Pathway classification of TCA cycle

IEE Proceedings: Systems Biology

Volumn 153, Issue 5, 2006, Pages 369-371

  Peres S ^a   Beurton Aimar, M ^b   Mazat, J P ^a  

^a INSERM   (France)

^b UNIVERSITÉ BORDEAUX 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AGGLOMERATION; BIOCHEMISTRY; CARBOXYLIC ACIDS; METABOLITES; STRUCTURE (COMPOSITION);

METABOLIC NETWORKS; METABOLITE CARRIERS; TRICARBOXYLIC ACID CYCLE;

METABOLISM;

5,10 METHYLENETETRAHYDROFOLATE REDUCTASE (FADH2); ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATE; ASPARTATE AMINOTRANSFERASE; CARBON DIOXIDE; FLAVINE ADENINE NUCLEOTIDE; GLUTAMATE DEHYDROGENASE; GLUTAMIC ACID; PYRUVATE CARBOXYLASE; PYRUVATE DEHYDROGENASE; PYRUVIC ACID; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; TRICARBOXYLIC ACID;

ARTICLE; BIOCHEMISTRY; CHEMICAL REACTION; CITRIC ACID CYCLE; CLASSIFICATION; COMPUTER PROGRAM; CONTROLLED STUDY; METABOLITE; PROCESS MODEL; PROTEIN MOTIF; STRUCTURE ANALYSIS; TRANSPORT KINETICS;

ADAPTATION, PHYSIOLOGICAL; ALGORITHMS; ANIMALS; CELL PHYSIOLOGY; CITRIC ACID CYCLE; COMPUTER SIMULATION; FEEDBACK; HOMEOSTASIS; HUMANS; KINETICS; MODELS, BIOLOGICAL; PROTEOME; SIGNAL TRANSDUCTION;

EID: 33747184572     PISSN: 17412471     EISSN: None     Source Type: Journal    
DOI: 10.1049/ip-syb:20060013     Document Type: Article

References (10)

1. Stelling, J., Klamt, S., Bettenbrock, K., Schuster, S., and Gilles, E.D.: 'Metabolic network structure determines key aspect of functionality and regulation', Nature, 2002, 420, p. 190-193 0028-0836
2. Papin, J.A., Price, N.D., Edwards, J.S., and Palsson, B.O.: 'The genome-scale metabolic extreme pathway structure in haemophilus influenzae shows significant network redundancy', J. Theor. Biol., 2002, 215, p. 67-82
3. Schuster, S., Dandekar, T., and Fell, D.A.: 'Detection of elementary modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering', Trends Biotechnol., 1999, 17, p. 53-60
4. Klamt, S., and Gilles, E.D.: 'Minimal cut sets in biochemical reaction networks', Bioinformatics, 2004, 20, p. 226-234
5. Rustin, P., Bourgeron, T., Parfait, B., Chretien, D., Munnich, A., and Rotig, A.: 'Inborn errors of Ahe Krebs cycle: a group of unusual mitochondrial diseases in human', Biochim. Biophys. Acta, 1997, 1361, p. 185-197
6. Schuster, S., and Hilgetag, C.: 'On elementary flux modes in biochemical reaction systems at steady state', J. Biol. Syst., 1994, 2, (2), p. 165-182
7. Schuster, S., Dandekar, T., and Fell, D.A.: 'Description of the algorithm for computing elementary flux modes', Available at http://pinguin.biologie.unijena.de/bioinformatik/networks/metatool/ algorithm.pdf
8. Pfeiffer, T., Sanchez-Valdenebro, I., Nuno, J.C., Montero, F., and SchusFer, S.: 'Metatool: for studying metabolic networks', Bioinformatics, 1999, 15, (3), p. 251-257
9. Theodoridis, S., and Koutroumbas, K.: 'Pattern recognition', (Academic Press 1999)
10. Pérès, S.: 'Analyse structurelle des réseaux métaboliques: Application au métabolisme énergétique mitochondrial', 2005, PhD, Université Bordeaux 2