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Volumn 63, Issue 2, 2008, Pages 75-84

Determination of citrus fruit origin by using 16S rDNA fingerprinting of bacterial communities by PCR- DGGE: An application to clementine from Morocco and Spain

Author keywords

Citrus reticulata; DNA; DNA fingerprinting; Fruits; Microbial proteins; Morocco; PCR; Provenance; Spain

Indexed keywords

BACTERIA (MICROORGANISMS); CITRUS; CITRUS RETICULATA;

EID: 41449086783     PISSN: 02481294     EISSN: 1625967X     Source Type: Journal    
DOI: 10.1051/fruits:2007049     Document Type: Article
Times cited : (18)

References (29)
  • 2
    • 33747233845 scopus 로고    scopus 로고
    • Review of the current methods of analytical traceability allowing determination of the origin of foodstuffs
    • Peres B., Barlet N., Loiseau G., Montet D., Review of the current methods of analytical traceability allowing determination of the origin of foodstuffs, Food Control 18 (2007) 228-235.
    • (2007) Food Control , vol.18 , pp. 228-235
    • Peres, B.1    Barlet, N.2    Loiseau, G.3    Montet, D.4
  • 3
    • 0035192313 scopus 로고    scopus 로고
    • The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species
    • Bretó M.P., Ruiz C., Pina J.A., Asíns M.J., The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species, Mol. Phylogenet. Evol. 21 (2) (2001) 285-293.
    • (2001) Mol. Phylogenet. Evol , vol.21 , Issue.2 , pp. 285-293
    • Bretó, M.P.1    Ruiz, C.2    Pina, J.A.3    Asíns, M.J.4
  • 4
    • 0023505723 scopus 로고
    • Effect of different preservative treatment on the microbial population of Nigerian orange juice
    • Sodeko O.O., Izuagbe Y.S, Ukhun M.E., Effect of different preservative treatment on the microbial population of Nigerian orange juice, Microbios 51 (1987) 133-143.
    • (1987) Microbios , vol.51 , pp. 133-143
    • Sodeko, O.O.1    Izuagbe, Y.S.2    Ukhun, M.E.3
  • 5
    • 41449090660 scopus 로고    scopus 로고
    • Montet D., Leesing R., Gemrot F., Loiseau G., Development of an efficient method for bacterial diversity analysis: Denaturing Gradient Gel Electrophoreisis (DGGE), in: Semin. Food safety and international trade, Bangkok, Thailand, 2004.
    • Montet D., Leesing R., Gemrot F., Loiseau G., Development of an efficient method for bacterial diversity analysis: Denaturing Gradient Gel Electrophoreisis (DGGE), in: Semin. Food safety and international trade, Bangkok, Thailand, 2004.
  • 7
    • 36048958627 scopus 로고    scopus 로고
    • Determination of fish origin by using 16S rDNA fingerprinting of bacterial communities by PCR-DGGE : An application on Pangasius fish from Vietnam
    • Le Nguyen D.D., Ha N.H, Dijoux D., Loiseau G., Montet D., Determination of fish origin by using 16S rDNA fingerprinting of bacterial communities by PCR-DGGE : an application on Pangasius fish from Vietnam, Food control 19 (5) (2008) 454-460.
    • (2008) Food control , vol.19 , Issue.5 , pp. 454-460
    • Le Nguyen, D.D.1    Ha, N.H.2    Dijoux, D.3    Loiseau, G.4    Montet, D.5
  • 8
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., Dewaal E.C., Uitterlinden A.G., Profiling of complex microbial populations by denaturing gradient gel electrophoresis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol. 59 (1993) 695-700.
    • (1993) Appl. Environ. Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    Dewaal, E.C.2    Uitterlinden, A.G.3
  • 9
    • 0001868073 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) in microbial ecology
    • Akkermans A.D.L, van Elsas J.D, de Bruyn F.J, Eds, Kluwer Acad. Publ, Dordrecht, The Netherlands
    • Muyzer G., Brinkoff T., Nübel U., Santegoeds C., Schäfer H., Wawer C., Denaturing gradient gel electrophoresis (DGGE) in microbial ecology, in: Akkermans A.D.L., van Elsas J.D., de Bruyn F.J. (Eds.), Molecular microbiology ecology manual, Kluwer Acad. Publ., Dordrecht, The Netherlands, 1998, pp. 1-27.
    • (1998) Molecular microbiology ecology manual , pp. 1-27
    • Muyzer, G.1    Brinkoff, T.2    Nübel, U.3    Santegoeds, C.4    Schäfer, H.5    Wawer, C.6
  • 10
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., Smalla K., Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology, Antonie van Leeuwenhoek 73 (1) (1998) 127-141.
    • (1998) Antonie van Leeuwenhoek , vol.73 , Issue.1 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 11
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in Meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Ovreas L., Forney L., Daae F. L., Torsvik V., Distribution of bacterioplankton in Meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA, Appl. Environ. Microbiol. 63 (1997) 3367-3373.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 3367-3373
    • Ovreas, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 12
    • 0041153826 scopus 로고    scopus 로고
    • Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations
    • Ampe F., Omar N.B., Moizan C., Wacher C., Guyot J.P., Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations, Appl. Environ. Microbiol. 65 (1999) 5464-5473.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 5464-5473
    • Ampe, F.1    Omar, N.B.2    Moizan, C.3    Wacher, C.4    Guyot, J.P.5
  • 13
    • 0035403492 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques
    • Diéz B., Pedrós-Alió C., Marsh T.L., Massana R., Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques, Appl. Environ. Microbiol. 67 (2001) 2942-2951.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 2942-2951
    • Diéz, B.1    Pedrós-Alió, C.2    Marsh, T.L.3    Massana, R.4
  • 14
    • 0033823404 scopus 로고    scopus 로고
    • Microbial community dynamics during production of the Mexican fermented maize dough pozol
    • Omar N.B., Ampe F., Microbial community dynamics during production of the Mexican fermented maize dough pozol, Appl. Environ. Microbiol. 66 (2000) 3664-3673.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3664-3673
    • Omar, N.B.1    Ampe, F.2
  • 15
    • 0036795083 scopus 로고    scopus 로고
    • Succession of bacterial community structure along the Changjiang river determined by denaturing gradient gel electrophoresis and clone library analysis
    • Sekiguchi H., Watanabe M., Nakahara T., Xu B., Uchiyama H., Succession of bacterial community structure along the Changjiang river determined by denaturing gradient gel electrophoresis and clone library analysis, Appl. Environ. Microbiol. 68 (2002) 5142-5150.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 5142-5150
    • Sekiguchi, H.1    Watanabe, M.2    Nakahara, T.3    Xu, B.4    Uchiyama, H.5
  • 16
    • 1142297453 scopus 로고    scopus 로고
    • novel strategies for detection of microbes in food
    • PCR-DGGE fingerprinting
    • Ercolini D., PCR-DGGE fingerprinting: novel strategies for detection of microbes in food, J. Microbiol. Methods 56 (2004) 297-314.
    • (2004) J. Microbiol. Methods , vol.56 , pp. 297-314
    • Ercolini, D.1
  • 17
    • 1842576603 scopus 로고    scopus 로고
    • DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil
    • Watanabe T., Asakawa S., Nakamura A., Nagaoka K., Kimura M., DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil, FEMS Microbiol. Lett. 232 (2004) 153-163.
    • (2004) FEMS Microbiol. Lett , vol.232 , pp. 153-163
    • Watanabe, T.1    Asakawa, S.2    Nakamura, A.3    Nagaoka, K.4    Kimura, M.5
  • 18
    • 0000023099 scopus 로고
    • Attachment of a 40 bp G+C rich sequence (GC-clamp) to genomic DNA fragments by polymerase chain reaction results in improved detection of single-based changes
    • Sheffield V.C., Beck J.S., Stone E.M., Myzers R.M., Attachment of a 40 bp G+C rich sequence (GC-clamp) to genomic DNA fragments by polymerase chain reaction results in improved detection of single-based changes, Proc. Natl. Acad. Sci. USA 86 (1989) 232-236.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Beck, J.S.2    Stone, E.M.3    Myzers, R.M.4
  • 19
    • 0029097821 scopus 로고
    • Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent sample by denaturing gradient gel electrophoresis of 16S rDNA fragment
    • Muyzer G., Teske A., Wirsen C.O., Jannasch H.W., Phylogenetic relationship of Thiomicrospira species and their identification in deep-sea hydrothermal vent sample by denaturing gradient gel electrophoresis of 16S rDNA fragment, Arch. Microbiol. 164 (1995) 165-172.
    • (1995) Arch. Microbiol , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 20
    • 0032975678 scopus 로고    scopus 로고
    • Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses
    • Van Hannen E.J., Zwart G., van Agterveld M.P., Gons H.J., Ebert J., Laanbroek H.J., Changes in bacterial and eukaryotic community structure after mass lysis of filamentous cyanobacteria associated with viruses, Appl. Environ. Microbiol. 65 (1999) 795-801.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 795-801
    • Van Hannen, E.J.1    Zwart, G.2    van Agterveld, M.P.3    Gons, H.J.4    Ebert, J.5    Laanbroek, H.J.6
  • 21
    • 0030901922 scopus 로고    scopus 로고
    • Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S ribosomal DNA fragment
    • Kowalchuk G.A., Stephen J.R., de Boer W., Prosser J.I., Embley T.M., Woldendorp J.W., Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR amplified 16S ribosomal DNA fragment, Appl. Environ. Microbiol. 63 (1997) 1489-1497.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 1489-1497
    • Kowalchuk, G.A.1    Stephen, J.R.2    de Boer, W.3    Prosser, J.I.4    Embley, T.M.5    Woldendorp, J.W.6
  • 22
    • 0030220506 scopus 로고    scopus 로고
    • Applicability of combines amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy
    • Heyndrickx M., Vauterin L., Vandamme P., Kersters K., De Vos P., Applicability of combines amplified ribosomal DNA restriction analysis (ARDRA) patterns in bacterial phylogeny and taxonomy, J. Microbiol. Methods 26 (1996) 247-259.
    • (1996) J. Microbiol. Methods , vol.26 , pp. 247-259
    • Heyndrickx, M.1    Vauterin, L.2    Vandamme, P.3    Kersters, K.4    De Vos, P.5
  • 23
    • 0029873602 scopus 로고    scopus 로고
    • PCR detection of the two Candidatus Liberobacter species associated with greening disease of citrus
    • Jagoueix S., Bové J.M., Garnier M., PCR detection of the two Candidatus Liberobacter species associated with greening disease of citrus, Mol. Cell. Probes 10 (1) (1996) 43-50.
    • (1996) Mol. Cell. Probes , vol.10 , Issue.1 , pp. 43-50
    • Jagoueix, S.1    Bové, J.M.2    Garnier, M.3
  • 24
    • 0032866323 scopus 로고    scopus 로고
    • Detection and identification of the two Candidatus Liberobacter species associated with citrus huanglongbing by PCR amplification of ribosomal protein genes of the operon
    • Hocquellet A., Toorawa P., Bové J.M., Garnier M., Detection and identification of the two Candidatus Liberobacter species associated with citrus huanglongbing by PCR amplification of ribosomal protein genes of the operon, Mol. Cell. Probes 13 (5) (1999) 373-379.
    • (1999) Mol. Cell. Probes , vol.13 , Issue.5 , pp. 373-379
    • Hocquellet, A.1    Toorawa, P.2    Bové, J.M.3    Garnier, M.4
  • 26
    • 33747233739 scopus 로고    scopus 로고
    • Quantitative real-time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing
    • Li W., Hartung J.S., Levy L., Quantitative real-time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing, J. Microbiol. Methods 66 (1) (2006) 104-115.
    • (2006) J. Microbiol. Methods , vol.66 , Issue.1 , pp. 104-115
    • Li, W.1    Hartung, J.S.2    Levy, L.3
  • 27
    • 33745790337 scopus 로고    scopus 로고
    • Rapid, specific and quantitative assays for the detection of the endophytic bacterium Methylobacterium mesophilicum in plants
    • Lacava P.T., Li W.B., Araújo W.L., Azevedo J.L., Hartung J.S., Rapid, specific and quantitative assays for the detection of the endophytic bacterium Methylobacterium mesophilicum in plants, J. Microbiol. Methods 65 (3) (2006) 535-541.
    • (2006) J. Microbiol. Methods , vol.65 , Issue.3 , pp. 535-541
    • Lacava, P.T.1    Li, W.B.2    Araújo, W.L.3    Azevedo, J.L.4    Hartung, J.S.5
  • 28
    • 33646015090 scopus 로고    scopus 로고
    • Amplification of DNA of Xanthomonas axonopodis pv. citri from historic citrus canker herbarium specimens
    • Li W., Brlansky R.H., Hartung J.S., Amplification of DNA of Xanthomonas axonopodis pv. citri from historic citrus canker herbarium specimens, J. Microbiol. Methods 65 (2) (2006) 237-246.
    • (2006) J. Microbiol. Methods , vol.65 , Issue.2 , pp. 237-246
    • Li, W.1    Brlansky, R.H.2    Hartung, J.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.