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Volumn 1, Issue 6, 2007, Pages 3019-3027

Mass spectrometric identification of N-linked glycopeptides using lectin-mediated affinity capture and glycosylation site-specific stable isotope tagging

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPEPTIDE; LECTIN;

EID: 34548836006     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2006.444     Document Type: Article
Times cited : (138)

References (33)
  • 1
    • 0037338365 scopus 로고    scopus 로고
    • Proteomic analysis of post-translational modifications
    • Mann, M. & Jensen, O.N. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 21, 255-261 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 255-261
    • Mann, M.1    Jensen, O.N.2
  • 3
    • 25844442417 scopus 로고    scopus 로고
    • Altered glycan structures: The molecular basis of congenital disorders of glycosylation
    • Freeze, H.H. & Aebi, M. Altered glycan structures: The molecular basis of congenital disorders of glycosylation. Curr. Opin. Struct. Biol. 15, 490-498 (2005).
    • (2005) Curr. Opin. Struct. Biol , vol.15 , pp. 490-498
    • Freeze, H.H.1    Aebi, M.2
  • 4
    • 25844445924 scopus 로고    scopus 로고
    • Hypoglycosylation with increased fucosylation and branching of serum transferrin N-glycans in untreated galactosemia
    • Sturiale, L. et al. Hypoglycosylation with increased fucosylation and branching of serum transferrin N-glycans in untreated galactosemia. Glycobiology 15, 1268-1276 (2005).
    • (2005) Glycobiology , vol.15 , pp. 1268-1276
    • Sturiale, L.1
  • 5
    • 0004106191 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Varki, A. et al. in Essentials of Glycobiology (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1999).
    • (1999) Essentials of Glycobiology
    • Varki, A.1
  • 6
    • 1342327544 scopus 로고    scopus 로고
    • Statistical analysis of the protein environment of N-glycosylation sites: Implications for occupancy, structure, and folding
    • Petrescu, A.-J. et al. Statistical analysis of the protein environment of N-glycosylation sites: Implications for occupancy, structure, and folding. Glycobiology 14, 103-114 (2004).
    • (2004) Glycobiology , vol.14 , pp. 103-114
    • Petrescu, A.-J.1
  • 8
    • 0001395691 scopus 로고    scopus 로고
    • Fringe is a glycosyltransferase that modifies Notch
    • Moloney, D.J. et al. Fringe is a glycosyltransferase that modifies Notch. Nature 406, 369-375 (2000).
    • (2000) Nature , vol.406 , pp. 369-375
    • Moloney, D.J.1
  • 9
    • 20044377211 scopus 로고    scopus 로고
    • Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans
    • Block, T.M. et al. Use of targeted glycoproteomics to identify serum glycoproteins that correlate with liver cancer in woodchucks and humans. Proc. Natl. Acad. Sci. USA 102, 779-784 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 779-784
    • Block, T.M.1
  • 10
    • 0036651817 scopus 로고    scopus 로고
    • Affinity capturing and gene assignment of soluble glycoproteins produced by the nematode Caenorhabditis elegans
    • Hirabayashi, J. et al. Affinity capturing and gene assignment of soluble glycoproteins produced by the nematode Caenorhabditis elegans. J. Biochem. 132, 103-114 (2002).
    • (2002) J. Biochem , vol.132 , pp. 103-114
    • Hirabayashi, J.1
  • 11
    • 0026698693 scopus 로고
    • 18O-labeled water
    • 18O-labeled water. Anal. Biochem. 205, 151-158 (1992).
    • (1992) Anal. Biochem , vol.205 , pp. 151-158
    • Gonzalez, J.1
  • 12
    • 0038699625 scopus 로고    scopus 로고
    • Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
    • Zhang, H., Li, X.J., Martin, D.B. & Aebersold, R. Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. Nat. Biotechnol. 21, 660-666 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 660-666
    • Zhang, H.1    Li, X.J.2    Martin, D.B.3    Aebersold, R.4
  • 13
    • 0037685263 scopus 로고    scopus 로고
    • Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
    • Kaji, H. et al. Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat. Biotechnol. 21, 667-672 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 667-672
    • Kaji, H.1
  • 14
    • 33645796173 scopus 로고    scopus 로고
    • Strategy for simulation of CID spectra of N-linked oligosaccharides toward glycomics
    • Kameyama, A. et al. Strategy for simulation of CID spectra of N-linked oligosaccharides toward glycomics. J. Proteome Res. 5 808-814 (2006).
    • (2006) J. Proteome Res , vol.5 , pp. 808-814
    • Kameyama, A.1
  • 15
    • 8644240243 scopus 로고    scopus 로고
    • Hydrophilic affinity isolation and MALDI multiple-stage tandem mass spectrometry of glycopeptides for glycoproteomics
    • Wada, Y., Tajiri, M. & Yoshida, S. Hydrophilic affinity isolation and MALDI multiple-stage tandem mass spectrometry of glycopeptides for glycoproteomics. Anal. Chem. 76, 6560-6565 (2004).
    • (2004) Anal. Chem , vol.76 , pp. 6560-6565
    • Wada, Y.1    Tajiri, M.2    Yoshida, S.3
  • 16
    • 3042815335 scopus 로고    scopus 로고
    • Identification of O-linked N-acetylglucosamine proteins in rat skeletal muscle using two-dimensional gel electrophoresis and mass spectrometry
    • Cieniewski-Bernard, C. et al. Identification of O-linked N-acetylglucosamine proteins in rat skeletal muscle using two-dimensional gel electrophoresis and mass spectrometry. Mol. Cell. Proteomics 3, 577-585 (2004).
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 577-585
    • Cieniewski-Bernard, C.1
  • 17
    • 33646900710 scopus 로고    scopus 로고
    • O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry
    • Vosseller, K. et al. O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry. Mol. Cell. Proteomics 5 923-934 (2006).
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 923-934
    • Vosseller, K.1
  • 19
    • 20844457419 scopus 로고    scopus 로고
    • Tagging-via-substrate strategy for probing O-GlcNAc modified proteins
    • Sprung, R. et al. Tagging-via-substrate strategy for probing O-GlcNAc modified proteins. J. Proteome Res. 4, 950-957 (2005).
    • (2005) J. Proteome Res , vol.4 , pp. 950-957
    • Sprung, R.1
  • 20
    • 4444337997 scopus 로고    scopus 로고
    • Exploring the O-GlcNAc proteome: Direct identification of O-GlcNAc-modified proteins from the brain
    • Khidekel, N., Ficarro, S.B., Peters, E.C. & Hsieh-Wilson, L.C. Exploring the O-GlcNAc proteome: Direct identification of O-GlcNAc-modified proteins from the brain. Proc. Natl. Acad. Sci. USA 101, 13132-13137 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13132-13137
    • Khidekel, N.1    Ficarro, S.B.2    Peters, E.C.3    Hsieh-Wilson, L.C.4
  • 21
    • 0001607910 scopus 로고    scopus 로고
    • Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications
    • Wells, L. et al. Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications. Mol. Cell. Proteomics 1, 791-804 (2002).
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 791-804
    • Wells, L.1
  • 22
    • 0033535961 scopus 로고    scopus 로고
    • Accurate quantitation of protein expression and site-specific phosphorylation
    • Oda, Y. et al. Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. USA 96 6591-6596 (1999).
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6591-6596
    • Oda, Y.1
  • 23
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong, S.E. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386 (2002).
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1
  • 24
    • 34250657012 scopus 로고    scopus 로고
    • Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry
    • Shiio, Y. & Aebersold, R. Quantitative proteome analysis using isotope-coded affinity tags and mass spectrometry. Nat. Protocols 1, 139-145 (2006).
    • (2006) Nat. Protocols , vol.1 , pp. 139-145
    • Shiio, Y.1    Aebersold, R.2
  • 25
    • 0037106283 scopus 로고    scopus 로고
    • A direct nanoflow liquid chromatography-tandem mass spectrometry system for interaction proteomics
    • Natsume, T. et al. A direct nanoflow liquid chromatography-tandem mass spectrometry system for interaction proteomics. Anal. Chem. 74, 4725-4733 (2002).
    • (2002) Anal. Chem , vol.74 , pp. 4725-4733
    • Natsume, T.1
  • 26
    • 4444290317 scopus 로고    scopus 로고
    • Automated two-dimensional liquid chromatography/ tandem mass spectrometry for large-scale protein analysis
    • Cold Spring Harbor Press, Cold Spring Harbor, NY
    • Isobe, T. et al. Automated two-dimensional liquid chromatography/ tandem mass spectrometry for large-scale protein analysis. in Proteins and Proteomics 869-876 (Cold Spring Harbor Press, Cold Spring Harbor, NY, 2003).
    • (2003) Proteins and Proteomics , pp. 869-876
    • Isobe, T.1
  • 27
    • 0037274597 scopus 로고    scopus 로고
    • Large-scale identification of Caenorhabditis elegans proteins by multi-dimensional liquid chromatography-tandem mass spectrometry
    • Mawuenyega, K. et al. Large-scale identification of Caenorhabditis elegans proteins by multi-dimensional liquid chromatography-tandem mass spectrometry. J. Proteome Res. 2, 23-35 (2003).
    • (2003) J. Proteome Res , vol.2 , pp. 23-35
    • Mawuenyega, K.1
  • 28
    • 0141922751 scopus 로고    scopus 로고
    • Proteomic snapshot analyses of preribosomal ribonucleoprotein complexes formed at various stages of ribosome biogenesis in yeast and mammalian cells
    • Takahashi, N. et al. Proteomic snapshot analyses of preribosomal ribonucleoprotein complexes formed at various stages of ribosome biogenesis in yeast and mammalian cells. Mass Spectrom. Rev. 22 287-317 (2003).
    • (2003) Mass Spectrom. Rev , vol.22 , pp. 287-317
    • Takahashi, N.1
  • 29
    • 4444236703 scopus 로고    scopus 로고
    • Only a small subset of horizontally transferred chromosomal genes in Escherichia coli are expressed into proteins
    • Taoka, M. et al. Only a small subset of horizontally transferred chromosomal genes in Escherichia coli are expressed into proteins. Mol. Cell. Proteomics 3, 780-787 (2004).
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 780-787
    • Taoka, M.1
  • 30
    • 20144386804 scopus 로고    scopus 로고
    • Large-scale identification of proteins expressed in mouse embryonic stem cells
    • Nagano, K. et al. Large-scale identification of proteins expressed in mouse embryonic stem cells. Proteomics 5, 1346-1361 (2005).
    • (2005) Proteomics , vol.5 , pp. 1346-1361
    • Nagano, K.1
  • 31
    • 29244447154 scopus 로고    scopus 로고
    • Cell surface labeling and mass spectrometry reveal diversity of cell-surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells
    • Nunomura, K. et al. Cell surface labeling and mass spectrometry reveal diversity of cell-surface markers and signaling molecules expressed in undifferentiated mouse embryonic stem cells. Mol. Cell. Proteomics 4, 1968-1976 (2005).
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1968-1976
    • Nunomura, K.1
  • 32
    • 26944474804 scopus 로고    scopus 로고
    • STEM: A software tool for large-scale proteomic data analyses
    • Shinkawa, T. et al. STEM: A software tool for large-scale proteomic data analyses. J. Proteome Res. 4, 1826-1831 (2005).
    • (2005) J. Proteome Res , vol.4 , pp. 1826-1831
    • Shinkawa, T.1
  • 33
    • 0019394076 scopus 로고
    • New detection and separation method for amino acids by high-performance liquid chromatography
    • Ishida, Y., Fujita, T. & Asai, K. New detection and separation method for amino acids by high-performance liquid chromatography. J. Chromatogr. 204, 143-148 (1981).
    • (1981) J. Chromatogr , vol.204 , pp. 143-148
    • Ishida, Y.1    Fujita, T.2    Asai, K.3


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