메뉴 건너뛰기




Volumn 38, Issue 5, 2008, Pages 574-582

Mathematical modeling and application of genetic algorithm to parameter estimation in signal transduction: Trafficking and promiscuous coupling of G-protein coupled receptors

Author keywords

G protein coupled receptors; Genetic algorithm; Promiscuous coupling; Trafficking

Indexed keywords

MATHEMATICAL MODELS; PARAMETER ESTIMATION; PHARMACODYNAMICS; PROTEINS; SIGNAL TRANSDUCTION;

EID: 42749097961     PISSN: 00104825     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiomed.2008.02.005     Document Type: Article
Times cited : (12)

References (32)
  • 1
    • 0031737627 scopus 로고    scopus 로고
    • Signal transduction as a drug-discovery platform
    • Persidis A. Signal transduction as a drug-discovery platform. Nat. Biotechnol. 16 11 (1998) 1082-1083
    • (1998) Nat. Biotechnol. , vol.16 , Issue.11 , pp. 1082-1083
    • Persidis, A.1
  • 2
    • 33845890639 scopus 로고    scopus 로고
    • It's a GPCR world
    • Filmore D. It's a GPCR world. Mod. Drug Discovery 7 11 (2004) 2002-2005
    • (2004) Mod. Drug Discovery , vol.7 , Issue.11 , pp. 2002-2005
    • Filmore, D.1
  • 4
    • 0035398487 scopus 로고    scopus 로고
    • G-protein-coupled receptors and signaling networks: emerging paradigms
    • Marinissen M.J., and Gutkind J.S. G-protein-coupled receptors and signaling networks: emerging paradigms. Trends Pharmacol. Sci. 22 7 (2001) 368-376
    • (2001) Trends Pharmacol. Sci. , vol.22 , Issue.7 , pp. 368-376
    • Marinissen, M.J.1    Gutkind, J.S.2
  • 5
    • 0037205055 scopus 로고    scopus 로고
    • G protein pathways
    • Neves S.R., Ram P.T., and Iyengar R. G protein pathways. Science 296 5573 (2002) 1636-1639
    • (2002) Science , vol.296 , Issue.5573 , pp. 1636-1639
    • Neves, S.R.1    Ram, P.T.2    Iyengar, R.3
  • 6
    • 0031815337 scopus 로고    scopus 로고
    • Effector pathway-dependent relative efficacy at serotonin type 2A and 2C receptors: evidence for agonist-directed trafficking of receptor stimulus
    • Berg K.A., Maayani S., Goldfarb J., Scaramellini C., Leff P., and Clarke W.P. Effector pathway-dependent relative efficacy at serotonin type 2A and 2C receptors: evidence for agonist-directed trafficking of receptor stimulus. Mol. Pharmacol. 54 1 (1998) 94-104
    • (1998) Mol. Pharmacol. , vol.54 , Issue.1 , pp. 94-104
    • Berg, K.A.1    Maayani, S.2    Goldfarb, J.3    Scaramellini, C.4    Leff, P.5    Clarke, W.P.6
  • 7
    • 0033788831 scopus 로고    scopus 로고
    • Influence of receptor number on functional responses elicited by agonists acting at the human adenosine A(1) receptor: evidence for signaling pathway-dependent changes in agonist potency and relative intrinsic activity
    • Cordeaux Y., Briddon S.J., Megson A.E., McDonnell J., Dickenson J.M., and Hill S.J. Influence of receptor number on functional responses elicited by agonists acting at the human adenosine A(1) receptor: evidence for signaling pathway-dependent changes in agonist potency and relative intrinsic activity. Mol. Pharmacol. 58 5 (2000) 1075-1084
    • (2000) Mol. Pharmacol. , vol.58 , Issue.5 , pp. 1075-1084
    • Cordeaux, Y.1    Briddon, S.J.2    Megson, A.E.3    McDonnell, J.4    Dickenson, J.M.5    Hill, S.J.6
  • 8
    • 0029054965 scopus 로고
    • Agonist-receptor efficacy. II. Agonist trafficking of receptor signals
    • Kenakin T. Agonist-receptor efficacy. II. Agonist trafficking of receptor signals. Trends Pharmacol. Sci. 16 7 (1995) 232-238
    • (1995) Trends Pharmacol. Sci. , vol.16 , Issue.7 , pp. 232-238
    • Kenakin, T.1
  • 10
    • 0042428926 scopus 로고    scopus 로고
    • Modelling of signalling via G-protein coupled receptors: pathway-dependent agonist potency and efficacy
    • Chen C.Y., Cordeaux Y., Hill S.J., and King J.R. Modelling of signalling via G-protein coupled receptors: pathway-dependent agonist potency and efficacy. Bull. Math. Biol. 65 5 (2003) 933-958
    • (2003) Bull. Math. Biol. , vol.65 , Issue.5 , pp. 933-958
    • Chen, C.Y.1    Cordeaux, Y.2    Hill, S.J.3    King, J.R.4
  • 11
    • 0020724143 scopus 로고
    • Recycling receptors: the round-trip itinerary of migrant membrane proteins
    • Brown M.S., Anderson R.G., and Goldstein J.L. Recycling receptors: the round-trip itinerary of migrant membrane proteins. Cell 32 3 (1983) 663-667
    • (1983) Cell , vol.32 , Issue.3 , pp. 663-667
    • Brown, M.S.1    Anderson, R.G.2    Goldstein, J.L.3
  • 12
    • 0022340897 scopus 로고
    • Receptor-mediated endocytosis
    • Wileman T., Harding C., and Stahl P. Receptor-mediated endocytosis. Biochem. J. 232 1 (1985) 1-14
    • (1985) Biochem. J. , vol.232 , Issue.1 , pp. 1-14
    • Wileman, T.1    Harding, C.2    Stahl, P.3
  • 14
    • 0025216934 scopus 로고
    • Cell biology of intracellular protein trafficking
    • Schwartz A.L. Cell biology of intracellular protein trafficking. Annu. Rev. Immunol. 8 (1990) 195-229
    • (1990) Annu. Rev. Immunol. , vol.8 , pp. 195-229
    • Schwartz, A.L.1
  • 16
    • 0030745286 scopus 로고    scopus 로고
    • HIV coreceptor downregulation as antiviral principle: SDF-1alpha-dependent internalization of the chemokine receptor CXCR4 contributes to inhibition of HIV replication
    • Amara A., Gall S.L., Schwartz O., Salamero J., Montes M., Loetscher P., Baggiolini M., Virelizier J.L., and Arenzana-Seisdedos F. HIV coreceptor downregulation as antiviral principle: SDF-1alpha-dependent internalization of the chemokine receptor CXCR4 contributes to inhibition of HIV replication. J. Exp. Med. 186 1 (1997) 139-146
    • (1997) J. Exp. Med. , vol.186 , Issue.1 , pp. 139-146
    • Amara, A.1    Gall, S.L.2    Schwartz, O.3    Salamero, J.4    Montes, M.5    Loetscher, P.6    Baggiolini, M.7    Virelizier, J.L.8    Arenzana-Seisdedos, F.9
  • 17
    • 0036177114 scopus 로고    scopus 로고
    • Drug efficacy at G protein-coupled receptors
    • Kenakin T. Drug efficacy at G protein-coupled receptors. Annu. Rev. Pharmacol. Toxicol. 42 (2002) 349-379
    • (2002) Annu. Rev. Pharmacol. Toxicol. , vol.42 , pp. 349-379
    • Kenakin, T.1
  • 19
    • 0034511515 scopus 로고    scopus 로고
    • H. Lin, K. Yamashita, Hybrid simplex genetic algorithm for blind equalization using RBFnetworks, 2000 IEEE International Conference on Systems, Man, and Cybernetics, vol. 1, 2000.
    • H. Lin, K. Yamashita, Hybrid simplex genetic algorithm for blind equalization using RBFnetworks, 2000 IEEE International Conference on Systems, Man, and Cybernetics, vol. 1, 2000.
  • 20
    • 28044461957 scopus 로고    scopus 로고
    • Genetic algorithms for parameter estimation in mathematical modeling of glucose metabolism
    • Morbiducci U., and Andrea Tura G.M. Genetic algorithms for parameter estimation in mathematical modeling of glucose metabolism. Comput. Biol. Med. 35 10 (2005) 862-874
    • (2005) Comput. Biol. Med. , vol.35 , Issue.10 , pp. 862-874
    • Morbiducci, U.1    Andrea Tura, G.M.2
  • 21
    • 0031053177 scopus 로고    scopus 로고
    • Application of genetic algorithms to parameter estimation of bioprocesses
    • Park L.J., Park C.H., Park C., and Lee T. Application of genetic algorithms to parameter estimation of bioprocesses. Med. Biol. Eng. Comput. 35 1 (1997) 47-49
    • (1997) Med. Biol. Eng. Comput. , vol.35 , Issue.1 , pp. 47-49
    • Park, L.J.1    Park, C.H.2    Park, C.3    Lee, T.4
  • 22
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: a comparison of global optimization methods
    • Moles C.G., Mendes P., and Banga J.R. Parameter estimation in biochemical pathways: a comparison of global optimization methods. Genome Res. 13 11 (2003) 2467-2474
    • (2003) Genome Res. , vol.13 , Issue.11 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 23
    • 40149110264 scopus 로고    scopus 로고
    • Parameter estimate of signal transduction pathways
    • Arisi I., Cattaneo A., and Rosato V. Parameter estimate of signal transduction pathways. BMC Neurosci. 7 Suppl. 1 (2006) S6
    • (2006) BMC Neurosci. , vol.7 , Issue.SUPPL. 1
    • Arisi, I.1    Cattaneo, A.2    Rosato, V.3
  • 24
    • 33845415542 scopus 로고    scopus 로고
    • Cancer gene search with data-mining and genetic algorithms
    • Shah S., and Kusiak A. Cancer gene search with data-mining and genetic algorithms. Comput. Biol. Med. 37 2 (2007) 251-261
    • (2007) Comput. Biol. Med. , vol.37 , Issue.2 , pp. 251-261
    • Shah, S.1    Kusiak, A.2
  • 25
    • 0035101820 scopus 로고    scopus 로고
    • Evolving concepts in G protein-coupled receptor endocytosis: the role in receptor desensitization and signaling
    • Ferguson S.S. Evolving concepts in G protein-coupled receptor endocytosis: the role in receptor desensitization and signaling. Pharmacol. Rev. 53 1 (2001) 1-24
    • (2001) Pharmacol. Rev. , vol.53 , Issue.1 , pp. 1-24
    • Ferguson, S.S.1
  • 27
    • 0024352370 scopus 로고
    • Cohort movement of different ligands and receptors in the intracellular endocytic pathway of alveolar macrophages
    • Ward D.M., Ajioka R., and Kaplan J. Cohort movement of different ligands and receptors in the intracellular endocytic pathway of alveolar macrophages. J. Biol. Chem. 264 14 (1989) 8164-8170
    • (1989) J. Biol. Chem. , vol.264 , Issue.14 , pp. 8164-8170
    • Ward, D.M.1    Ajioka, R.2    Kaplan, J.3
  • 28
    • 0026833077 scopus 로고
    • Mathematical model for the effects of epidermal growth factor receptor trafficking dynamics on fibroblast proliferation responses
    • Starbuck C., and Lauffenburger D.A. Mathematical model for the effects of epidermal growth factor receptor trafficking dynamics on fibroblast proliferation responses. Biotechnol. Prog. 8 2 (1992) 132-143
    • (1992) Biotechnol. Prog. , vol.8 , Issue.2 , pp. 132-143
    • Starbuck, C.1    Lauffenburger, D.A.2
  • 31
    • 0026136104 scopus 로고
    • A globally convergent augmented Langrangian algorithm for optimization with general constraints and simple bounds
    • Conn A.R., Gould N.I.M., and Toint P.L. A globally convergent augmented Langrangian algorithm for optimization with general constraints and simple bounds. SIAM J. Numer. Analy. 28 2 (1991) 545-572
    • (1991) SIAM J. Numer. Analy. , vol.28 , Issue.2 , pp. 545-572
    • Conn, A.R.1    Gould, N.I.M.2    Toint, P.L.3
  • 32
    • 0031537979 scopus 로고    scopus 로고
    • A globally convergent Lagrangian barrier algorithm for optimization with general inequality constraints and simple bounds
    • Conn A.R., Gould N., and Toint P.L. A globally convergent Lagrangian barrier algorithm for optimization with general inequality constraints and simple bounds. Math. Comput. 66 217 (1997) 261-288
    • (1997) Math. Comput. , vol.66 , Issue.217 , pp. 261-288
    • Conn, A.R.1    Gould, N.2    Toint, P.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.