Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry (Proteomics 8, 7, (1516-1527) DOI: 10.1002/pmic.200700363);Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry

Proteomics

Volumn 8, Issue 7, 2008, Pages 1516-1527

  Mirzaei, Hamid ^a   Baena, Beatriz ^b   Barbas, Coral ^b   Regnier, Fred E ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSIDAD SAN PABLO CEU   (Spain)

Author keywords

Carbonylated proteins; Carbonylation; Oxidized keratin; Plasma oxidized proteins

Indexed keywords

AVIDIN; HYDRAZIDE; KERATIN; OXIDIZED PROTEIN; PROTEIN; REACTIVE OXYGEN METABOLITE; UNCLASSIFIED DRUG;

AFFINITY CHROMATOGRAPHY; ARTICLE; BIOTINYLATION; BLOOD SAMPLING; BRAIN; CONTROLLED STUDY; FEMALE; HEART; KIDNEY; LIVER; NONHUMAN; OXIDATIVE STRESS; PLASMA; PRIORITY JOURNAL; PROTEIN BLOOD LEVEL; PROTEOMICS; RAT; TANDEM MASS SPECTROMETRY;

RATTUS;

EID: 42049099009     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200890044     Document Type: Erratum

References (35)

1. Sohal, R. S., Ku, H. H., Agarwal, S., Forster, M. J., Lal, H., Oxidative damage, mitochondrial oxidant generation and antioxidant defenses during aging and in response to food restriction in the mouse, Mech. Ageing Dev. 1994, 74, 121-133.
2. Stadtman, E. R., Berlett, B. S., Reactive oxygen-mediated protein oxidation in aging and disease, React. Oxygen Species Biol. Syst. 1999, 657-675.
3. Jonasson, T., Oehlin, A.-K., Gottsaeter, A., Hultberg, B., Oehlin, H., Plasma homocysteine and markers for oxidative stress and inflammation in patients with coronary artery disease - a prospective randomized study of vitamin supplementation, Clin. Chem. Lab. Med. 2005, 43, 628-634.
4. Hussain, S. P., Hofseth, L. J., Harris, C. C., Radical causes of cancer, Nat. Rev. Cancer 2003, 3, 276-285.
5. Reyna-Neyra, A., Gonzalez-Aguero, G., Gonzalez-Arenas, A., Villamar-Cruz, O. et al., Cellular modifications related to Alzheimer disease, Educ. Quim. 2002, 13, 240-243.
6. Moreira, P. I., Honda, K., Liu, Q., Aliev, G. et al., Alzheimer's disease and oxidative stress: the old problem remains unsolved, Curr. Med. Chem. 2005, 5, 51-62.
7. Dalle-Donne, I., Giustarini, D., Colombo, R., Rossi, R., Milzani, A., Protein carbonylation in human diseases, Trends Mol. Med. 2003, 9, 169-176.
8. Dalle-Donne, I., Rossi, R., Giustarini, D., Milzani, A., Colombo, R., Protein carbonyl groups as biomarkers of oxidative stress, Clin. Chim. Acta 2003, 329, 23-38.
9. Pennathur, S., Heinecke, J. W., Mechanisms for oxidative stress in diabetic cardiovascular disease, Antioxid. Redox Signal. 2007, 9, 955-969.
10. Pennathur, S., Ido, Y., Heller, J. I., Byun, J. et al., Reactive carbonyls and polyunsaturated fatty acids produce a hydroxyl radical-like species: A potential pathway for oxidative damage of retinal proteins in diabetes, J. Biol. Chem. 2005, 280, 22706-22714.
11. Pennathur, S., Heinecke, J. W., Mechanisms of oxidative stress in diabetes: Implications for the pathogenesis of vascular disease and antioxidant therapy. Front. Biosci. 2004, 9, 565-574.
12. Anderson, N. L., Polanski, M., Pieper, R., Gatlin, T. et al., The human plasma proteome. A nonredundant list developed by combination of four separate sources, Mol. Cell. Proteomics 2004, 3, 311-326.
13. Conrad, C. C., Marshall, P. L., Talent, J. M., Malakowsky, C. A. et al., Oxidized proteins in Alzheimer's plasma, Biochem. Biophys. Res. Commun. 2000, 275, 678-681.
14. Pignatelli, B., Li, C. Q., Boffetta, P., Chen, Q. et al., Nitrated and oxidized plasma proteins in smokers and lung cancer patients. Cancer Res. 2001, 61, 778-784.
15. Choi, J., Malakowsky, C. A., Talent, J. M., Conrad, C. C., Gracy, R. W., Identification of oxidized plasma proteins in Alzheimer's disease, Biochem. Biophys. Res. Commun. 2002, 293, 1566-1570.
16. Di Giacomo, C., Acquaviva, R., Lanteri, R., Licata, F. et al., Nonproteic antioxidant status in plasma of subjects with colon cancer. Exp. Biol. Med. 2003, 228, 525-528.
17. Mirzaei, H., Regnier, F., Affinity chromatographic selection of carbonylated proteins followed by identification of oxidation sites using tandem mass spectrometry. Anal. Chem. 2005, 77, 2386-2392.
18. Yoo, B.-S., Regnier, F. E., Proteomic analysis of carbonylated proteins in two-dimensional gel electrophoresis using avidin-fluorescein affinity staining. Electrophoresis 2004, 25, 1334-1341.
19. McDonald, W. H., Yates John, R., III, Shotgun proteomics and biomarker discovery. Dis. Markers 2002, 18, 99-105.
20. Finn, F. M., Titus, G., Horstman, D., Hofmann, K., Avidin-biotin affinity chromatography: Application to the isolation of human placental insulin receptor, Proc. Natl. Acad. Sci. USA 1984, 81, 7328-7332.
21. Merker, K., Ullrich, O., Schmidt, H., Sitte, N., Grune, T., Stability of the nuclear protein turnover during cellular senescence of human fibroblasts, FASEB J. 2003, 17, 1963-1965, 1910 1096/fj 1903-0177fje.
22. Omenn, G. S., Marcin Adamski, D. J. S., Blackwell, T. W., Menon, R. et al., Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly available database. Proteomics 2005, 5, 3226-3245.
23. Anderson, N. L., Anderson, N. G., The human plasma proteome: History, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1, 845-867.
24. Schlegel, R., Monahan, J. E., Endege, W. O., Gannavarapu, M. et al., Application: WO 2003, Millennium Pharmaceuticals, Inc., USA, Quinn, Angela M, p. 99.
25. Chen, J., Hu, L., Liu, T. H., Lu, Z. H., Shen, Y., Application: WO 2004, F. Hoffmann-La Roche Ag, Switz., Sinogenomax Co. Ltd. Chinese National Human Genomecenter, p. 381.
26. Mouat, M. F., Kolli, K., Orlando, R., Hargrove, J. L., Grider, A., The effects of quercetin on SW480 human colon carcinoma cells: A proteomic study, Nutr. J. 2005, 4, 11.
27. Thiele, J. J., Hsieh, S. N., Briviba, K., Sies, H., Protein oxidation in human stratum corneum: Susceptibility of keratins to oxidation in vitro and presence of a keratin oxidation gradient in vivo. J. Invest. Dermatol. 1999, 113, 335-339.
28. Brownlee, M., Biochemistry and molecular cell biology of diabetic complications, Nature 2001, 414, 813-820.
29. Brownlee, M., The pathobiology of diabetic complications - a unifying mechanism. Diabetes 2005, 54, 1615-1625.
30. Abd El Mohsen, M. M., Iravani, M. M., Spencer, J. P., Rose, S. et al., Age-associated changes in protein oxidation and proteasome activities in rat brain: Modulation by antioxidants, Biochem. Biophys. Res. Commun. 2005, 336, 386-391.
31. Conrad, C. C., Grabowski, D. T., Walter, C. A., Sabia, M., Richardson, A., Using MT(-/-) mice to study metallothionein and oxidative stress, Free Radic. Biol. Med. 2000, 28, 447-462.
32. Dhahbi, J. M., Spindler, S. R., Aging of the liver, Biol. Aging Modulation 2003, 3, 271-291.
33. Buemi, M., Nostro, L., Aloisi, C., Cosentini, V. et al., Kidney aging: From phenotype to genetics, Rejuvenation Res. 2005, 8, 101-109.
34. Lesnefsky, E. J., Tandler, B., Moghaddas, S., Hassan, M. O., Hoppel, C. L., Mitochondrial electron transport and aging in the heart, Adv. Cell Aging Gerontol. 2002, 11, 201-232.
35. Mirzaei, H., Regnier, F., Creation of allotypic active sites during oxidative stress, J. Proteome Res. 2006, 5, 2159-2168.