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Volumn 9, Issue 1, 2008, Pages

Simultaneous targeted exchange of two nucleotides by single-stranded oligonucleotides clusters within a region of about fourteen nucleotides

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDE; PHOSPHOROTHIOIC ACID; SINGLE STRANDED OLIGONUCLEOTIDE; UNCLASSIFIED DRUG; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; OLIGODEOXYRIBONUCLEOTIDE; PRIMER DNA; SINGLE STRANDED DNA;

EID: 41449118357     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-9-14     Document Type: Article
Times cited : (7)

References (45)
  • 1
    • 0036460362 scopus 로고    scopus 로고
    • Mechanisms underlying targeted gene correction using chimeric RNA/ DNA and single-stranded DNA oligonucleotides
    • Andersen MS, Sorensen CB, Bolund L, Jensen TG: Mechanisms underlying targeted gene correction using chimeric RNA/ DNA and single-stranded DNA oligonucleotides. J Mol Med 2002, 80:770-781.
    • (2002) J Mol Med , vol.80 , pp. 770-781
    • Andersen, M.S.1    Sorensen, C.B.2    Bolund, L.3    Jensen, T.G.4
  • 3
    • 0042881052 scopus 로고    scopus 로고
    • The development and regulation of gene repair
    • Liu L, Parekh-Olmedo H, Kmiec EB: The development and regulation of gene repair. Nat Rev Genet 2003, 4:679-689.
    • (2003) Nat Rev Genet , vol.4 , pp. 679-689
    • Liu, L.1    Parekh-Olmedo, H.2    Kmiec, E.B.3
  • 4
    • 0032921514 scopus 로고    scopus 로고
    • Targeted gene repair
    • Kmiec EB: Targeted gene repair. Gene Ther 1999, 6:1-3.
    • (1999) Gene Ther , vol.6 , pp. 1-3
    • Kmiec, E.B.1
  • 5
    • 12444317592 scopus 로고    scopus 로고
    • Mechanism of gene repair open for discussion
    • Igoucheva O, Alexeev V, Yoon K: Mechanism of gene repair open for discussion. Oligonucleotides 2004, 14:311-321.
    • (2004) Oligonucleotides , vol.14 , pp. 311-321
    • Igoucheva, O.1    Alexeev, V.2    Yoon, K.3
  • 6
    • 29744459683 scopus 로고    scopus 로고
    • Genomic sequence correction by single-stranded DNA oligonucleotides: Role of DNA synthesis and chemical modifications of the oligonucleotide ends
    • Olsen PA, Randol M, Luna L, Brown T, Krauss S: Genomic sequence correction by single-stranded DNA oligonucleotides: Role of DNA synthesis and chemical modifications of the oligonucleotide ends. J Gene Med 2005, 7:1534-1544.
    • (2005) J Gene Med , vol.7 , pp. 1534-1544
    • Olsen, P.A.1    Randol, M.2    Luna, L.3    Brown, T.4    Krauss, S.5
  • 7
  • 8
    • 33750969980 scopus 로고    scopus 로고
    • Targeted Chromosomal Gene Modification in Human Cells by Single-Stranded Oligodeoxynucleotides in the Presence of a DNA Double-Strand Break
    • Radecke F, Peter I, Radecke S, Gellhaus K, Schwarz K, Cathomen T: Targeted Chromosomal Gene Modification in Human Cells by Single-Stranded Oligodeoxynucleotides in the Presence of a DNA Double-Strand Break. Mol Ther 2006.
    • (2006) Mol Ther
    • Radecke, F.1    Peter, I.2    Radecke, S.3    Gellhaus, K.4    Schwarz, K.5    Cathomen, T.6
  • 9
    • 3242730327 scopus 로고    scopus 로고
    • Oligonucleotide-directed mutagenesis and targeted gene correction: A mechanistic point of view
    • Igoucheva O, Alexeev V, Yoon K: Oligonucleotide-directed mutagenesis and targeted gene correction: A mechanistic point of view. Curr Mol Med 2004, 4:445-463.
    • (2004) Curr Mol Med , vol.4 , pp. 445-463
    • Igoucheva, O.1    Alexeev, V.2    Yoon, K.3
  • 10
    • 33845608839 scopus 로고    scopus 로고
    • Active transcription promotes single-stranded oligonucleotide mediated gene repair
    • Huen MS, Lu LY, Liu DP, Huang JD: Active transcription promotes single-stranded oligonucleotide mediated gene repair. Biochem Biophys Res Commun 2007, 353:33-39.
    • (2007) Biochem Biophys Res Commun , vol.353 , pp. 33-39
    • Huen, M.S.1    Lu, L.Y.2    Liu, D.P.3    Huang, J.D.4
  • 11
    • 33746866350 scopus 로고    scopus 로고
    • Targeted gene repair: The ups and downs of a promising gene therapy approach
    • de Semir D, Aran JM: Targeted gene repair: The ups and downs of a promising gene therapy approach. Curr Gene Ther 2006, 6:481-504.
    • (2006) Curr Gene Ther , vol.6 , pp. 481-504
    • De Semir, D.1    Aran, J.M.2
  • 12
    • 36949003720 scopus 로고    scopus 로고
    • Progress and Prospects: Targeted gene alteration (TGA)
    • Parekh-Olmedo H, Kmiec EB: Progress and Prospects: Targeted gene alteration (TGA). Gene Ther 2007.
    • (2007) Gene Ther
    • Parekh-Olmedo, H.1    Kmiec, E.B.2
  • 13
    • 0036640365 scopus 로고    scopus 로고
    • Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors
    • Liu L, Cheng S, van Brabant AJ, Kmiec EB: Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors. Nucleic Acids Res 2002, 30:2742-2750.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2742-2750
    • Liu, L.1    Cheng, S.2    Van Brabant, A.J.3    Kmiec, E.B.4
  • 14
    • 0036696071 scopus 로고    scopus 로고
    • Nuclear extracts promote gene correction and strand pairing of oligonucleotides to the homologous plasmid
    • Igoucheva O, Alexeev V, Yoon K: Nuclear extracts promote gene correction and strand pairing of oligonucleotides to the homologous plasmid. Antisense Nucleic Acid Drug Dev 2002, 12:235-246.
    • (2002) Antisense Nucleic Acid Drug Dev , vol.12 , pp. 235-246
    • Igoucheva, O.1    Alexeev, V.2    Yoon, K.3
  • 15
    • 0141613924 scopus 로고    scopus 로고
    • Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter
    • Olsen PA, McKeen C, Krauss S: Branched oligonucleotides induce in vivo gene conversion of a mutated EGFP reporter. Gene Ther 2003, 10:1830-1840.
    • (2003) Gene Ther , vol.10 , pp. 1830-1840
    • Olsen, P.A.1    McKeen, C.2    Krauss, S.3
  • 16
    • 33645800191 scopus 로고    scopus 로고
    • Involvement of ERCC1/XPF and XPG in oligodeoxynucleotide-directed gene modification
    • Igoucheva O, Alexeev V, Scharer O, Yoon K: Involvement of ERCC1/XPF and XPG in oligodeoxynucleotide-directed gene modification. Oligonucleotides 2006, 16:94-104.
    • (2006) Oligonucleotides , vol.16 , pp. 94-104
    • Igoucheva, O.1    Alexeev, V.2    Scharer, O.3    Yoon, K.4
  • 17
    • 33845614522 scopus 로고    scopus 로고
    • The involvement of replication in single stranded oligonucleotide-mediated gene repair
    • Huen MS, Li XT, Lu LY, Watt RM, Liu DP, Huang JD: The involvement of replication in single stranded oligonucleotide-mediated gene repair. Nucleic Acids Res 2006, 34:6183-6194.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6183-6194
    • Huen, M.S.1    Li, X.T.2    Lu, L.Y.3    Watt, R.M.4    Liu, D.P.5    Huang, J.D.6
  • 18
    • 85061600236 scopus 로고    scopus 로고
    • Targeted Chromosomal Gene Modification in Human Cells by Single-Stranded Oligodeoxynucleotides in the Presence of a DNA Double-Strand Break
    • Radecke F, Peter I, Radecke S, Gellhaus K, Schwarz K, Cathomen T: Targeted Chromosomal Gene Modification in Human Cells by Single-Stranded Oligodeoxynucleotides in the Presence of a DNA Double-Strand Break. J Gene Med 2006.
    • (2006) J Gene Med
    • Radecke, F.1    Peter, I.2    Radecke, S.3    Gellhaus, K.4    Schwarz, K.5    Cathomen, T.6
  • 19
    • 33845510688 scopus 로고    scopus 로고
    • Multiple roles for MSH2 in the repair of a deletion mutation directed by modified single-stranded oligonucleotides
    • Maguire KK, Kmiec EB: Multiple roles for MSH2 in the repair of a deletion mutation directed by modified single-stranded oligonucleotides. Gene 2007, 386:107-114.
    • (2007) Gene , vol.386 , pp. 107-114
    • Maguire, K.K.1    Kmiec, E.B.2
  • 20
    • 0036186558 scopus 로고    scopus 로고
    • Gene repair in the new age of gene therapy
    • Richardson PD, Kren BT, Steer CJ: Gene repair in the new age of gene therapy. Hepatology 2002, 35:512-518.
    • (2002) Hepatology , vol.35 , pp. 512-518
    • Richardson, P.D.1    Kren, B.T.2    Steer, C.J.3
  • 21
    • 1542494389 scopus 로고    scopus 로고
    • Low-dose bleomycin induces targeted gene repair frequency in cultured melan-c cells using chimeric RNA/DNA oligonucleotide transfection
    • Suzuki T, Murai A, Muramatsu T: Low-dose bleomycin induces targeted gene repair frequency in cultured melan-c cells using chimeric RNA/DNA oligonucleotide transfection. Int J Mol Med 2003, 12:109-114.
    • (2003) Int J Mol Med , vol.12 , pp. 109-114
    • Suzuki, T.1    Murai, A.2    Muramatsu, T.3
  • 22
    • 5144232273 scopus 로고    scopus 로고
    • Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombination
    • Ferrara L, Kmiec EB: Camptothecin enhances the frequency of oligonucleotide-directed gene repair in mammalian cells by inducing DNA damage and activating homologous recombination. Nucleic Acids Res 2004, 32:5239-5248.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5239-5248
    • Ferrara, L.1    Kmiec, E.B.2
  • 23
    • 4644339733 scopus 로고    scopus 로고
    • Enhanced oligonucleotide-directed gene targeting in mammalian cells following treatment with DNA damaging agents
    • Ferrara L, Parekh-Olmedo H, Kmiec EB: Enhanced oligonucleotide-directed gene targeting in mammalian cells following treatment with DNA damaging agents. Cell Res 2004, 300:170-179.
    • (2004) Cell Res , vol.300 , pp. 170-179
    • Ferrara, L.1    Parekh-Olmedo, H.2    Kmiec, E.B.3
  • 24
    • 33645359732 scopus 로고    scopus 로고
    • Targeted gene repair activates Chk1 and Chk2 and stalls replication in corrected cells
    • Ferrara L, Kmiec EB: Targeted gene repair activates Chk1 and Chk2 and stalls replication in corrected cells. DNA Repair (Amst) 2006, 5:422-431.
    • (2006) DNA Repair (Amst) , vol.5 , pp. 422-431
    • Ferrara, L.1    Kmiec, E.B.2
  • 25
    • 33847196146 scopus 로고    scopus 로고
    • Reduction of gene repair by selenomethionine with the use of single-stranded oligonucleotides
    • Schwartz TR, Kmiec EB: Reduction of gene repair by selenomethionine with the use of single-stranded oligonucleotides. BMC Mol Biol 2007, 8:7.
    • (2007) BMC Mol Biol , vol.8 , pp. 7
    • Schwartz, T.R.1    Kmiec, E.B.2
  • 28
    • 0037212097 scopus 로고    scopus 로고
    • Nucleotide replacement at two sites can be directed by modified single-stranded oligonucleotides in vitro and in vivo
    • Agarwal S, Gamper HB, Kmiec EB: Nucleotide replacement at two sites can be directed by modified single-stranded oligonucleotides in vitro and in vivo. Biomol Eng 2003, 20:7-20.
    • (2003) Biomol Eng , vol.20 , pp. 7-20
    • Agarwal, S.1    Gamper, H.B.2    Kmiec, E.B.3
  • 29
    • 23044473394 scopus 로고    scopus 로고
    • Targeted correction of a chromosomal point mutation by modified single-stranded oligonucleotides in a GFP recovery system
    • Yin WX, Wu XS, Liu G, Li ZH, Watt RM, Huang JD, Liu DP, Liang CC: Targeted correction of a chromosomal point mutation by modified single-stranded oligonucleotides in a GFP recovery system. Biochem Biophys Res Commun 2005, 334:1032-1041.
    • (2005) Biochem Biophys Res Commun , vol.334 , pp. 1032-1041
    • Yin, W.X.1    Wu, X.S.2    Liu, G.3    Zh, L.4    Watt, R.M.5    Huang, J.D.6    Liu, D.P.7    Liang, C.C.8
  • 30
    • 0029870677 scopus 로고    scopus 로고
    • Reaction mechanism of human DNA repair excision nuclease
    • Mu D, Hsu DS, Sancar A: Reaction mechanism of human DNA repair excision nuclease. J Biol Chem 1996, 271:8285-8294.
    • (1996) J Biol Chem , vol.271 , pp. 8285-8294
    • Mu, D.1    Hsu, D.S.2    Sancar, A.3
  • 32
    • 0035980003 scopus 로고    scopus 로고
    • DNA polymerase beta-mediated long patch base excision repair. Poly(ADP-ribose) polymerase-1 stimulates strand displacement DNA synthesis
    • Prasad R, Lavrik OI, Kim SJ, Kedar P, Yang XP, Vande Berg BJ, Wilson SH: DNA polymerase beta-mediated long patch base excision repair. Poly(ADP-ribose) polymerase-1 stimulates strand displacement DNA synthesis. J Biol Chem 2001, 276:32411-32414.
    • (2001) J Biol Chem , vol.276 , pp. 32411-32414
    • Prasad, R.1    Lavrik, O.I.2    Kim, S.J.3    Kedar, P.4    Yang, X.P.5    Vande Berg, B.J.6    Wilson, S.H.7
  • 34
    • 33845676733 scopus 로고    scopus 로고
    • Generation of a mouse mutant by oligonucleotide-mediated gene modification in ES cells
    • Aarts M, Dekker M, de Vries S, van der Wal A, te Riele H: Generation of a mouse mutant by oligonucleotide-mediated gene modification in ES cells. Nucleic Acids Res 2006, 34:e147.
    • (2006) Nucleic Acids Res , vol.34 , pp. e147
    • Aarts, M.1    Dekker, M.2    De Vries, S.3    Van Der Wal, A.4    Te Riele, H.5
  • 35
    • 0034995488 scopus 로고    scopus 로고
    • In vitro and in vivo nucleotide exchange directed by chimeric RNA/DNA oligonucleotides in Saccharomyces cerevisae
    • Rice MC, Bruner M, Czymmek K, Kmiec EB: In vitro and in vivo nucleotide exchange directed by chimeric RNA/DNA oligonucleotides in Saccharomyces cerevisae. Mol Microbiol 2001, 40:857-868.
    • (2001) Mol Microbiol , vol.40 , pp. 857-868
    • Rice, M.C.1    Bruner, M.2    Czymmek, K.3    Kmiec, E.B.4
  • 37
    • 0035810938 scopus 로고    scopus 로고
    • High efficiency mutagenesis, repair, and engineering of chromosomal DNA using singlestranded oligonucleotides
    • Ellis HM, Yu D, DiTizio T, Court DL: High efficiency mutagenesis, repair, and engineering of chromosomal DNA using singlestranded oligonucleotides. Proc Natl Acad Sci U S A 2001, 98:6742-6746.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 6742-6746
    • Ellis, H.M.1    Yu, D.2    DiTizio, T.3    Court, D.L.4
  • 38
    • 0037445212 scopus 로고    scopus 로고
    • Targeted gene modification in mismatch-repair-deficient embryonic stem cells by singlestranded DNA oligonucleotides
    • Dekker M, Brouwers C, te Riele H: Targeted gene modification in mismatch-repair-deficient embryonic stem cells by singlestranded DNA oligonucleotides. Nucleic Acids Res 2003, 31:e27.
    • (2003) Nucleic Acids Res , vol.31 , pp. e27
    • Dekker, M.1    Brouwers, C.2    Te Riele, H.3
  • 39
    • 4444335574 scopus 로고    scopus 로고
    • DNA replication and transcription direct a DNA strand bias in the process of targeted gene repair in mammalian cells
    • Brachman EE, Kmiec EB: DNA replication and transcription direct a DNA strand bias in the process of targeted gene repair in mammalian cells. J Cell Sci 2004, 117:3867-3874.
    • (2004) J Cell Sci , vol.117 , pp. 3867-3874
    • Brachman, E.E.1    Kmiec, E.B.2
  • 41
    • 15944373496 scopus 로고    scopus 로고
    • Implications of cell cycle progression on functional sequence correction by short singlestranded DNA oligonucleotides
    • Olsen PA, Randol M, Krauss S: Implications of cell cycle progression on functional sequence correction by short singlestranded DNA oligonucleotides. Gene Ther 2005, 12:546-551.
    • (2005) Gene Ther , vol.12 , pp. 546-551
    • Olsen, P.A.1    Randol, M.2    Krauss, S.3
  • 42
    • 0017661763 scopus 로고
    • Discrete sizes of replication intermediates in Drosophila cells
    • Blumenthal AB, Clark EJ: Discrete sizes of replication intermediates in Drosophila cells. Cell 1977, 12:183-189.
    • (1977) Cell , vol.12 , pp. 183-189
    • Blumenthal, A.B.1    Clark, E.J.2
  • 43
    • 0033120953 scopus 로고    scopus 로고
    • Chromosomal ARS1 has a single leading strand start site
    • Bielinsky AK, Gerbi SA: Chromosomal ARS1 has a single leading strand start site. Mol Cell 1999, 3:477-486.
    • (1999) Mol Cell , vol.3 , pp. 477-486
    • Bielinsky, A.K.1    Gerbi, S.A.2
  • 44
    • 0037117724 scopus 로고    scopus 로고
    • The p58 subunit of human DNA primase is important for primer initiation, elongation, and counting
    • Zerbe LK, Kuchta RD: The p58 subunit of human DNA primase is important for primer initiation, elongation, and counting. Biochemistry 2002, 41:4891-4900.
    • (2002) Biochemistry , vol.41 , pp. 4891-4900
    • Zerbe, L.K.1    Kuchta, R.D.2
  • 45
    • 0034327613 scopus 로고    scopus 로고
    • The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts
    • Gamper HB, Parekh H, Rice MC, Bruner M, Youkey H, Kmiec EB: The DNA strand of chimeric RNA/DNA oligonucleotides can direct gene repair/conversion activity in mammalian and plant cell-free extracts. Nucleic Acids Res 2000, 28:4332-4339.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4332-4339
    • Gamper, H.B.1    Parekh, H.2    Rice, M.C.3    Bruner, M.4    Youkey, H.5    Kmiec, E.B.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.