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Volumn 79, Issue 12, 2003, Pages 703-716

An Approach for Dividing Models of Biological Reaction Networks into Functional Units

Author keywords

Biochemical reaction networks; Cluster analysis; Functional units; Systems analysis; Systems biology

Indexed keywords

ALGORITHMS; BIOCHEMISTRY; BRAIN; CELLS; COMPUTATIONAL METHODS; DIFFERENTIAL EQUATIONS; ENZYMES; ESCHERICHIA COLI; MATHEMATICAL MODELS; METABOLITES; SYSTEMS ANALYSIS;

EID: 1342265605     PISSN: 00375497     EISSN: None     Source Type: Journal    
DOI: 10.1177/0037549703040940     Document Type: Article
Times cited : (16)

References (38)
  • 2
    • 0031933027 scopus 로고    scopus 로고
    • Mathematical modeling and analysis in biochemical engineering: Past accomplishments and future opportunities
    • Bailey, J. E. 1998. Mathematical modeling and analysis in biochemical engineering: Past accomplishments and future opportunities. Biotechnology Progress 14:8-20.
    • (1998) Biotechnology Progress , vol.14 , pp. 8-20
    • Bailey, J.E.1
  • 4
    • 0033716382 scopus 로고    scopus 로고
    • Perspectives on systems biology
    • Kitano, H. 2000. Perspectives on systems biology. New Generation Computing 18 (3): 199-216.
    • (2000) New Generation Computing , vol.18 , Issue.3 , pp. 199-216
    • Kitano, H.1
  • 6
    • 0024961761 scopus 로고
    • A mathematical model for the growth of a single cell of E. coli on a glucose/glutamine/ammonium medium
    • Shu, J., and M. L. Shuler. 1989. A mathematical model for the growth of a single cell of E. coli on a glucose/glutamine/ammonium medium. Biotechnology Bioengineering 33:1117-26.
    • (1989) Biotechnology Bioengineering , vol.33 , pp. 1117-1126
    • Shu, J.1    Shuler, M.L.2
  • 13
    • 68749091258 scopus 로고    scopus 로고
    • Robustness in biological systems: A provisional taxonomy
    • edited by T. S. Deisboeck, J. Y. Kresh, and T. B. Kepler. New York: Kluwer
    • Krakauer, D. C. 2003. Robustness in biological systems: A provisional taxonomy. In Complex systems science in biomedicine, edited by T. S. Deisboeck, J. Y. Kresh, and T. B. Kepler. New York: Kluwer.
    • (2003) Complex Systems Science in Biomedicine
    • Krakauer, D.C.1
  • 14
    • 0033787566 scopus 로고    scopus 로고
    • Metabolic networks: A signal-oriented approach to cellular models
    • Lengeler, J. 2000. Metabolic networks: A signal-oriented approach to cellular models. Biological Chemistry 381:911-20.
    • (2000) Biological Chemistry , vol.381 , pp. 911-920
    • Lengeler, J.1
  • 16
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • Ravasz, E., A. L. Somera, D. A. Mongru, Z. N. Oltvai, and A.-L. Barabasi. 2002. Hierarchical organization of modularity in metabolic networks. Science 297:1551-5.
    • (2002) Science , vol.297 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4    Barabasi, A.-L.5
  • 17
    • 0037417817 scopus 로고    scopus 로고
    • Modular organization of cellular networks
    • Rives, A. W., and T. Galitski. 2003. Modular organization of cellular networks. PNAS 100 (3): 1128-33.
    • (2003) PNAS , vol.100 , Issue.3 , pp. 1128-1133
    • Rives, A.W.1    Galitski, T.2
  • 18
    • 0035206064 scopus 로고    scopus 로고
    • The organization of metabolic reaction networks: III. Application for diauxic growth on glucose and lactose
    • Kremling, A., K. Bettenbrock, B. Laube, J. W. Lengeler, and E. D. Gilles. 2001. The organization of metabolic reaction networks: III. Application for diauxic growth on glucose and lactose. Metabolic Engineering 3 (4): 362-79.
    • (2001) Metabolic Engineering , vol.3 , Issue.4 , pp. 362-379
    • Kremling, A.1    Bettenbrock, K.2    Laube, B.3    Lengeler, J.W.4    Gilles, E.D.5
  • 19
    • 0034805944 scopus 로고    scopus 로고
    • The organization of metabolic reaction networks: II. Signal processing in hierarchical structured functional units
    • Kremling, A., and E. D. Gilles. 2001. The organization of metabolic reaction networks: II. Signal processing in hierarchical structured functional units. Metabolic Engineering 3 (2): 138-50.
    • (2001) Metabolic Engineering , vol.3 , Issue.2 , pp. 138-150
    • Kremling, A.1    Gilles, E.D.2
  • 20
    • 0033662287 scopus 로고    scopus 로고
    • The organization of metabolic reaction networks: A signal-oriented approach to cellular models
    • Kremling, A., K. Jahreis, J. W. Lengeler, and E. D. Gilles. 2000. The organization of metabolic reaction networks: A signal-oriented approach to cellular models. Metabolic Engineering 2 (3): 190-200.
    • (2000) Metabolic Engineering , vol.2 , Issue.3 , pp. 190-200
    • Kremling, A.1    Jahreis, K.2    Lengeler, J.W.3    Gilles, E.D.4
  • 21
    • 0035909791 scopus 로고    scopus 로고
    • Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification
    • Wang, J., E. D. Gilles, J. W. Lengeler, and K. Jahreis. 2001. Modeling of inducer exclusion and catabolite repression based on a PTS-dependent sucrose and non-PTS-dependent glycerol transport systems in Escherichia coli K-12 and its experimental verification. Journal of Biotechnology 92:133-58.
    • (2001) Journal of Biotechnology , vol.92 , pp. 133-158
    • Wang, J.1    Gilles, E.D.2    Lengeler, J.W.3    Jahreis, K.4
  • 23
    • 0034615791 scopus 로고    scopus 로고
    • Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
    • Schilling, C. H., D. Letscher, and B. O. Palsson. 2000. Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. Journal of Theoretical Biology 203:229-48.
    • (2000) Journal of Theoretical Biology , vol.203 , pp. 229-248
    • Schilling, C.H.1    Letscher, D.2    Palsson, B.O.3
  • 25
    • 0029002581 scopus 로고
    • Composite control of cell function: Metabolic pathways behaving as single control units
    • Kholodenko, B. N., S. Schuster, J. M. Rohwer, M. Cascante, and H. V. Westerhoff. 1995. Composite control of cell function: Metabolic pathways behaving as single control units. FEBS 368:1-4.
    • (1995) FEBS , vol.368 , pp. 1-4
    • Kholodenko, B.N.1    Schuster, S.2    Rohwer, J.M.3    Cascante, M.4    Westerhoff, H.V.5
  • 27
    • 0034910345 scopus 로고    scopus 로고
    • Navigating gene expression using microarrays - A technology review
    • Schulze, A., and J. Downward. 2001. Navigating gene expression using microarrays - a technology review. Nature Cell Biology 3 (8): E190-5.
    • (2001) Nature Cell Biology , vol.3 , Issue.8
    • Schulze, A.1    Downward, J.2
  • 30
    • 0036721753 scopus 로고    scopus 로고
    • 2 model reduction and variance reduction
    • 2 model reduction and variance reduction. Automatica 38 (9): 1517-30.
    • (2002) Automatica , vol.38 , Issue.9 , pp. 1517-1530
    • Tjärnström, F.1    Ljung, L.2
  • 31
    • 0030936038 scopus 로고    scopus 로고
    • Extracellular melibiose and fructose are intermediates in raffinose catabolism during fermentation to ethanol by engineered enteric bacteria
    • Moniruzzaman, M., X. Lai, S. W. York, and L. O. Ingram. 1997. Extracellular melibiose and fructose are intermediates in raffinose catabolism during fermentation to ethanol by engineered enteric bacteria. Journal of Bacteriology 179 (6): 1880-6.
    • (1997) Journal of Bacteriology , vol.179 , Issue.6 , pp. 1880-1886
    • Moniruzzaman, M.1    Lai, X.2    York, S.W.3    Ingram, L.O.4
  • 33
    • 1342294716 scopus 로고    scopus 로고
    • An overview of reconstructability analysis
    • in press
    • Zwick, M. 2004. An overview of reconstructability analysis. Kybernetes, in press.
    • (2004) Kybernetes
    • Zwick, M.1
  • 37
    • 0036212767 scopus 로고    scopus 로고
    • Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors
    • Schoeberl, B., C. Eichler-Jonsson, E. D. Gilles, and G. Müller. 2002. Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors. Nature Biotechnology 20:370-75.
    • (2002) Nature Biotechnology , vol.20 , pp. 370-375
    • Schoeberl, B.1    Eichler-Jonsson, C.2    Gilles, E.D.3    Müller, G.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.