메뉴 건너뛰기




Volumn 3, Issue 3, 2003, Pages 347-365

Quantitative Petri net model of gene regulated metabolic networks in the cell

Author keywords

Gene regulation; Metabolic network; Modeling and simulation; Petri nets; Quantitative model; Urea cycle

Indexed keywords

ARGININE; ARGININOSUCCINIC ACID; ASPARTIC ACID; CARBAMOYL PHOSPHATE; CITRULLINE; DNA; ENZYME; MESSENGER RNA; NITROGEN; ORNITHINE; PROTEIN; RIBOSOME PROTEIN; RNA; RNA POLYMERASE; UREA;

EID: 0345170901     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (74)

References (28)
  • 1
    • 0037252704 scopus 로고    scopus 로고
    • The molecular biology database collection: 2003 update
    • Baxevanis, D. A. (2003). The molecular biology database collection: 2003 update. Nucleic Acids Res. 31, 1-12.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1-12
    • Baxevanis, D.A.1
  • 3
    • 0345653653 scopus 로고    scopus 로고
    • Modelling and simulation of metabolic networks: Petri nets approach and perspective
    • Amorski K. et al. (eds.), Darmstadt
    • Chen, M. (2002). Modelling and simulation of metabolic networks: Petri nets approach and perspective. In: Modelling and Simulation 2002: Proceedings of ESM Amorski K. et al. (eds.), Darmstadt. pp. 441-444.
    • (2002) Modelling and Simulation 2002: Proceedings of ESM , pp. 441-444
    • Chen, M.1
  • 8
    • 0032605507 scopus 로고    scopus 로고
    • Analysis of the stabilizing effect of Rom on the genetic network controlling ColE1 plasmid replication
    • Goss, P. J. E. and Peccoud, J. (1999). Analysis of the stabilizing effect of Rom on the genetic network controlling ColE1 plasmid replication. Pac. Symp. Biocomput. 4, 65-76.
    • (1999) Pac. Symp. Biocomput. , vol.4 , pp. 65-76
    • Goss, P.J.E.1    Peccoud, J.2
  • 9
    • 0029870836 scopus 로고    scopus 로고
    • Protein degradation or regulation: Ub the judge
    • Hochstrasser, M. (1996). Protein degradation or regulation: Ub the judge. Cell 84, 813-815.
    • (1996) Cell , vol.84 , pp. 813-815
    • Hochstrasser, M.1
  • 10
    • 0032229446 scopus 로고    scopus 로고
    • Quantitative modeling of biochemical networks
    • Hofestaedt, R. and Thelen, S. (1998). Quantitative modeling of biochemical networks. In Silico Biol. 1, 39-53.
    • (1998) Silico Biol. , vol.1 , pp. 39-53
    • Hofestaedt, R.1    Thelen, S.2
  • 12
    • 0034576198 scopus 로고    scopus 로고
    • Knowledge acquisition, management and representation for the diagnostic support in human inborn errors of metabolism
    • Hasman, A. et al. (eds.) Amsterdam, IOS Press
    • Hofestaedt, R, Mischke, U. and Scholz, U. (2000b). Knowledge acquisition, management and representation for the diagnostic support in human inborn errors of metabolism. In: Medical Infobahn for Europe: Proceedings of MIE2000 and GMDS2000, Hasman, A. et al. (eds.) Amsterdam, IOS Press, pp. 857-862.
    • (2000) Medical Infobahn for Europe: Proceedings of MIE2000 and GMDS2000 , pp. 857-862
    • Hofestaedt, R.1    Mischke, U.2    Scholz, U.3
  • 13
    • 0038745251 scopus 로고    scopus 로고
    • Systems Biology Markup Language (SBML) Level 1: Structures and facilities for basic model definitions
    • Hucka, M, Finney, A, Sauro, H. and Bolouri, H. (2001). Systems Biology Markup Language (SBML) Level 1: Structures and facilities for basic model definitions, pp. 30-33.
    • (2001) , pp. 30-33
    • Hucka, M.1    Finney, A.2    Sauro, H.3    Bolouri, H.4
  • 14
    • 84888065035 scopus 로고    scopus 로고
    • Information system for the support of research, diagnosis and therapy of inborn metabolic diseases
    • V. Patel et al. (eds), Amsterdam: IOS Press
    • Kauert, R, Toepel, T, Scholz, U. and Hofestaedt, R. (2001). Information system for the support of research, diagnosis and therapy of inborn metabolic diseases. In: MEDINFO 2001, V. Patel et al. (eds), Amsterdam: IOS Press, pp. 353-356.
    • (2001) MEDINFO 2001 , pp. 353-356
    • Kauert, R.1    Toepel, T.2    Scholz, U.3    Hofestaedt, R.4
  • 15
    • 0020674681 scopus 로고
    • A graph-theoretical analysis of metabolic regulation
    • Kohn, M. and Letzkus, W. (1983). A graph-theoretical analysis of metabolic regulation. J. Theor. Biol. 100, 293-304.
    • (1983) J. Theor. Biol. , vol.100 , pp. 293-304
    • Kohn, M.1    Letzkus, W.2
  • 16
    • 0003871155 scopus 로고    scopus 로고
    • Coloured Petri nets - Basic concepts, analysis methods and practical use
    • Berlin: Springer-Verlag
    • Kurt, J. (1997). Coloured Petri nets - Basic concepts, analysis methods and practical use, In: EATCS Monographs on Theoretical Computer Science. 2nd Edition, Berlin: Springer-Verlag
    • (1997) EATCS Monographs on Theoretical Computer Science. 2nd Edition
    • Kurt, J.1
  • 17
    • 0031780887 scopus 로고    scopus 로고
    • Competitive calcium binding: Implications for dendritic calcium signaling
    • Markram, H., Roth, A. and Helmchen, F. (1998). Competitive calcium binding: Implications for dendritic calcium signaling. J. Comput. Neurosci. 5, 331-348.
    • (1998) J. Comput. Neurosci. , vol.5 , pp. 331-348
    • Markram, H.1    Roth, A.2    Helmchen, F.3
  • 18
    • 0033648431 scopus 로고    scopus 로고
    • Hybrid Petri net representation of gene regulatory network
    • Matsuno, H., Doi, A., Nagasaki, M. and Miyano, S. (2000). Hybrid Petri net representation of gene regulatory network. Pac. Symp. Biocomput. 5, 338-349.
    • (2000) Pac. Symp. Biocomput. , vol.5 , pp. 338-349
    • Matsuno, H.1    Doi, A.2    Nagasaki, M.3    Miyano, S.4
  • 19
    • 0344790938 scopus 로고    scopus 로고
    • Genomic object net: Basic architecture for representing and simulating biopathways
    • April 2001.
    • Matsuno, H., Doi, A., Drath, R. and Miyano, S. (2001). Genomic object net: Basic architecture for representing and simulating biopathways. In: RECOMB 2001, April 2001.
    • (2001) RECOMB 2001
    • Matsuno, H.1    Doi, A.2    Drath, R.3    Miyano, S.4
  • 20
    • 0030611092 scopus 로고    scopus 로고
    • Linearized buffered Ca2+ diffusion in microdomains and its implications for calculation of [Ca2+] at the mouth of a calcium channel
    • Naraghi, M. and Neher, E. (1997). Linearized buffered Ca2+ diffusion in microdomains and its implications for calculation of [Ca2+] at the mouth of a calcium channel. J. Neurosci. 17, 6961-6973.
    • (1997) J. Neurosci. , vol.17 , pp. 6961-6973
    • Naraghi, M.1    Neher, E.2
  • 21
    • 0019127301 scopus 로고
    • Human carbamylphosphate synthetase I. Stabilization, purification, and partial characterization of the enzyme from human liver
    • Pierson, D, L. and Brien, J. M. (1980). Human carbamylphosphate synthetase I. Stabilization, purification, and partial characterization of the enzyme from human liver. J. Biol. Chem. 255, 7891-7895.
    • (1980) J. Biol. Chem. , vol.255 , pp. 7891-7895
    • Pierson, D.L.1    Brien, J.M.2
  • 22
    • 0029969227 scopus 로고    scopus 로고
    • Relief of ornithine decarboxylase messenger RNA translational repression induced by alternative splicing of its 5′ untranslated region
    • Pyronnet, S., Vagner, S., Bouisson, M., Prats, A. C., Vaysse, N. and Pradayrol, L. (1996). Relief of ornithine decarboxylase messenger RNA translational repression induced by alternative splicing of its 5′ untranslated region. Cancer Res. 56, 1742-1745.
    • (1996) Cancer Res. , vol.56 , pp. 1742-1745
    • Pyronnet, S.1    Vagner, S.2    Bouisson, M.3    Prats, A.C.4    Vaysse, N.5    Pradayrol, L.6
  • 27
    • 0027234954 scopus 로고
    • Autocatalytic cooperativity and self-regulation of ATPase pumps in membrane active transport
    • Weissmuller, G. and Bisch, P. M. (1993). Autocatalytic cooperativity and self-regulation of ATPase pumps in membrane active transport. Eur. Biophys. J. 22, 63-70.
    • (1993) Eur. Biophys. J. , vol.22 , pp. 63-70
    • Weissmuller, G.1    Bisch, P.M.2
  • 28
    • 0029986782 scopus 로고    scopus 로고
    • Alternative splicing and differential expression of DT-diaphorase transcripts in human colon tumors and in peripheral mononuclear cells in response to mitomycin C treatment
    • Yao, K. S., Godwin, A. K., Johnson, C. and O'Dwyer, P. J. (1996). Alternative splicing and differential expression of DT-diaphorase transcripts in human colon tumors and in peripheral mononuclear cells in response to mitomycin C treatment. Cancer Res. 56, 1731-1736.
    • (1996) Cancer Res. , vol.56 , pp. 1731-1736
    • Yao, K.S.1    Godwin, A.K.2    Johnson, C.3    O'Dwyer, P.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.