Understanding mechanochemical coupling in kinesins using first-passage-time processes

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 71, Issue 3, 2005, Pages

  Kolomeisky, Anatoly B ^a   Stukalin, Evgeny B ^a   Popov, Alex A ^b  

^a RICE UNIVERSITY   (United States)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL ENERGY; KINESINS; MECHANOCHEMICAL COUPLING; MICROTUBULES;

BIOCHEMISTRY; DATA REDUCTION; DNA; ENZYME KINETICS; HYDROLYSIS; MATHEMATICAL MODELS; PROBABILITY;

PROTEINS;

ADENOSINE TRIPHOSPHATE; KINESIN; MOLECULAR MOTOR; PROTEIN BINDING;

BIOLOGICAL MODEL; CHEMICAL MODEL; CHEMISTRY; COMPARATIVE STUDY; COMPUTER SIMULATION; ELECTROCHEMISTRY; EVALUATION STUDY; KINETICS; MECHANICAL STRESS; MECHANICS; METABOLISM; MICROTUBULE; MOTION; MOVEMENT (PHYSIOLOGY); PHYSIOLOGY; PROCEDURES; PROTEIN CONFORMATION; STATISTICAL MODEL; VALIDATION STUDY;

ADENOSINE TRIPHOSPHATE; COMPUTER SIMULATION; ELECTROCHEMISTRY; KINESIN; KINETICS; MECHANICS; MICROTUBULES; MODELS, BIOLOGICAL; MODELS, CHEMICAL; MODELS, STATISTICAL; MOLECULAR MOTOR PROTEINS; MOTION; MOVEMENT; PROTEIN BINDING; PROTEIN CONFORMATION; STRESS, MECHANICAL;

EID: 41349113308     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.71.031902     Document Type: Article

References (31)

1. H. Lodish, A. Berk, S. L. Zipursky, and P. Matsudaira, Molecular Cell Biology, 3rd ed. (Scientific American Books, New York, 1995).
2. D. Bray, Cell Movements: From Molecules to Motility, 2nd ed. (Garland Publishing, New York, 2001), Chap. 5.
3. J. Howard, Mechanics of Motor Proteins and the Cytoskeleton (Sinauer Associates, Sunderland, MA, 2001).
4. J. Howard, A. J. Hudspeth, and R. D. Vale, Nature (London) 342, 154 (1989).
5. K. Svoboda, P. P. Mitra, and S. M. Block, Proc. Natl. Acad. Sci. U.S.A. 91, 11 782 (1994).
6. M. J. Schnitzer and S. M. Block, Nature (London) 388, 386 (1997).
7. H. Kojima, E. Muto, H. Higuchi, and T. Yanagida, Biophys. J. 73, 2012 (1997).
8. K. Visscher, M. J. Schnitzer, and S. M. Block, Nature (London) 400, 184 (1999).
9. M. J. Schnitzer, K. Visscher, and S. M. Block, Nat Cell Biol. 2, 718 (2000).
10. M. Nishiyama, E. Muto, Y. Inoue, T. Yanagida, and H. Higushi, Nat. Cell Biol. 3, 425 (2001).
11. M. Nishiyama, H. Higuchi, and T. Yanagida, Nat. Cell Biol. 4, 790 (2002).
12. C. L. Asbury, A. N. Fehr, and S. M. Block, Science 302, 2130 (2003).
13. A. Yildiz, M. Tomishige, R. D. Vale, and P. R. Selvin, Science 302, 676 (2003).
14. W. Hua, E. C. Young, M. L. Fleming, and J. Gelles, Nature (London) 388, 390 (1997).
15. D. L. Coy, M. Wagenbach, and J. Howard, J. Biol. Chem. 274, 3667 (1999).
16. N. G. van Kampen, Stochastic Processes in Physics and Chemistry, 2nd ed. (Elsevier. Amsterdam, 1997), Chap. 12.
17. H. Qian, Biophys. Chem. 67, 263 (1997).
18. A. B. Kolomeisky and B. Widom, J. Stat. Phys. 93, 633 (1998).
19. M. E. Fisher and A. B. Kolomeisky, Proc. Natl. Acad. Sci. U.S.A. 96, 6597 (1999).
20. M. E. Fisher and A. B. Kolomeisky, Physica A 274, 241 (1999).
21. A. B. Kolomeisky and M. E. Fisher, Physica A 279, 1 (2000).
22. A. B. Kolomeisky and M. E. Fisher, J. Chem. Phys. 113, 10 8677 (2000).
23. A. B. Kolomeisky, J. Chem. Phys. 115, 72539 (2001).
24. M. E. Fisher and A. B. Kolomeisky, Proc. Natl. Acad. Sci. U.S.A. 98, 77483 (2001).
25. A. B. Kolomeisky and M. E. Fisher, Biophys. J. 84, 1642 (2003).
26. F. Jülicher, A. Ajdari, and J. Prost, Rev. Mod. Phys. 69, 1269 (1997).
27. A. Mogilner, A. J. Fisher, and R. J. Baskin, J. Theor. Biol. 211, 143 (2001).
28. A. Parmeggiani, F. Jülicher, L. Peliti, and J. Prost, Europhys. Lett. 56, 603 (2001).
29. A. D. Mehta, R. S. Rock, M. Rief, J. A. Spudich, M. S. Mooseker, and R. E. Cheney, Nature (London) 400, 590 (1999).
30. P. A. Pury and M. O. Caceres, J. Phys. A 36, 2695 (2003).
31. M. E. Fisher (private communication).