Structural changes in RepA, a plasmid replication initiator, upon binding to origin DNA

Journal of Biological Chemistry

Volumn 278, Issue 20, 2003, Pages 18606-18616

  Díaz López, Teresa ^a   Lages Gonzalo, Marta ^a   Serrano López, Ana ^a   Alfonso, Carlos ^a   Rivas, Germán ^a   Díaz Orejas, Ramón ^a   Giraldo, Rafael ^a  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOCHEMICAL ENGINEERING; BIOSYNTHESIS; CONFORMATIONS; GENETIC ENGINEERING; HYDROPHOBICITY; MONOMERS; PROTEINS;

MUTATIONS;

DNA SEQUENCES;

ALANINE; CHAPERONE; HELICASE; LEUCINE; LEUCINE ZIPPER PROTEIN; PLASMID DNA; PROTEIN REPA; UNCLASSIFIED DRUG; DNA; DNA BINDING PROTEIN; HISTIDINE; PROTEIN; REPLICATION INITIATOR PROTEIN; TRANSACTIVATOR PROTEIN;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CONFORMATIONAL TRANSITION; DNA BINDING; DNA REPLICATION; NONHUMAN; OPERATOR GENE; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN MOTIF; PSEUDOMONAS; CHEMICAL STRUCTURE; CHEMISTRY; DIMERIZATION; DNA REPLICATION ORIGIN; DOSE RESPONSE; GEL CHROMATOGRAPHY; GENETICS; KINETICS; METABOLISM; MOLECULAR CLONING; MUTATION; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; PSEUDOMONAS AERUGINOSA; SITE DIRECTED MUTAGENESIS; SPECTROFLUOROMETRY; TEMPERATURE; TIME; ULTRACENTRIFUGATION;

ANIMALIA; ARCHAEA; EUKARYOTA; PSEUDOMONAS;

AMINO ACID MOTIFS; CHROMATOGRAPHY, GEL; CLONING, MOLECULAR; DIMERIZATION; DNA; DNA HELICASES; DNA-BINDING PROTEINS; DOSE-RESPONSE RELATIONSHIP, DRUG; HISTIDINE; KINETICS; LEUCINE; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; MUTATION; PLASMIDS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; PROTEINS; PSEUDOMONAS AERUGINOSA; REPLICATION ORIGIN; SPECTROMETRY, FLUORESCENCE; TEMPERATURE; TIME FACTORS; TRANS-ACTIVATORS; ULTRACENTRIFUGATION;

EID: 0037705365     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M212024200     Document Type: Article

References (69)

1. Kornberg, A., and Baker, T. (1992) DNA Replication, 2nd Ed., W. H. Freeman, New York
2. Baker, T. A., and Bell, S. P. (1998) Cell 92, 295-305
3. Lee, D. G., and Bell, S. P. (2000) Curr. Opin. Cell Biol. 12, 280-285
4. Giraldo, R., and Díaz-Orejas, R. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 4938-4943
5. Lee, D. G., Makhov, A. M., Klemm, R. D., Griffith, J. D., and Bell, S. P. (2000) EMBO J. 19, 4774-4782
6. Speck, C., and Messer, W. (2001) EMBO J. 20, 1469-1476
7. Messer, W. (2002) FEMS Microbiol. Rev. 26, 355-374
8. Klemm, R. D., Austin, R. J., and Bell, S. P. (1997) Cell 88, 493-502
9. del Solar, G., Giraldo, R., Ruíz-Echevarría, M. J., Espinosa, M., and Díaz, R. (1998) Microbiol. Mol. Biol. Rev. 62, 434-464
10. Cohen, S., Couturier, M., del Solar, G., Díaz-Orejas, R., Espinosa, M., Giraldo, R., Jánniere, L., Miller, C., Osborn, M., and Thomas, C. M. (2000) in The Horizontal Gene Pool: Bacterial Plasmids and Gene Spread (Thomas, C. M., ed) pp. 1-47, Harwood Academic Publishers, Amsterdam
11. Wickner, S., Hoskins, J., and McKenney, K. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 7903-7907
12. Ishiai, M., Wada, C., Kawasaki, Y., and Yura, T. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 3839-3843
13. García de Viedma, D., Giraldo, R., Ruíz-Echevarría, M. J., Lurz, R., and Díaz-Orejas, R. (1995) J. Mol. Biol. 247, 211-223
14. García de Viedma, D., Giraldo, R., Rivas, G., Fernández-Tresguerres, E., and Díaz-Orejas, R. (1996) EMBO J. 15, 925-934
15. Toukdarian, A., Helinski, D. R., and Perri, S. (1996) J. Biol. Chem. 271, 7072-7078
16. Urh, M., Wu, J., Wu, J., Forest, K., Inman, R. B., and Filutowicz, M. (1998) J. Mol. Biol. 283, 619-631
17. Krüger, R., Konieczny, I., and Filutowicz, M. (2001) J. Mol. Biol. 306, 945-955
18. Nieto, C., Giraldo, R., Fernández-Tresguerres, E., and Díaz, R. (1992) J. Mol. Biol. 223, 415-426
19. Giraldo, R., Nieto, C., Fernández-Tresguerres, M. E., and Díaz, R. (1989) Nature 342, 866
20. García, de Viedma, D., Serrano-López, A., and Díaz-Orejas, R. (1995) Nucleic Acids Res. 23, 5048-5054
21. Giraldo, R., Andreu, J. M., and Díaz-Orejas, R. (1998) EMBO J. 17, 4511-4526
22. Gajiwala, K. S., and Burley, S. K. (2000) Curr. Opin. Struct. Biol. 10, 110-116
23. Liu, J., Smith, C. L., DeRyckere, D., DeAngelis, K., Martin, G. S., and Berger, J. M. (2000) Mol. Cell, 6, 637-648
24. Komori, H., Matsunaga, F., Higuchi, Y., Ishiai, M., Wada, C., and Miki, K. (1999) EMBO J. 18, 4597-4607
25. Kawasaki, Y., Matsunaga, F., Kano, Y., Yura, T., and Wada, C. (1996) Mol. Gen. Genet. 253, 42-49
26. Konieczny, I., Doran, K. S., Helinski, D. R., and Blasina, A. (1997) J. Biol. Chem. 272, 20173-20178
27. Park, K., Mukhopadhyay, S., and Chattoraj, D. K. (1998) J. Biol. Chem. 273, 24906-24911
28. Sharma, R., Kachroo, A., and Bastia, D. (2001) EMBO J. 20, 4577-4587
29. Pacek, M., Konopa, G., and Konieczny, I. (2001) J. Biol. Chem. 276, 23639-23644
30. Chattoraj, D. K. (2000) Mol. Microbiol. 37, 467-476
31. Wickner, S., Skowyra, D., Hoskins, J., and MeKenney, K. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 10345-10349
32. Wickner, S., Gottesman, S., Skowyra, D. F., Hoskins, J., McKenney, K., and Maurizi, M. R. (1994) Proc. Natl. Acad. Sci. U. S. A., 91, 12218-12222
33. Sozhamannan, S., and Chattoraj, D. K. (1993) J. Bacteriol. 175, 3546-3555
34. DasGupta, S., Mukhopadhyay, G., Papp, P. P., Lewis, M. S., and Chattoraj, D. K. (1993) J. Mol. Biol. 232, 23-34
35. Kawasaki, Y., Wada, C., and Yura, T. (1990) Mol. Gen. Genet. 220, 277-282
36. Konieczny, I., and Helinski, D. R. (1997) Proc. Natl. Acad. Sci. U. S. A., 94, 14378-14382
37. Hoskins, J. R., Singh, S. K., Maurizi, M. R., and Wickner, S. (2000) Proc. Natl. Acad. Sci. U. S. A., 97, 8892-8897
38. Ishikawa, T., Beuron, F., Kessel, M., Wickner, S., Maurizi, M. R., and Steven, A. C. (2001) Proc. Natl. Acad. Sci. U. S. A., 98, 4328-4333
39. Dibbens, J. A., Muraiso, K., and Chattoraj, D. K. (1997) Mol. Microbiol. 26, 185-195
40. Mukhopadhyay, G, Sozhamannan, S., and Chattoraj, D. K. (1994) EMBO J. 13, 2089-2096
41. Ingmer, H., Fong, E. L., and Cohen, S. (1995) J. Mol. Biol. 250, 309-314
42. Chattoraj, D. K., Ghirlando, R., Park, K., Dibbens, J. A., and Lewis, M. S. (1996) Genes Cells 1, 189-199
43. Pak, M., and Wickner, S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 4901-4906
44. Spolar, R. S., and Record, T. M., Jr. (1994) Science 263, 777-784
45. Jen-Jacobson, L., Engler, L. E., and Jacobson, L. A. (2000) Structure 8, 1015-1023
46. Fernández-Tresguerres, M. E., Martín, M., García de Viedma, D., Giraldo, R., and Díaz-Orejas, R. (1995) J. Bacteriol. 177, 4377-4384
47. Swack, J. A., Pal, S. K., Mason, R. J., Abeles, A. L., and Chattoraj, D. K. (1987) J. Bacteriol. 169, 3737-3742
48. Brenner, M., and Tomizawa, J.-I. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 405-409
49. Abril, A. M., Salas, M., Andreu, J. M., Hermoso, J. M., and Rivas, G. (1997) Biochemistry 6, 11901-11908
50. Schuck, P., and Rossmanith, P. (2000) Biopolymers 54, 328-341
51. Bohm, G., Muhr, R., and Jaenicke, R. (1992) Prot. Eng. 5, 191-195
52. Durland, R. H., and Helinski, D. R. (1990) J. Bacteriol. 172, 3849-3858
53. Filutowicz, M., McEachern, M. J., and Helinski, D. R. (1986) Proc. Natl. Acad. Sci. U. S. A., 83, 9645-9649
54. Ptitsyn, O. B. (1995) Adv. Prot. Chem. 47, 83-229
55. Dao-Thi, M.-H., Messens, J., Wyns, L., and Backmann, J. (2000) J. Mol. Biol. 299, 1373-1386
56. Viadiu, H., and Aggarwal, A. K. (2000) Mol. Cell 5, 889-895
57. Zheng, N., Fraenkel, E., Pabo, C. O., and Pavletich, N. P. (1999) Genes Dev. 13, 666-674
58. Lima, L. M. T. R., and de Prat-Gay, G. (1997) J. Biol. Chem. 272, 19295-19303
59. Cruickshank, J., Shire, K., Davidson, A. R., Edwards, A. M., and Frappier, L. (2000) J. Biol. Chem. 275, 22273-22277
60. Wang, H., McIntosh, L. P., and Graves, B. J. (2002) J. Biol. Chem. 277, 2225-2233
61. Wu, J., Sektas, M., Chen, D., and Filutowicz, M. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 13967-13972
62. Hoskins, J. R., Kim, S.-Y., and Wickner, S. (2000) J. Biol. Chem. 275, 35361-35367
63. Kim, S.-Y., Sharma, S., Hoskins, J. R., and Wickner, S. (2002) J. Biol. Chem. 277, 44778-44783
64. Giraldo, R., Martin, M., Fernández-Tresguerres, M. E., Nieto, C., and Díaz, R. (1992) in DNA Replication: The Regulatory Mechanisms (Hughes, P., Fanning, E and Kohiyama, M., eds) pp. 225-237, Springer Verlag, Berlin
65. Bukau, B., and Horwich, A. L. (1998) Cell 92, 351-366
66. Goloubinoff, P., Mogk, A., Ben-Zvi, A. P., Tomoyasu, T., and Bukau, B. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 13732-13737
67. Park, K., Han, E., Paulsson, J., and Chattoraj, D. K. (2001) EMBO J. 20, 7323-7332
68. Blasina, A., Kittell, B. L., Toukdarian, A. E., and Helinski, D. R. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 3559-3564
69. Papp, P. P., Mukhopadhyay, G., and Chattoraj, D. K. (1994) J. Biol. Chem. 269, 23563-23568