for discrete data
-
2
-
Madigan, D., & York, J. (1995). Bayesian graphical models for discrete data. International Statistical Review, 63(2), 215-232.
-
(1995)
International Statistical Review
, vol.63
, pp. 215-232
-
-
Madigan, D.1
York, J.2
-
31
-
-
0003229133
-
The Bayes net toolbox for Matlab
-
Software is available on-line at http://bnt.sourceforge.net/
-
Murphy, K. P. (2001). The Bayes net toolbox for Matlab. Computing Science and Statistics, 33, 1-20. Software is available on-line at http://bnt. sourceforge.net/.
-
(2001)
Computing Science and Statistics
, vol.33
, pp. 1-20
-
-
Murphy, K.P.1
-
35
-
-
18144442687
-
Inferring subnetworks from perturbed expression profiles
-
Suppl. 1
-
Pe'er, D., Regev, A., Elidan, G., & Friedman, N. (2001). Inferring subnetworks from perturbed expression profiles. Bioinformatics, 17(Suppl. 1), 215S-224S.
-
(2001)
Bioinformatics
, vol.17
-
-
Pe'Er, D.1
Regev, A.2
Elidan, G.3
Friedman, N.4
-
37
-
-
10244230983
-
Reconstruction of gene networks using Bayesian learning and manipulation experiments
-
17
-
Pournara, I., & Wernisch, L. (2004). Reconstruction of gene networks using Bayesian learning and manipulation experiments. Bioinformatics, 20(17), 2934-2942.
-
(2004)
Bioinformatics
, vol.20
, pp. 2934-2942
-
-
Pournara, I.1
Wernisch, L.2
-
38
-
-
18244378520
-
On Bayesian analysis of mixtures with an unknown number of components, with discussion
-
4
-
Richardson, S., & Green, P. (1997). On Bayesian analysis of mixtures with an unknown number of components, with discussion. Journal of the Royal Statistical Society: Series B, 59(4), 731-792.
-
(1997)
Journal of the Royal Statistical Society: Series B
, vol.59
, pp. 731-792
-
-
Richardson, S.1
Green, P.2
-
39
-
-
0018015137
-
Modeling by shortest data description
-
Rissanen, J. J. (1978). Modeling by shortest data description. Automatica, 14, 465-471.
-
(1978)
Automatica
, vol.14
, pp. 465-471
-
-
Rissanen, J.J.1
-
41
-
-
0034366269
-
Bayesian inference in hidden Markov models through the reversible jump Markov chain Monte Carlo
-
1
-
Robert, C. P., Rydén, T., & Titterington, D. M. (2000). Bayesian inference in hidden Markov models through the reversible jump Markov chain Monte Carlo. Journal of the Royal Statistical Society: Series B, 62(1), 57-75.
-
(2000)
Journal of the Royal Statistical Society: Series B
, vol.62
, pp. 57-75
-
-
Robert, C.P.1
Rydén, T.2
Titterington, D.M.3
-
42
-
-
17644427718
-
Causal protein-signaling networks derived from multiparameter single-cell data
-
5721
-
Sachs, K., Perez, O., Pe'er, D., Lauffenburger, D. A., & Nolan, G. P. (2005). Causal protein-signaling networks derived from multiparameter single-cell data. Science, 308(5721), 523-529.
-
(2005)
Science
, vol.308
, pp. 523-529
-
-
Sachs, K.1
Perez, O.2
Pe'Er, D.3
Lauffenburger, D.A.4
Nolan, G.P.5
-
43
-
-
15944364151
-
An empirical Bayes approach to inferring large-scale gene association networks
-
5
-
Schäfer, J., & Strimmer, K. (2005). An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics, 21(5), 754-764.
-
(2005)
Bioinformatics
, vol.21
, pp. 754-764
-
-
Schäfer, J.1
Strimmer, K.2
-
44
-
-
0000120766
-
Estimating the dimension of a model
-
2
-
Schwarz, G. (1978). Estimating the dimension of a model. Annals of Statistics, 6(2), 461-464.
-
(1978)
Annals of Statistics
, vol.6
, pp. 461-464
-
-
Schwarz, G.1
-
46
-
-
33749825955
-
Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks
-
20
-
Werhli, A. V., Grzegorczyk, M., & Husmeier, D. (2006). Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical Gaussian models and Bayesian networks. Bioinformatics, 22(20), 2523-2531.
-
(2006)
Bioinformatics
, vol.22
, pp. 2523-2531
-
-
Werhli, A.V.1
Grzegorczyk, M.2
Husmeier, D.3
-
47
-
-
22044448669
-
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana
-
11
-
Wille, A., Zimmermann, P., Vranová, E., Fürholz, A., Laule, O., & Bleuler, S. (2004). Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana. Genome Biology, 5(11), R92.
-
(2004)
Genome Biology
, vol.5
, pp. 92
-
-
Wille, A.1
Zimmermann, P.2
Vranová, E.3
Fürholz, A.4
Laule, O.5
Bleuler, S.6
|