Molecular typing of wine yeast strains Saccharomyces bayanus var. uvarum using microsatellite markers

Systematic and Applied Microbiology

Volumn 30, Issue 1, 2007, Pages 75-82

  Masneuf Pomarede I ^a   Le Jeune, C ^b   Durrens, P ^c   Lollier, M ^b   Aigle, M ^d   Dubourdieu, D ^c  

^a ENITA de Bordeaux   (France)

^b UNIVERSITÉ DE HAUTE ALSACE   (France)

^c UNIVERSITÉ DE BORDEAUX   (France)

^d Institut de Biochimie et Genetique Cellulaires   (France)

Author keywords

Hybrid; Microsatellite; Molecular typing; Saccharomyces bayanus var. uvarum; Wine yeast

Indexed keywords

GENOMIC DNA;

ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; DNA SEQUENCE; ECOLOGY; FUNGAL STRAIN; FUNGUS IDENTIFICATION; GEOGRAPHY; HOMOZYGOTE; KARYOTYPING; MICROBIOLOGY; MICROSATELLITE MARKER; MOLECULAR TYPING; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES; SACCHAROMYCES BAYANUS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES UVARUM; TAXONOMY; WINE; YEAST;

SACCHAROMYCES CEREVISIAE; SACCHAROMYCES UVARUM;

EID: 33845891910     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2006.02.006     Document Type: Article

References (32)

1. Benzecri J.P. Correspondence Analysis Handbook (1992), Marcel Dekker, New York
2. Bon E., Neuvéglise C., Casaregola S., Artiguenave F., Wincker P., Aigle M., and Durrens P. Genomic exploration of the hemiascomycetous yeasts: 5. Saccharomyces bayanus var. uvarum. FEBS Lett. 487 (2000) 37-41
3. Bowers J., Boursiquot J.M., This P., Chu K., Johansson H., and Meredith C. Historical genetics: the parentage of chardonnay, gamay and other wine grapes of Northeastern France. Science 285 5433 (1999) 1562-1565
4. Cliften P., Sudarsanam P., Desikan A., Fulton L., Fulton B., Majors J., Waterston R., Cohen B.A., and Johnston M. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301 (2003) 71-76
5. Demuyter C., Lollier M., Legras J.L., and Le Jeune C. Predominance of Saccharomyces uvarum during spontaneous alcoholic fermentation for three consecutive years in an Alsatian winery. J. Appl. Microbiol. 97 (2004) 1140-1148
6. D. Dubourdieu, T. Tominaga, I. Masneuf, C. Peyrot des Gachons, M.L. Murat, The role of yeasts in grape flavor development during fermentation: the example of Sauvignon blanc, Proceedings of ASEV 50th Anniversary Meeting, Seattle; Am. J. Enol. Vitic. 51 (5) (2000) 196-203.
7. Fernandez-Espinar M.T., Barrio E., and Querol A. Analysis of the genetic variability in the species of the Saccharomyces sensu stricto complex. Yeast 20 (2003) 1213-1226
8. Field D., and Wills C. Abundant microsatellite polymorphism in Saccharomyces cerevisiae and the different distributions of microsatellites in eight prokaryotes and Saccharomyces cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc. Natl. Acad. Sci. USA 95 (1998) 1647-1652
9. Gonzalez Techera A., Jubany S., Carrau F.M., and Gaggero C. Differentiation of industrial wine yeast strains using microsatellite markers. Lett. Appl. Microbiol. 33 1 (2001) 71-75
10. Guillamon J.M., Barrio E., Huerta T., and Querol A. Rapid characterisation of four species of the Saccharomyces sensu stricto complex according to mitochondrial DNA patterns. Int. J. Syst. Bacteriol. 44 (1994) 708-714
11. Hennequin C., Thierry A., Richard G.F., Lecointre G., Nguyen H.V., Gaillardin C., and Dujon B. Microsatellite typing as a new tool for identification of Saccharomyces cerevisiae strains. J. Clin. Microbiol. (2001) 551-559
12. Howell K.S., Baretowsky E.J., Fleet G.H., and Henschke P.A. Microsatellite PCR profiling of Saccharomyces cerevisiae strains during wine fermentation. Lett. Appl. Microbiol. 38 (2004) 315-320
13. Kellis M., Patterson N., Endrizzi M., Birren B., and Lander E.S. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423 (2003) 241-254
14. Kishimoto M., Soma E., and Goto S.h. Classification of cryophilic wine yeasts based on electrophoretic kariotypes, G+C content and DNA similarity. J. Gen. Appl. Microbiol. 40 (1994) 83-93
15. Kurtzman C.P. Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res. 4 (2003) 233-245
16. Legras J.L., Ruh O., Merdinoglu D., and Karst F. Selection of microsatellite loci for the characterisation of Saccharomyces cerevisiae strains. Int. J. Food Microbiol. 102 (2005) 73-83
17. Masneuf I., Aigle M., and Dubourdieu D. Délimitation des espèces Saccharomyces cerevisiae et Saccharomyces bayanus par l'analyse PCR/RFLP du gène MET2. J. Int. Sci. Vigne Vin 30 (1996) 15-21
18. Masneuf I., Hansen J., Groth C., Piskur J., and Dubourdieu D. New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains. Appl. Environ. Microbiol. Oct. (1998) 3887-3892
19. Masneuf I., Murat M.L., Naumov G., Tominaga T., and Dubourdieu D. Hybrids Saccharomyces cerevisiae×Saccharomyces bayanus var. uvarum having a high liberating ability of some sulfur varietal aromas of Vitis vinifera Sauvignon blanc wines. J. Int. Sci. Vigne Vin 36 (2002) 205-212
20. Naumov G.I. Saccharomyces bayanus var. uvarum comb. nov., a new variety established by genetic analysis. Microbiologica 69 (2000) 410-414
21. Naumov G.I., Masneuf I., Naumova H., Aigle M., and Dubourdieu D. Association of Saccharomyces bayanus var. uvarum with some French wines: genetic analysis of yeast populations. Res. Microbiol. 151 (2000) 683-691
22. Naumov G.I., Naumova E.S., Lanto R.A., Louis E.J., and Korhola M. Genetic homology between Saccharomyces cerevisiae and its sibling species S. paradoxus and S. bayanus: electrophoretic karyotypes. Yeast 8 (1992) 599-612
23. Naumov G.I., Naumova E., and Gaillardin C. Genetic and karyotypic identification of wine Saccharomyces bayanus yeasts isolated in France and Italy. Syst. Appl. Microbiol. 16 (1993) 274-279
24. Naumov G.I., Naumova H., Antunovics Z., and Sipiczki M. Saccharomyces bayanus var. uvarum in Tokaj wine-making of Slovakia and Hungary. Appl. Microbiol. Biotechnol. 59 (2002) 727-730
25. Naumova E.S., Bulat S.A., Mironenko N.V., and Naumov G.I. Differentiation of six sibling species in the Saccharomyces sensu stricto complex by multilocus enzyme electrophoresis and UP-PCR analysis. Antonie van Leeuwenhoek 83 (2003) 155-166
26. Nguyen H.V., and Gaillardin C. Two subgroups within the Saccharomyces bayanus species evidenced by PCR amplification and restriction polymorphism of the non-transcribed spacer 2 in the ribosomal DNA unit. Syst. Appl. Microbiol. 20 (1997) 286-294
27. Nguyen H.V., Lepingle A., and Gaillardin C. Molecular typing demonstrate homogeneity of Saccharomyces uvarum strains and reveals the existence of hybrids between Saccharomyces uvarum and Saccharomyces cerevisiae, including the Saccharomyces bayanus type strain CBS 380. Syst. Appl. Microbiol. 23 (2000) 71-85
28. Perez M.A., Gallego F.J., Martinez I., and Hidalgo P. Detection, distribution and selection of microsatellites (SSRs) in the genome of the yeast Saccharomyces cerevisiae as molecular markers. Lett. Appl. Microbiol. 33 6 (2001) 461-466
29. Pulvirenti A., Nguyen H.V., Caggia C., Guidici P., Rainieri S., and Zambonelli C. Saccharomyces uvarum, a proper species within Saccharomyces sensu stricto. FEMS Microbiol. Lett. 192 (2000) 191-196
30. Rainieri S., Zambonelli C., Hallsworth J.E., Pulvirenti A., and Guidici P. Saccharomyces uvarum, a distinct group within Saccharomyces sensu stricto. FEMS Microbiol. Lett. 177 (1999) 177-185
31. Richard G.F., Hennequin A., Thierry A., and Dujon B. Trinucleotide repeats and other microsatellites in yeasts. Res. Microbiol. 150 (1999) 589-602
32. Torriani S., Zapparoli G., Malacrino P., Suzzi G., and Dellaglio F. Rapid identification and differentiation of Saccharomyces cerevisiae, Saccharomyces bayanus and their hybrids by multiplex PCR. Lett. Appl. Microbiol. 38 (2004) 239-244