메뉴 건너뛰기




Volumn 8, Issue 3, 2008, Pages 472-484

Toward a global database for the molecular typing of Saccharomyces cerevisiae strains

Author keywords

FLO8; Microsatellites; Saccharomyces cerevisiae; SNPs

Indexed keywords

ALLELE; ARTICLE; BEVERAGE; DATA BASE; FERMENTATION; FERMENTED PRODUCT; FLOCCULATION; FUNGAL STRAIN; FUNGUS HYPHAE; GENE LOCUS; GENETIC VARIABILITY; MICROSATELLITE MARKER; MOLECULAR TYPING; NONHUMAN; PHYLOGENY; SACCHAROMYCES CEREVISIAE; SINGLE NUCLEOTIDE POLYMORPHISM; URUGUAY; WINE; YEAST;

EID: 42549092674     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/j.1567-1364.2008.00361.x     Document Type: Article
Times cited : (30)

References (56)
  • 2
    • 34548383001 scopus 로고    scopus 로고
    • EuMicroSatdb: A database for microsatellites in the sequenced genomes of eukaryotes
    • Aishwarya V, Grover A Sharma PC (2007) EuMicroSatdb: a database for microsatellites in the sequenced genomes of eukaryotes. BMC Genomics 8 : 225.
    • (2007) BMC Genomics , vol.8 , pp. 225
    • Aishwarya, V.1    Grover, A.2    Sharma, P.C.3
  • 4
    • 33645101633 scopus 로고    scopus 로고
    • Application of multi locus sequence typing to the analysis of the biodiversity of indigenous Saccharomyces cerevisiae wine yeasts from Lebanon
    • Ayoub MJ, Legras JL, Saliba R Gaillardin C (2006) Application of multi locus sequence typing to the analysis of the biodiversity of indigenous Saccharomyces cerevisiae wine yeasts from Lebanon. J Appl Microbiol 100 : 699 711.
    • (2006) J Appl Microbiol , vol.100 , pp. 699-711
    • Ayoub, M.J.1    Legras, J.L.2    Saliba, R.3    Gaillardin, C.4
  • 5
    • 28944446726 scopus 로고    scopus 로고
    • Implications of nitrogen nutrition for grapes, fermentation and wine
    • Bell SJ Henschke PA (2005) Implications of nitrogen nutrition for grapes, fermentation and wine. Aust J Grape Wine Res 11 : 242 295.
    • (2005) Aust J Grape Wine Res , vol.11 , pp. 242-295
    • Bell, S.J.1    Henschke, P.A.2
  • 6
    • 28344443357 scopus 로고    scopus 로고
    • Application of SNPs for assessing biodiversity and phylogeny among yeast strains
    • Ben-Ari G, Zenvirth D, Sherman A, Simchen G, Lavi U Hillel J (2005) Application of SNPs for assessing biodiversity and phylogeny among yeast strains. Heredity 95 : 493 501.
    • (2005) Heredity , vol.95 , pp. 493-501
    • Ben-Ari, G.1    Zenvirth, D.2    Sherman, A.3    Simchen, G.4    Lavi, U.5    Hillel, J.6
  • 7
    • 22944471282 scopus 로고    scopus 로고
    • Evolutionary sequence analysis of complete eukaryote genomes
    • Blair JE, Shah P Hedges SB (2005) Evolutionary sequence analysis of complete eukaryote genomes. BMC Bioinform 6 : 53.
    • (2005) BMC Bioinform , vol.6 , pp. 53
    • Blair, J.E.1    Shah, P.2    Hedges, S.B.3
  • 8
    • 0034759188 scopus 로고    scopus 로고
    • Analysis of microsatellite markers of Candida albicans used for rapid typing
    • Botterel F, Desterke C, Costa C Bretagne S (2001) Analysis of microsatellite markers of Candida albicans used for rapid typing. J Clin Microbiol 39 : 4076 4081.
    • (2001) J Clin Microbiol , vol.39 , pp. 4076-4081
    • Botterel, F.1    Desterke, C.2    Costa, C.3    Bretagne, S.4
  • 9
    • 38449101900 scopus 로고    scopus 로고
    • Short tandem repeat typing technologies used in human identity testing
    • Butler JM (2007) Short tandem repeat typing technologies used in human identity testing. Biotechniques 43 : Sii Sv.
    • (2007) Biotechniques , vol.43
    • Butler, J.M.1
  • 10
    • 0031689604 scopus 로고    scopus 로고
    • New potential cell wall glucanases of Saccharomyces cerevisiae and their involvement in mating
    • Cappellaro C, Mrsa V Tanner W (1998) New potential cell wall glucanases of Saccharomyces cerevisiae and their involvement in mating. J Bacteriol 180 : 5030 5037.
    • (1998) J Bacteriol , vol.180 , pp. 5030-5037
    • Cappellaro, C.1    Mrsa, V.2    Tanner, W.3
  • 11
    • 0000156374 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza LL Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. Evolution 21 : 550 570.
    • (1967) Evolution , vol.21 , pp. 550-570
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 12
    • 0021836161 scopus 로고
    • Transcriptional regulation of the MET3 gene of Saccharomyces cerevisiae
    • Cherest H, Nguyen NT Surdin-Kerjan Y (1985) Transcriptional regulation of the MET3 gene of Saccharomyces cerevisiae. Gene 34 : 269 281.
    • (1985) Gene , vol.34 , pp. 269-281
    • Cherest, H.1    Nguyen, N.T.2    Surdin-Kerjan, Y.3
  • 13
    • 34547108086 scopus 로고    scopus 로고
    • Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
    • Clark RM, Schweikert G, Toomajian C et al 2007) Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 317 : 338 342.
    • (2007) Science , vol.317 , pp. 338-342
    • Clark, R.M.1    Schweikert, G.2    Toomajian, C.3    Al, E.4
  • 14
    • 28444467392 scopus 로고    scopus 로고
    • Quantitative trait loci mapped to single-nucleotide resolution in yeast
    • Deutschbauer AM Davis RW (2005) Quantitative trait loci mapped to single-nucleotide resolution in yeast. Nat Genet 37 : 1333 1340.
    • (2005) Nat Genet , vol.37 , pp. 1333-1340
    • Deutschbauer, A.M.1    Davis, R.W.2
  • 15
    • 0032539711 scopus 로고    scopus 로고
    • Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
    • Field D Wills C (1998) Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc Natl Acad Sci USA 95 : 1647 1652.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1647-1652
    • Field, D.1    Wills, C.2
  • 16
    • 0026588787 scopus 로고
    • Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: Regulation by starvation and RAS
    • Gimeno CJ, Ljungdahl PO, Styles CA Fink GR (1992) Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS. Cell 68 : 1077 1090.
    • (1992) Cell , vol.68 , pp. 1077-1090
    • Gimeno, C.J.1    Ljungdahl, P.O.2    Styles, C.A.3    Fink, G.R.4
  • 19
    • 0025744965 scopus 로고
    • Identification of the skeletal remains of a murder victim by DNA analysis
    • Hagelberg E, Gray IC Jeffreys AJ (1991) Identification of the skeletal remains of a murder victim by DNA analysis. Nature 352 : 427 429.
    • (1991) Nature , vol.352 , pp. 427-429
    • Hagelberg, E.1    Gray, I.C.2    Jeffreys, A.J.3
  • 20
    • 34748886657 scopus 로고    scopus 로고
    • PAST: Paleontological statistics software package for education and data analysis
    • Hammer Ø, Harper DAT Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontolog Electron 4 : 9.
    • (2001) Palaeontolog Electron , vol.4 , pp. 9
    • Hammer Ø1    Harper, D.A.T.2    Ryan, P.D.3
  • 21
    • 0029962689 scopus 로고    scopus 로고
    • Inactivation of MET10 in brewer's yeast specifically increases SO2 formation during beer production
    • Hansen J Kielland-Brandt MC (1996) Inactivation of MET10 in brewer's yeast specifically increases SO2 formation during beer production. Nat Biotechnol 14 : 1587 1591.
    • (1996) Nat Biotechnol , vol.14 , pp. 1587-1591
    • Hansen, J.1    Kielland-Brandt, M.C.2
  • 22
    • 20844442964 scopus 로고    scopus 로고
    • Variation in efficiency of DNA mismatch repair at different sites in the yeast genome
    • Hawk JD, Stefanovic L, Boyer JC, Petes TD Farber RA (2005) Variation in efficiency of DNA mismatch repair at different sites in the yeast genome. Proc Natl Acad Sci USA 102 : 8639 8643.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 8639-8643
    • Hawk, J.D.1    Stefanovic, L.2    Boyer, J.C.3    Petes, T.D.4    Farber, R.A.5
  • 25
    • 1842430910 scopus 로고    scopus 로고
    • Microsatellite PCR profiling of Saccharomyces cerevisiae strains during wine fermentation
    • Howell KS, Bartowsky EJ, Fleet GH Henschke PA (2004) Microsatellite PCR profiling of Saccharomyces cerevisiae strains during wine fermentation. Lett Appl Microbiol 38 : 315 320.
    • (2004) Lett Appl Microbiol , vol.38 , pp. 315-320
    • Howell, K.S.1    Bartowsky, E.J.2    Fleet, G.H.3    Henschke, P.A.4
  • 26
    • 34249053477 scopus 로고    scopus 로고
    • Genetic dissection of ethanol tolerance in the budding yeast Saccharomyces cerevisiae
    • Hu XH, Wang MH, Tan T, Li JR, Yang H, Leach L, Zhang RM Luo ZW (2007) Genetic dissection of ethanol tolerance in the budding yeast Saccharomyces cerevisiae. Genetics 175 : 1479 1487.
    • (2007) Genetics , vol.175 , pp. 1479-1487
    • Hu, X.H.1    Wang, M.H.2    Tan, T.3    Li, J.R.4    Yang, H.5    Leach, L.6    Zhang, R.M.7    Luo, Z.W.8
  • 27
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti MV, Ranjekar PK Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18 : 1161 1167.
    • (2001) Mol Biol Evol , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 28
    • 33644745112 scopus 로고    scopus 로고
    • Ecological and evolutionary genomics of Saccharomyces cerevisiae
    • Landry CR, Townsend JP, Hartl DL Cavalieri D (2006) Ecological and evolutionary genomics of Saccharomyces cerevisiae. Mol Ecol 15 : 575 591.
    • (2006) Mol Ecol , vol.15 , pp. 575-591
    • Landry, C.R.1    Townsend, J.P.2    Hartl, D.L.3    Cavalieri, D.4
  • 29
    • 19944415015 scopus 로고    scopus 로고
    • Selection of hypervariable microsatellite loci for the characterization of Saccharomyces cerevisiae strains
    • Legras JL, Ruh O, Merdinoglu D Karst F (2005) Selection of hypervariable microsatellite loci for the characterization of Saccharomyces cerevisiae strains. Int J Food Microbiol 102 : 73 83.
    • (2005) Int J Food Microbiol , vol.102 , pp. 73-83
    • Legras, J.L.1    Ruh, O.2    Merdinoglu, D.3    Karst, F.4
  • 30
    • 34248192358 scopus 로고    scopus 로고
    • Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
    • Legras JL, Merdinoglu D, Cornuet JM Karst F (2007) Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol Ecol 16 : 2091 2102.
    • (2007) Mol Ecol , vol.16 , pp. 2091-2102
    • Legras, J.L.1    Merdinoglu, D.2    Cornuet, J.M.3    Karst, F.4
  • 31
    • 33846486106 scopus 로고    scopus 로고
    • Allele diversity among genes of the sulfate reduction pathway in wine strains of Saccharomyces cerevisiae
    • Linderholm AL, Olineka TL, Hong Y Bisson LF (2006) Allele diversity among genes of the sulfate reduction pathway in wine strains of Saccharomyces cerevisiae. Am J Enol Vitic 57 : 431 440.
    • (2006) Am J Enol Vitic , vol.57 , pp. 431-440
    • Linderholm, A.L.1    Olineka, T.L.2    Hong, Y.3    Bisson, L.F.4
  • 32
    • 0029914164 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth
    • Liu H, Styles CA Fink GR (1996) Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth. Genetics 144 : 967 978.
    • (1996) Genetics , vol.144 , pp. 967-978
    • Liu, H.1    Styles, C.A.2    Fink, G.R.3
  • 33
    • 14944361542 scopus 로고    scopus 로고
    • Typing of Saccharomyces cerevisiae clinical strains by using microsatellite sequence polymorphism
    • Malgoire JY, Bertout S, Renaud F, Bastide JM Mallie M (2005) Typing of Saccharomyces cerevisiae clinical strains by using microsatellite sequence polymorphism. J Clin Microbiol 43 : 1133 1137.
    • (2005) J Clin Microbiol , vol.43 , pp. 1133-1137
    • Malgoire, J.Y.1    Bertout, S.2    Renaud, F.3    Bastide, J.M.4    Mallie, M.5
  • 34
    • 0742269677 scopus 로고    scopus 로고
    • Minisatellites in Saccharomyces cerevisiae genes encoding cell wall proteins: A new way towards wine strain characterisation
    • Marinangeli P, Angelozzi D, Ciani M, Clementi F Mannazzu I (2004) Minisatellites in Saccharomyces cerevisiae genes encoding cell wall proteins: a new way towards wine strain characterisation. FEMS Yeast Res 4 : 427 435.
    • (2004) FEMS Yeast Res , vol.4 , pp. 427-435
    • Marinangeli, P.1    Angelozzi, D.2    Ciani, M.3    Clementi, F.4    Mannazzu, I.5
  • 35
    • 35448937667 scopus 로고    scopus 로고
    • Efficient use of DNA molecular markers to construct industrial yeast strains
    • Marullo P, Yvert G, Bely M, Aigle M Dubourdieu D (2007) Efficient use of DNA molecular markers to construct industrial yeast strains. FEMS Yeast Res 7 : 1295 1306.
    • (2007) FEMS Yeast Res , vol.7 , pp. 1295-1306
    • Marullo, P.1    Yvert, G.2    Bely, M.3    Aigle, M.4    Dubourdieu, D.5
  • 37
    • 0031827129 scopus 로고    scopus 로고
    • Species identification and virulence attributes of Saccharomyces boulardii (nom. inval.)
    • McCullough MJ, Clemons KV, McCusker JH Stevens DA (1998) Species identification and virulence attributes of Saccharomyces boulardii (nom. inval.). J Clin Microbiol 36 : 2613 2617.
    • (1998) J Clin Microbiol , vol.36 , pp. 2613-2617
    • McCullough, M.J.1    Clemons, K.V.2    McCusker, J.H.3    Stevens, D.A.4
  • 38
    • 0028004510 scopus 로고
    • Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae
    • McCusker JH, Clemons KV, Stevens DA Davis RW (1994) Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae. Infect Immun 62 : 5447 5455.
    • (1994) Infect Immun , vol.62 , pp. 5447-5455
    • McCusker, J.H.1    Clemons, K.V.2    Stevens, D.A.3    Davis, R.W.4
  • 39
    • 84907113294 scopus 로고
    • Saccharomyces boulardii: A review of an innovative biotherapeutic agent
    • McFarland LV Bernasconi P (1993) Saccharomyces boulardii: a review of an innovative biotherapeutic agent. Microb Ecol Health Dis 343 : 171 172.
    • (1993) Microb Ecol Health Dis , vol.343 , pp. 171-172
    • McFarland, L.V.1    Bernasconi, P.2
  • 40
    • 33845603215 scopus 로고    scopus 로고
    • Diversity of Saccharomyces strains on grapes and winery surfaces: Analysis of their contribution to fermentative flora of Malbec wine from Mendoza (Argentina) during two consecutive years
    • Mercado L, Dalcero A, Masuelli R Combina M (2007) Diversity of Saccharomyces strains on grapes and winery surfaces: analysis of their contribution to fermentative flora of Malbec wine from Mendoza (Argentina) during two consecutive years. Food Microbiol 24 : 403 412.
    • (2007) Food Microbiol , vol.24 , pp. 403-412
    • Mercado, L.1    Dalcero, A.2    Masuelli, R.3    Combina, M.4
  • 42
    • 42549115254 scopus 로고
    • Etudes sur le vin. Paris, Impr. Imperiale.
    • Pasteur L (1866) Etudes sur le vin. Paris, Impr. Imperiale.
    • (1866)
    • Pasteur, L.1
  • 43
    • 4544319040 scopus 로고    scopus 로고
    • Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing
    • Pearson T, Busch JD, Ravel J et al 2004) Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci USA 101 : 13536 13541.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 13536-13541
    • Pearson, T.1    Busch, J.D.2    Ravel, J.3    Al, E.4
  • 46
    • 33847050594 scopus 로고    scopus 로고
    • The genetic structure of fermentative vineyard-associated Saccharomyces cerevisiae populations revealed by microsatellite analysis
    • Schuller D Casal M (2007) The genetic structure of fermentative vineyard-associated Saccharomyces cerevisiae populations revealed by microsatellite analysis. Antonie Van Leeuwenhoek 91 : 137 150.
    • (2007) Antonie Van Leeuwenhoek , vol.91 , pp. 137-150
    • Schuller, D.1    Casal, M.2
  • 47
    • 0033765632 scopus 로고    scopus 로고
    • Characterization of hydrogen sulfide formation in commercial and natural wine isolates of Saccharomyces
    • Spiropoulos A, Tanaka J, Flerianos I Bisson LF (2000) Characterization of hydrogen sulfide formation in commercial and natural wine isolates of Saccharomyces. Am J Enol Vitic 51 : 233 248.
    • (2000) Am J Enol Vitic , vol.51 , pp. 233-248
    • Spiropoulos, A.1    Tanaka, J.2    Flerianos, I.3    Bisson, L.F.4
  • 48
    • 0027306173 scopus 로고
    • Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
    • Strand M, Prolla TA, Liskay RM Petes TD (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365 : 274 276.
    • (1993) Nature , vol.365 , pp. 274-276
    • Strand, M.1    Prolla, T.A.2    Liskay, R.M.3    Petes, T.D.4
  • 49
    • 3042521076 scopus 로고    scopus 로고
    • The distinct morphogenic states of Candida albicans
    • Sudbery P, Gow N Berman J (2004) The distinct morphogenic states of Candida albicans. Trends Microbiol 12 : 317 324.
    • (2004) Trends Microbiol , vol.12 , pp. 317-324
    • Sudbery, P.1    Gow, N.2    Berman, J.3
  • 50
    • 42549153316 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 10 : 1093.
    • (2007) Mol Biol Evol , vol.10 , pp. 1093
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 51
    • 19944427794 scopus 로고    scopus 로고
    • Development of a standard set of microsatellite reference alleles for identification of grape cultivars
    • This P, Jung A, Boccacci P et al 2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor Appl Genet 109 : 1448 1458.
    • (2004) Theor Appl Genet , vol.109 , pp. 1448-1458
    • This, P.1    Jung, A.2    Boccacci, P.3    Al, E.4
  • 52
    • 33644839600 scopus 로고    scopus 로고
    • Flocculation, adhesion and biofilm formation in yeasts
    • Verstrepen KJ Klis FM (2006) Flocculation, adhesion and biofilm formation in yeasts. Mol Microbiol 60 : 5 15.
    • (2006) Mol Microbiol , vol.60 , pp. 5-15
    • Verstrepen, K.J.1    Klis, F.M.2
  • 53
    • 25144494777 scopus 로고    scopus 로고
    • Intragenic tandem repeats generate functional variability
    • Verstrepen KJ, Jansen A, Lewitter F Fink GR (2005) Intragenic tandem repeats generate functional variability. Nat Genet 37 : 986 990.
    • (2005) Nat Genet , vol.37 , pp. 986-990
    • Verstrepen, K.J.1    Jansen, A.2    Lewitter, F.3    Fink, G.R.4
  • 54
    • 0032524383 scopus 로고    scopus 로고
    • Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
    • Wang DG, Fan JB, Siao CJ et al 1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280 : 1077 1082.
    • (1998) Science , vol.280 , pp. 1077-1082
    • Wang, D.G.1    Fan, J.B.2    Siao, C.J.3    Al, E.4
  • 56
    • 0034677907 scopus 로고    scopus 로고
    • Biochemical characterization and subcellular localization of the sterol C-24(28) reductase, erg4p, from the yeast Saccharomyces cerevisiae
    • Zweytick D, Hrastnik C, Kohlwein SD Daum G (2000) Biochemical characterization and subcellular localization of the sterol C-24(28) reductase, erg4p, from the yeast Saccharomyces cerevisiae. FEBS Lett 470 : 83 87.
    • (2000) FEBS Lett , vol.470 , pp. 83-87
    • Zweytick, D.1    Hrastnik, C.2    Kohlwein, S.D.3    Daum, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.