메뉴 건너뛰기




Volumn 3, Issue 7, 2007, Pages 1223-1231

Population bottlenecks as a potential major shaping force of human genome architecture

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MITOCHONDRIAL DNA;

EID: 34547641090     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.0030119     Document Type: Article
Times cited : (49)

References (42)
  • 1
    • 0019976445 scopus 로고
    • The Alu family of dispersed repetitive sequences
    • Schmid CD, Jelinek WR (1982) The Alu family of dispersed repetitive sequences. Science 216: 1065-1070.
    • (1982) Science , vol.216 , pp. 1065-1070
    • Schmid, C.D.1    Jelinek, W.R.2
  • 2
    • 0142059650 scopus 로고    scopus 로고
    • An Alu transposition model for the origin and expansion of human segmental duplications
    • Bailey JA, Liu G, Eichler EE (2003) An Alu transposition model for the origin and expansion of human segmental duplications. Am J Hum Genet 73: 823-834.
    • (2003) Am J Hum Genet , vol.73 , pp. 823-834
    • Bailey, J.A.1    Liu, G.2    Eichler, E.E.3
  • 3
    • 0024379002 scopus 로고
    • Newly arisen DNA repeats in primate phylogeny
    • Ryan SC, Dugaiczyk A (1989) Newly arisen DNA repeats in primate phylogeny. Proc Natl Acad Sci U S A 86: 9360-9364.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 9360-9364
    • Ryan, S.C.1    Dugaiczyk, A.2
  • 4
    • 23944453340 scopus 로고    scopus 로고
    • Forty million years of independent evolution: A mitochondrial gene and its corresponding nuclear pseudogene in primates
    • Schmitz J, Piskurek O, Zischler H (2005) Forty million years of independent evolution: A mitochondrial gene and its corresponding nuclear pseudogene in primates. J Mol Evol 61: 1-11.
    • (2005) J Mol Evol , vol.61 , pp. 1-11
    • Schmitz, J.1    Piskurek, O.2    Zischler, H.3
  • 5
    • 0035147092 scopus 로고    scopus 로고
    • Biased distribution of inverted and direct Alus in the human genome: Implications for insertion, exclusion, and genome stability
    • Stenger JE, Lobachev KS, Gordenin D, Darden TA, Jurka J, et al. (2001) Biased distribution of inverted and direct Alus in the human genome: Implications for insertion, exclusion, and genome stability. Genome Res 11: 12-27.
    • (2001) Genome Res , vol.11 , pp. 12-27
    • Stenger, J.E.1    Lobachev, K.S.2    Gordenin, D.3    Darden, T.A.4    Jurka, J.5
  • 6
    • 0033019117 scopus 로고    scopus 로고
    • Origin and phylogenetic distribution of Alu DNA repeats: Irreversible events in the evolution of primates
    • Hamdi H, Nishio H, Zielinski R, Dugaiczyk A (1999) Origin and phylogenetic distribution of Alu DNA repeats: Irreversible events in the evolution of primates. J Mol Biol 289: 861-871.
    • (1999) J Mol Biol , vol.289 , pp. 861-871
    • Hamdi, H.1    Nishio, H.2    Zielinski, R.3    Dugaiczyk, A.4
  • 7
    • 0029834015 scopus 로고    scopus 로고
    • Zardoya R, A. M (1996) Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol Biol Evol 13: 933-942.
    • Zardoya R, A. M (1996) Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol Biol Evol 13: 933-942.
  • 8
    • 0037350508 scopus 로고    scopus 로고
    • Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome
    • Liu G, Program NCS, Zhao S, Bailey JA, Sahinalp SC, et al. (2003) Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome. Genome Res 13: 358-368.
    • (2003) Genome Res , vol.13 , pp. 358-368
    • Liu, G.1    Program, N.C.S.2    Zhao, S.3    Bailey, J.A.4    Sahinalp, S.C.5
  • 9
    • 0001603853 scopus 로고
    • Hybridization between the nuclear and kinetoplast DNAs of Leishmania enrietti and between nuclear and mitochondrial DNAs of mouse liver
    • Du Buy HG, Riley FL (1967) Hybridization between the nuclear and kinetoplast DNAs of Leishmania enrietti and between nuclear and mitochondrial DNAs of mouse liver. Proc Natl Acad Sci U S A 57: 790-797.
    • (1967) Proc Natl Acad Sci U S A , vol.57 , pp. 790-797
    • Du Buy, H.G.1    Riley, F.L.2
  • 11
    • 0027213389 scopus 로고
    • The mitochondrial genome on its way to the nucleus: Different stages of gene transfer in higher plants
    • Brennicke A, Grohmann L, Hiesel R, Knoop V, Schuster W (1993) The mitochondrial genome on its way to the nucleus: Different stages of gene transfer in higher plants. FEBS Lett 325: 140-145.
    • (1993) FEBS Lett , vol.325 , pp. 140-145
    • Brennicke, A.1    Grohmann, L.2    Hiesel, R.3    Knoop, V.4    Schuster, W.5
  • 12
    • 0034691074 scopus 로고    scopus 로고
    • Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates
    • Palmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, et al. (2000) Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates. Proc Natl Acad Sci U S A 97: 6960-6966.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6960-6966
    • Palmer, J.D.1    Adams, K.L.2    Cho, Y.3    Parkinson, C.L.4    Qiu, Y.L.5
  • 13
    • 0043197403 scopus 로고    scopus 로고
    • Rates of DNA duplication and mitochondrial insertion in the human genome
    • Bensasson D, Feldman MW, Petrov DA (2003) Rates of DNA duplication and mitochondrial insertion in the human genome. J Mol Evol 57: 343-354.
    • (2003) J Mol Evol , vol.57 , pp. 343-354
    • Bensasson, D.1    Feldman, M.W.2    Petrov, D.A.3
  • 14
    • 0344564146 scopus 로고    scopus 로고
    • A novel mitochondrial DNA-like sequence in the human nuclear genome
    • Herrnstadt C, Clevenger W, Ghosh SS, Anderson C, Fahy E, et al. (1999) A novel mitochondrial DNA-like sequence in the human nuclear genome. Genomics 60: 67-77.
    • (1999) Genomics , vol.60 , pp. 67-77
    • Herrnstadt, C.1    Clevenger, W.2    Ghosh, S.S.3    Anderson, C.4    Fahy, E.5
  • 15
    • 0033251460 scopus 로고    scopus 로고
    • Nuclear pseudogenes of mitochondrial DNA as a variable part of the human genome
    • Yuan JD, Shi JX, Meng GX, An LG, Hu GX (1999) Nuclear pseudogenes of mitochondrial DNA as a variable part of the human genome. Cell Res 9: 281-290.
    • (1999) Cell Res , vol.9 , pp. 281-290
    • Yuan, J.D.1    Shi, J.X.2    Meng, G.X.3    An, L.G.4    Hu, G.X.5
  • 16
    • 0000387373 scopus 로고    scopus 로고
    • Nuclear integrations: Challenges for mitochondrial DNA markers
    • Zhang DX, Hewitt GM (1996) Nuclear integrations: Challenges for mitochondrial DNA markers. Trends Ecol Evol 11: 247-251.
    • (1996) Trends Ecol Evol , vol.11 , pp. 247-251
    • Zhang, D.X.1    Hewitt, G.M.2
  • 17
    • 0037309706 scopus 로고    scopus 로고
    • Evolutionary dynamics of large numts in the human genome: Rarity of independent insertions and abundance of post-insertion duplications
    • Hazkani-Covo E, Sorek R, Graur D (2003) Evolutionary dynamics of large numts in the human genome: Rarity of independent insertions and abundance of post-insertion duplications. J Mol Evol 56: 169-174.
    • (2003) J Mol Evol , vol.56 , pp. 169-174
    • Hazkani-Covo, E.1    Sorek, R.2    Graur, D.3
  • 18
    • 0036073133 scopus 로고    scopus 로고
    • Pattern of organization of human mitochondrial pseudogenes in the nuclear genome
    • Woischnik M, Moraes CT (2002) Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res 12: 885-893.
    • (2002) Genome Res , vol.12 , pp. 885-893
    • Woischnik, M.1    Moraes, C.T.2
  • 20
    • 0036544631 scopus 로고    scopus 로고
    • Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus
    • Manfredi G, Fu J, Ojaimi J, Sadlock JE, Kwong JQ, et al. (2002) Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus. Nat Genet 30: 394-399.
    • (2002) Nat Genet , vol.30 , pp. 394-399
    • Manfredi, G.1    Fu, J.2    Ojaimi, J.3    Sadlock, J.E.4    Kwong, J.Q.5
  • 21
    • 33845907665 scopus 로고    scopus 로고
    • Hazkani-Covo E, D. G (2007) A cComparative analysis of numt evolution in human and chimpanzee. Mol Biol Evol 24: 13-18.
    • Hazkani-Covo E, D. G (2007) A cComparative analysis of numt evolution in human and chimpanzee. Mol Biol Evol 24: 13-18.
  • 22
    • 0034237205 scopus 로고    scopus 로고
    • Organellar genes: Why do they end up in the nucleus?
    • Blanchard JL, Lynch M (2000) Organellar genes: Why do they end up in the nucleus? Trends Genet 16: 315-320.
    • (2000) Trends Genet , vol.16 , pp. 315-320
    • Blanchard, J.L.1    Lynch, M.2
  • 23
    • 0034882969 scopus 로고    scopus 로고
    • The human genome project reveals a continuous transfer of large mitochondrial fragments to the nucleus
    • Mourier T, Hansen AJ, Willerslev E, Arctander P (2001) The human genome project reveals a continuous transfer of large mitochondrial fragments to the nucleus. Mol Biol Evol 18: 1833-1837.
    • (2001) Mol Biol Evol , vol.18 , pp. 1833-1837
    • Mourier, T.1    Hansen, A.J.2    Willerslev, E.3    Arctander, P.4
  • 24
    • 0028363062 scopus 로고
    • Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat
    • Lopez JV, Yuhki N, Masuda R, Modi W, O'Brien SJ (1994) Numt, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat. J Mol Biol 39: 174-190.
    • (1994) J Mol Biol , vol.39 , pp. 174-190
    • Lopez, J.V.1    Yuhki, N.2    Masuda, R.3    Modi, W.4    O'Brien, S.J.5
  • 25
    • 0026091126 scopus 로고
    • RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution
    • Nugent JM, Palmer JD (1991) RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution. Cell 66: 473-481.
    • (1991) Cell , vol.66 , pp. 473-481
    • Nugent, J.M.1    Palmer, J.D.2
  • 26
    • 0036296922 scopus 로고    scopus 로고
    • Structure and chromosomal distribution of human mitochondrial pseudogenes
    • Tourmen Y, Baris O, Dessen P, Jacques C, Malthiery Y, et al. (2002) Structure and chromosomal distribution of human mitochondrial pseudogenes. Genomics 80: 71-77.
    • (2002) Genomics , vol.80 , pp. 71-77
    • Tourmen, Y.1    Baris, O.2    Dessen, P.3    Jacques, C.4    Malthiery, Y.5
  • 28
    • 19344368527 scopus 로고    scopus 로고
    • Continued colonization of the human genome by mitochondrial DNA
    • Ricchetti M, Tekaia F, Dujon B (2004) Continued colonization of the human genome by mitochondrial DNA. PLOS Biol 2: e273.
    • (2004) PLOS Biol , vol.2
    • Ricchetti, M.1    Tekaia, F.2    Dujon, B.3
  • 29
    • 0037359926 scopus 로고    scopus 로고
    • Human genetic disease caused by de novo mitochondrial-nuclear DNA transfer
    • Turner C, Killoran C, Thomas NS, Rosenberg M, Chuzhanova NA, et al. (2003) Human genetic disease caused by de novo mitochondrial-nuclear DNA transfer. Hum Genet 112: 303-309.
    • (2003) Hum Genet , vol.112 , pp. 303-309
    • Turner, C.1    Killoran, C.2    Thomas, N.S.3    Rosenberg, M.4    Chuzhanova, N.A.5
  • 30
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the tree of life
    • Benton MJ, Donoghue PC (2007) Paleontological evidence to date the tree of life. Mol Biol Evol 24: 26-53.
    • (2007) Mol Biol Evol , vol.24 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.2
  • 31
    • 0033735946 scopus 로고    scopus 로고
    • Estimating divergence times in the presence of an overdispersed molecular clock
    • Cutler DJ (2000) Estimating divergence times in the presence of an overdispersed molecular clock. Mol Biol Evol 17: 1647-1660.
    • (2000) Mol Biol Evol , vol.17 , pp. 1647-1660
    • Cutler, D.J.1
  • 32
    • 0028340205 scopus 로고
    • Evidence that most Alu sequences were inserted in a process that ceased about 30 million years ago
    • Britten RJ (1994) Evidence that most Alu sequences were inserted in a process that ceased about 30 million years ago. Proc Natl Acad Sci U S A 91: 6148-6150.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 6148-6150
    • Britten, R.J.1
  • 33
    • 1542682570 scopus 로고    scopus 로고
    • Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular LI subfamilies in ancestral primates
    • Ohshima K, Hattori M, Yada T, Gojobori T, Sakaki Y, et al. (2003) Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular LI subfamilies in ancestral primates. Genome Biol 4: R74.
    • (2003) Genome Biol , vol.4
    • Ohshima, K.1    Hattori, M.2    Yada, T.3    Gojobori, T.4    Sakaki, Y.5
  • 34
    • 0024836563 scopus 로고
    • The population genetics of Drosophila transposable elements
    • Charlesworth B, Langley CH (1989) The population genetics of Drosophila transposable elements. Annu Rev Genet 23: 251-287.
    • (1989) Annu Rev Genet , vol.23 , pp. 251-287
    • Charlesworth, B.1    Langley, C.H.2
  • 35
    • 0033288823 scopus 로고    scopus 로고
    • Sure facts, speculations, and open questions about the evolution of transposable element copy number
    • Nuzhdin SV (1999) Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107: 129-137.
    • (1999) Genetica , vol.107 , pp. 129-137
    • Nuzhdin, S.V.1
  • 36
    • 84871459062 scopus 로고    scopus 로고
    • Mammalian responses to climate change at the Paleocene-Eocene boundary: Polecat Bench record in the northern Bighorn Basin, Wyoming
    • Gingerich PD (2003) Mammalian responses to climate change at the Paleocene-Eocene boundary: Polecat Bench record in the northern Bighorn Basin, Wyoming. Geol Soc Amer 369: 463-478.
    • (2003) Geol Soc Amer , vol.369 , pp. 463-478
    • Gingerich, P.D.1
  • 37
    • 0034612238 scopus 로고    scopus 로고
    • Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis
    • Bailey JA, Carrel L, Chakravarti A, Eichler EE (2000) Molecular evidence for a relationship between LINE-1 elements and X chromosome inactivation: The Lyon repeat hypothesis. Proc Natl Acad Sci U S A 97: 6634-6639.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6634-6639
    • Bailey, J.A.1    Carrel, L.2    Chakravarti, A.3    Eichler, E.E.4
  • 38
    • 4644324088 scopus 로고    scopus 로고
    • Widespread RNA editing of embedded alu elements in the human transcriptome
    • Kim DD, Kim TT, Walsh T, Kobayashi Y, Matise TC, et al. (2004) Widespread RNA editing of embedded alu elements in the human transcriptome. Genome Res 14: 1719-1725.
    • (2004) Genome Res , vol.14 , pp. 1719-1725
    • Kim, D.D.1    Kim, T.T.2    Walsh, T.3    Kobayashi, Y.4    Matise, T.C.5
  • 39
    • 0028334711 scopus 로고
    • Complete mitochondrial genome amplification
    • Cheng S, Higuchi R, Stoneking M (1994) Complete mitochondrial genome amplification. Nat Genet 7: 350-351.
    • (1994) Nat Genet , vol.7 , pp. 350-351
    • Cheng, S.1    Higuchi, R.2    Stoneking, M.3
  • 40
    • 0029922167 scopus 로고    scopus 로고
    • Isolation of human cell lines lacking mitochondrial DNA
    • King MP, Attardi G (1996) Isolation of human cell lines lacking mitochondrial DNA. Methods Enzymol 264: 304-313.
    • (1996) Methods Enzymol , vol.264 , pp. 304-313
    • King, M.P.1    Attardi, G.2
  • 41
    • 0031004203 scopus 로고    scopus 로고
    • Diagnosis of CMT1A duplications and HNPP deletions by interphase FISH: Implications for testing in the cytogenetics laboratory
    • Shaffer LG, Kennedy GM, Spikes AS, Lupski JR (1997) Diagnosis of CMT1A duplications and HNPP deletions by interphase FISH: Implications for testing in the cytogenetics laboratory. Am J Med Genet 69: 325-331.
    • (1997) Am J Med Genet , vol.69 , pp. 325-331
    • Shaffer, L.G.1    Kennedy, G.M.2    Spikes, A.S.3    Lupski, J.R.4
  • 42
    • 0029791627 scopus 로고    scopus 로고
    • The gene encoding the p60 subunit of chromatin assembly factor I (CAF1P60) maps to human chromosome 21q22.2, a region associated with some of the major features of Down syndrome
    • Katsanis N, Fisher EMC (1996) The gene encoding the p60 subunit of chromatin assembly factor I (CAF1P60) maps to human chromosome 21q22.2, a region associated with some of the major features of Down syndrome. Hum Genet 98: 497-499.
    • (1996) Hum Genet , vol.98 , pp. 497-499
    • Katsanis, N.1    Fisher, E.M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.