메뉴 건너뛰기




Volumn 68, Issue 3, 2008, Pages 560-572

Negative regulation of pPS10 plasmid replication: Origin pairing by zipping-up DNA-bound RepA monomers

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CHAPERONE; DIMER; MONOMER; PROTEIN REPA; UNCLASSIFIED DRUG;

EID: 41749116117     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2008.06166.x     Document Type: Article
Times cited : (23)

References (35)
  • 1
    • 0033868538 scopus 로고    scopus 로고
    • Control of plasmid DNA replication by iterons: No longer paradoxical
    • Chattoraj, D.K. (2000) Control of plasmid DNA replication by iterons: no longer paradoxical. Mol Microbiol 37 : 467 476.
    • (2000) Mol Microbiol , vol.37 , pp. 467-476
    • Chattoraj, D.K.1
  • 2
    • 0345832301 scopus 로고    scopus 로고
    • ClusPro: An automated docking and discrimination method for the prediction of protein complexes
    • Comeau, S.R., Gatchell, D.W., Vajda, S. Camacho, C.J. (2004) ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 20 : 45 50.
    • (2004) Bioinformatics , vol.20 , pp. 45-50
    • Comeau, S.R.1    Gatchell, D.W.2    Vajda, S.3    Camacho, C.J.4
  • 3
    • 7644239021 scopus 로고    scopus 로고
    • Origin pairing ('handcuffing') and unpairing in the control of P1 plasmid replication
    • Das, N. Chattoraj, D.K. (2004) Origin pairing ('handcuffing') and unpairing in the control of P1 plasmid replication. Mol Microbiol 54 : 836 849.
    • (2004) Mol Microbiol , vol.54 , pp. 836-849
    • Das, N.1    Chattoraj, D.K.2
  • 6
    • 33751090123 scopus 로고    scopus 로고
    • Early events in the binding of the pPS10 replication protein RepA to single iteron and operator DNA sequences
    • Díaz-López, T., Dávila-Fajardo, C., Blaesing, F., Lillo, M.P. Giraldo, R. (2006) Early events in the binding of the pPS10 replication protein RepA to single iteron and operator DNA sequences. J Mol Biol 364 : 909 920.
    • (2006) J Mol Biol , vol.364 , pp. 909-920
    • Díaz-López, T.1    Dávila-Fajardo, C.2    Blaesing, F.3    Lillo, M.P.4    Giraldo, R.5
  • 7
    • 0029125210 scopus 로고
    • Host growth temperature and a conservative amino acid substitution in the replication protein of pPS10 plasmid influence plasmid host range
    • Fernández-Tresguerres, M.E., Martín, M., García de Viedma, D., Giraldo, R. Díaz-Orejas, R. (1995) Host growth temperature and a conservative amino acid substitution in the replication protein of pPS10 plasmid influence plasmid host range. J Bacteriol 177 : 4377 4384.
    • (1995) J Bacteriol , vol.177 , pp. 4377-4384
    • Fernández-Tresguerres, M.E.1    Martín, M.2    García De Viedma, D.3    Giraldo, R.4    Díaz-Orejas, R.5
  • 8
    • 36849071776 scopus 로고    scopus 로고
    • Defined DNA sequences promote de assembly of a bacterial protein into distinct amyloid nanostructures
    • Giraldo, R. (2007) Defined DNA sequences promote de assembly of a bacterial protein into distinct amyloid nanostructures. Proc Natl Acad Sci USA 104 : 17388 17393.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 17388-17393
    • Giraldo, R.1
  • 9
    • 4344661025 scopus 로고    scopus 로고
    • 20 years of the pPS10 replicon: Insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids
    • Giraldo, R. Fernández-Tresguerres, M.E. (2004) 20 years of the pPS10 replicon: Insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids. Plasmid 52 : 69 83.
    • (2004) Plasmid , vol.52 , pp. 69-83
    • Giraldo, R.1    Fernández-Tresguerres, M.E.2
  • 10
    • 0032479998 scopus 로고    scopus 로고
    • Protein domains and conformational changes in the activation of RepA, a DNA replication initiator
    • Giraldo, R., Andreu, J.M. Díaz-Orejas, R. (1998) Protein domains and conformational changes in the activation of RepA, a DNA replication initiator. EMBO J 17 : 4511 4526.
    • (1998) EMBO J , vol.17 , pp. 4511-4526
    • Giraldo, R.1    Andreu, J.M.2    Díaz-Orejas, R.3
  • 11
    • 0038392686 scopus 로고    scopus 로고
    • A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domain
    • Giraldo, R., Fernández-Tornero, C., Evans, P.R., Díaz-Orejas, R. Romero, A. (2003) A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domain. Nat Struct Biol 10 : 565 571.
    • (2003) Nat Struct Biol , vol.10 , pp. 565-571
    • Giraldo, R.1    Fernández-Tornero, C.2    Evans, P.R.3    Díaz-Orejas, R.4    Romero, A.5
  • 12
    • 0031473847 scopus 로고    scopus 로고
    • Swiss-model and Swiss-PdbViewer: An environment for comparative protein modelling
    • Guex, N. Peitsch, M.C. (1997) Swiss-model and Swiss-PdbViewer: an environment for comparative protein modelling. Electrophoresis 18 : 2714 2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 13
    • 0033198766 scopus 로고    scopus 로고
    • Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution
    • Komori, H., Matsunaga, F., Higuchi, Y., Ishiai, M., Wada, C. Miki, K. (1999) Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution. EMBO J 18 : 4597 4607.
    • (1999) EMBO J , vol.18 , pp. 4597-4607
    • Komori, H.1    Matsunaga, F.2    Higuchi, Y.3    Ishiai, M.4    Wada, C.5    Miki, K.6
  • 14
    • 4344679790 scopus 로고    scopus 로고
    • Participating elements in the replication of iteron containing plasmids
    • In. Funnell, B.E., Phillips, G.J. (eds). Washington, DC: American Society for Microbiology Press, pp.
    • Krüger, R., Rakowski, S.A. Filutowicz, M. (2004) Participating elements in the replication of iteron containing plasmids. In Plasmid Biology. Funnell, B.E., Phillips, G.J. (eds). Washington, DC : American Society for Microbiology Press, pp. 25 45.
    • (2004) Plasmid Biology. , pp. 25-45
    • Krüger, R.1    Rakowski, S.A.2    Filutowicz, M.3
  • 15
    • 18944400736 scopus 로고    scopus 로고
    • Role of, π dimers in coupling ('handcuffing') of plasmid R6K's γ ori iterons
    • Kunnimalaiyaan, S., Inman, R.B., Rakowski, S.A. Filutowicz, M. (2005) Role of, π dimers in coupling ('handcuffing') of plasmid R6K's γ ori iterons. J Bacteriol 187 : 3779 3785.
    • (2005) J Bacteriol , vol.187 , pp. 3779-3785
    • Kunnimalaiyaan, S.1    Inman, R.B.2    Rakowski, S.A.3    Filutowicz, M.4
  • 16
    • 0024386239 scopus 로고
    • Negative control of plasmid R6K replication: Possible role of intermolecular coupling of replication origins
    • McEachern, M.J., Bott, M.A., Tooker, P.A. Helinski, D.R. (1989) Negative control of plasmid R6K replication: Possible role of intermolecular coupling of replication origins. Proc Natl Acad Sci USA 86 : 7942 7946.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 7942-7946
    • McEachern, M.J.1    Bott, M.A.2    Tooker, P.A.3    Helinski, D.R.4
  • 17
    • 0037312815 scopus 로고    scopus 로고
    • Modulation of pPS10 host range by plasmid-encoded RepA initiator protein
    • Maestro, B., Sanz, J.M., Díaz-Orejas, R. Fernández- Tresguerres, E. (2003) Modulation of pPS10 host range by plasmid-encoded RepA initiator protein. J Bacteriol 185 : 1367 1375.
    • (2003) J Bacteriol , vol.185 , pp. 1367-1375
    • Maestro, B.1    Sanz, J.M.2    Díaz-Orejas, R.3    Fernández-Tresguerres, E.4
  • 18
    • 0034858690 scopus 로고    scopus 로고
    • Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria
    • Marx, C.J. Lidstrom, M.E. (2001) Development of improved versatile broad-host-range vectors for use in methylotrophs and other Gram-negative bacteria. Microbiology 147 : 2065 2075.
    • (2001) Microbiology , vol.147 , pp. 2065-2075
    • Marx, C.J.1    Lidstrom, M.E.2
  • 19
    • 0026533673 scopus 로고
    • Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance
    • Miron, A., Mukherjee, S. Bastia, D. (1992) Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance. EMBO J 11 : 1205 1216.
    • (1992) EMBO J , vol.11 , pp. 1205-1216
    • Miron, A.1    Mukherjee, S.2    Bastia, D.3
  • 20
    • 0028230935 scopus 로고
    • Multiple pathways of copy control of γ replicon of R6K: Mechanisms both dependent on and independent of cooperativity of interaction of, π protein with DNA affect the copy number
    • Miron, A., Patel, I. Bastia, D. (1994) Multiple pathways of copy control of γ replicon of R6K: Mechanisms both dependent on and independent of cooperativity of interaction of, π protein with DNA affect the copy number. Proc Natl Acad Sci USA 91 : 6438 6442.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 6438-6442
    • Miron, A.1    Patel, I.2    Bastia, D.3
  • 21
    • 3042605185 scopus 로고    scopus 로고
    • Replication of a unit-copy plasmid F in the bacterial cell cycle: A replication rate function analysis
    • Morrison, P.F. Chattoraj, D.K. (2004) Replication of a unit-copy plasmid F in the bacterial cell cycle: a replication rate function analysis. Plasmid 52 : 13 30.
    • (2004) Plasmid , vol.52 , pp. 13-30
    • Morrison, P.F.1    Chattoraj, D.K.2
  • 22
    • 0028221086 scopus 로고
    • Relaxation of replication control in chaperone-independent initiator mutants of plasmid P1
    • Mukhopadhyay, G., Sozhamannan, S. Chattoraj, D.K. (1994) Relaxation of replication control in chaperone-independent initiator mutants of plasmid P1. EMBO J 3 : 2089 2096.
    • (1994) EMBO J , vol.3 , pp. 2089-2096
    • Mukhopadhyay, G.1    Sozhamannan, S.2    Chattoraj, D.K.3
  • 23
    • 0026556881 scopus 로고
    • Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific of Pseudomonas isolated from Pseudomonas Syringae pv. Savastanoi
    • Nieto, C., Giraldo, R., Fernández-Tresguerres, E. Díaz, R. (1992) Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific of Pseudomonas isolated from Pseudomonas Syringae pv. Savastanoi. J Mol Biol 223 : 415 426.
    • (1992) J Mol Biol , vol.223 , pp. 415-426
    • Nieto, C.1    Giraldo, R.2    Fernández-Tresguerres, E.3    Díaz, R.4
  • 24
    • 0023746642 scopus 로고
    • P1 plasmid replication: Initiator sequestration is adequate to explain control by initiator-binding sites
    • Pal, S.K. Chattoraj, D.K. (1988) P1 plasmid replication: Initiator sequestration is adequate to explain control by initiator-binding sites. J Bacteriol 170 : 3554 3560.
    • (1988) J Bacteriol , vol.170 , pp. 3554-3560
    • Pal, S.K.1    Chattoraj, D.K.2
  • 25
    • 0028064779 scopus 로고
    • Negative control of plasmid DNA replication by iterons
    • Papp, P.P., Mukhopadhyay, G. Chattoraj, D.K. (1994) Negative control of plasmid DNA replication by iterons. J Biol Chem 269 : 23563 23568.
    • (1994) J Biol Chem , vol.269 , pp. 23563-23568
    • Papp, P.P.1    Mukhopadhyay, G.2    Chattoraj, D.K.3
  • 26
    • 0037126609 scopus 로고    scopus 로고
    • Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number
    • Park, K., Han, E., Paulsson, J. Chattoraj, D.K. (2001) Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number. EMBO J 20 : 7323 7332.
    • (2001) EMBO J , vol.20 , pp. 7323-7332
    • Park, K.1    Han, E.2    Paulsson, J.3    Chattoraj, D.K.4
  • 27
    • 33745192288 scopus 로고    scopus 로고
    • Origin inactivation in bacterial DNA replication control
    • Paulsson, J. Chattoraj, D.K. (2006) Origin inactivation in bacterial DNA replication control. Mol Microbiol 61 : 9 15.
    • (2006) Mol Microbiol , vol.61 , pp. 9-15
    • Paulsson, J.1    Chattoraj, D.K.2
  • 29
    • 0001627120 scopus 로고
    • Electron microscopic analysis of nucleic acids and nucleic acid-protein complexes
    • Spiess, E. Lurz, R. (1988) Electron microscopic analysis of nucleic acids and nucleic acid-protein complexes. Methods Microbiol 20 : 293 323.
    • (1988) Methods Microbiol , vol.20 , pp. 293-323
    • Spiess, E.1    Lurz, R.2
  • 30
    • 33845506595 scopus 로고    scopus 로고
    • Crystal structure of, π initiator protein-iteron complex of plasmid R6K: Implications for initiation of plasmid DNA replication
    • Swan, M.K., Bastia, D. Davies, C. (2006) Crystal structure of, π initiator protein-iteron complex of plasmid R6K: implications for initiation of plasmid DNA replication. Proc Natl Acad Sci USA 103 : 18481 18486.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 18481-18486
    • Swan, M.K.1    Bastia, D.2    Davies, C.3
  • 31
    • 0019479019 scopus 로고
    • Direct repeats of the F plasmid incC region express F incompatibility
    • Tolun, A. Helinski, D.R. (1981) Direct repeats of the F plasmid incC region express F incompatibility. Cell 24 : 687 694.
    • (1981) Cell , vol.24 , pp. 687-694
    • Tolun, A.1    Helinski, D.R.2
  • 32
    • 0032570053 scopus 로고    scopus 로고
    • TrfA dimers play a role in copy-number control of RK2 replication
    • Toukdarian, A.E. Helinski, D.R. (1998) TrfA dimers play a role in copy-number control of RK2 replication. Gene 223 : 205 211.
    • (1998) Gene , vol.223 , pp. 205-211
    • Toukdarian, A.E.1    Helinski, D.R.2
  • 33
    • 0033168690 scopus 로고    scopus 로고
    • Regulation of DNA replication by iterons: An interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F plasmid in Escherichia coli
    • Uga, H., Matsunaga, F. Wada, C. (1999) Regulation of DNA replication by iterons: An interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F plasmid in Escherichia coli. EMBO J 18 : 3856 3867.
    • (1999) EMBO J , vol.18 , pp. 3856-3867
    • Uga, H.1    Matsunaga, F.2    Wada, C.3
  • 34
    • 0032582789 scopus 로고    scopus 로고
    • Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfaces
    • Urh, M., Wu, J., Wu, J., Forest, K., Inman, R.B. Filutowicz, M. (1998) Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfaces. J Mol Biol 283 : 619 631.
    • (1998) J Mol Biol , vol.283 , pp. 619-631
    • Urh, M.1    Wu, J.2    Wu, J.3    Forest, K.4    Inman, R.B.5    Filutowicz, M.6
  • 35
    • 29144499348 scopus 로고    scopus 로고
    • Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting
    • Zzaman, S. Bastia, D. (2005) Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting. Mol Cell 20 : 833 843.
    • (2005) Mol Cell , vol.20 , pp. 833-843
    • Zzaman, S.1    Bastia, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.