-
1
-
-
0041335630
-
-
Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty SC, Brinkac LM, Beanan MJ, Haft DH, Nelson WC, Davidsen TM, Zafar N, Zhou L, Liu J, Yuan Q, Khouri HM, Fedorova NB, Tran B, Russell D, Berry KJ, Utterback TR, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci USA 2003;100:10181-10186.
-
Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty SC, Brinkac LM, Beanan MJ, Haft DH, Nelson WC, Davidsen TM, Zafar N, Zhou L, Liu J, Yuan Q, Khouri HM, Fedorova NB, Tran B, Russell D, Berry KJ, Utterback TR, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci USA 2003;100:10181-10186.
-
-
-
-
2
-
-
0011542799
-
The Pfam protein families database
-
Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nucleic Acids Res 2002;30:276-280.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 276-280
-
-
Bateman, A.1
Birney, E.2
Cerruti, L.3
Durbin, R.4
Etwiller, L.5
Eddy, S.R.6
Griffiths-Jones, S.7
Howe, K.L.8
Marshall, M.9
Sonnhammer, E.L.10
-
3
-
-
0034603210
-
The crystal structure of human eukaryotic release factor eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis
-
Song H, Mugnier P, Das AK, Webb HM, Evans DR, Tuite MF, Hemmings BA, Barford D. The crystal structure of human eukaryotic release factor eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell 2000;100:311-321.
-
(2000)
Cell
, vol.100
, pp. 311-321
-
-
Song, H.1
Mugnier, P.2
Das, A.K.3
Webb, H.M.4
Evans, D.R.5
Tuite, M.F.6
Hemmings, B.A.7
Barford, D.8
-
4
-
-
29244487090
-
Crystal structure of the ribosome in complex with release factor RF1 and RF2 bound to a cognate stop codon
-
Petry S, Broadersen DE, Murphy-IV FV, Dunham CM, Selmer M, Tarry JM, Kelley AC, Ramakrishnan V. Crystal structure of the ribosome in complex with release factor RF1 and RF2 bound to a cognate stop codon. Cell 2005;123:1255-1266.
-
(2005)
Cell
, vol.123
, pp. 1255-1266
-
-
Petry, S.1
Broadersen, D.E.2
Murphy-IV, F.V.3
Dunham, C.M.4
Selmer, M.5
Tarry, J.M.6
Kelley, A.C.7
Ramakrishnan, V.8
-
5
-
-
29144491478
-
Molecular basis for bacterial class I release factor methylation by PrmC
-
Graille M, Heurgue-Hamard V, Champ S, Mora L, Scrima N, Ulryck N, Tilbeurgh HV, Buckingham RH. Molecular basis for bacterial class I release factor methylation by PrmC. Mol Cell 2005;20:917-927.
-
(2005)
Mol Cell
, vol.20
, pp. 917-927
-
-
Graille, M.1
Heurgue-Hamard, V.2
Champ, S.3
Mora, L.4
Scrima, N.5
Ulryck, N.6
Tilbeurgh, H.V.7
Buckingham, R.H.8
-
6
-
-
23044509110
-
NMR data collection and analysis protocol for high-throughput protein structure determination
-
Liu G, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T. NMR data collection and analysis protocol for high-throughput protein structure determination. Proc Natl Acad Sci USA 2005;102:10487-10492.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10487-10492
-
-
Liu, G.1
Shen, Y.2
Atreya, H.S.3
Parish, D.4
Shao, Y.5
Sukumaran, D.K.6
Xiao, R.7
Yee, A.8
Lemak, A.9
Bhattacharya, A.10
Acton, T.A.11
Arrowsmith, C.H.12
Montelione, G.T.13
Szyperski, T.14
-
7
-
-
20144387833
-
Robot cloning and protein production platform of the Northeast Structural Genomics Consortium
-
Acton TB, Gunsalus KS, Xiao R, Ma LC, Aramini JM, Baran MC, Chiang YW, Climent T, Cooper B, Denissova N, Douglas SM, Everett JK, Ho CK, Macapagal D, Paranji RK, Shastry R, Shih L-J, Swapna GVT, Wilson M, Wu M, Gerstein M, Inouye M, Hunt JF, Montelione GT. Robot cloning and protein production platform of the Northeast Structural Genomics Consortium. Meth Enzymol 2005;394:210-243.
-
(2005)
Meth Enzymol
, vol.394
, pp. 210-243
-
-
Acton, T.B.1
Gunsalus, K.S.2
Xiao, R.3
Ma, L.C.4
Aramini, J.M.5
Baran, M.C.6
Chiang, Y.W.7
Climent, T.8
Cooper, B.9
Denissova, N.10
Douglas, S.M.11
Everett, J.K.12
Ho, C.K.13
Macapagal, D.14
Paranji, R.K.15
Shastry, R.16
Shih, L.-J.17
Swapna, G.V.T.18
Wilson, M.19
Wu, M.20
Gerstein, M.21
Inouye, M.22
Hunt, J.F.23
Montelione, G.T.24
more..
-
9
-
-
3042788977
-
G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment
-
Atreya HS, Szyperski T. G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment. Proc Natl Acad Sci USA 2004;101:9642-9647.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9642-9647
-
-
Atreya, H.S.1
Szyperski, T.2
-
10
-
-
21244479278
-
G-matrix Fourier transform NOESY based protocol for high-quality protein structure determination
-
Shen Y, Atreya HS, Liu G, Szyperski T. G-matrix Fourier transform NOESY based protocol for high-quality protein structure determination. J Am Chem Soc 2005;127:9085-9099.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 9085-9099
-
-
Shen, Y.1
Atreya, H.S.2
Liu, G.3
Szyperski, T.4
-
11
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F, Grzesiek G, Vuister GW, Zhu G, Pfeifer J, Bax A. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 1995;6:277-293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, G.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
12
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
-
Bartels C, Xia T, Billeter M, Güntert P, Wüthrich K. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J Biomol NMR 1995;6:1-10.
-
(1995)
J Biomol NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
13
-
-
0031580198
-
Automated analysis of protein NMR assignments using methods from artificial intelligence
-
Zimmerman DE, Kulikowski CA, Feng W, Tashiro M, Chien C-Y, Rios CB, Moy FJ, Powers R, Montelione GT. Automated analysis of protein NMR assignments using methods from artificial intelligence. J Mol Biol 1997;269:592-610.
-
(1997)
J Mol Biol
, vol.269
, pp. 592-610
-
-
Zimmerman, D.E.1
Kulikowski, C.A.2
Feng, W.3
Tashiro, M.4
Chien, C.-Y.5
Rios, C.B.6
Moy, F.J.7
Powers, R.8
Montelione, G.T.9
-
14
-
-
0030339738
-
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
-
Laskowski RA, Rullmannn JA, MacArthur MW, Kaptein R, Thornton JM. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR 1996;8:477-486.
-
(1996)
J Biomol NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmannn, J.A.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
15
-
-
0034487752
-
Exploring steric constraints on protein mutations using MAGE/PROBE
-
Word JM, Bateman RC, Presley BK, Lovell SC, Richardson DC. Exploring steric constraints on protein mutations using MAGE/PROBE. Protein Sci 2000;9:2251-2259.
-
(2000)
Protein Sci
, vol.9
, pp. 2251-2259
-
-
Word, J.M.1
Bateman, R.C.2
Presley, B.K.3
Lovell, S.C.4
Richardson, D.C.5
-
16
-
-
13644252170
-
Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics
-
Huang YJ, Powers R, Montelione GT. Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics. J Am Chem Soc 2005;127:1665-1674.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 1665-1674
-
-
Huang, Y.J.1
Powers, R.2
Montelione, G.T.3
-
17
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program CYANA
-
Güntert P, Mumenthaler C, Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program CYANA. J Mol Biol 1997;273:283-298.
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
19
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shifts and sequence homology
-
Cornilescu G, Delaglio F, Bax A. Protein backbone angle restraints from searching a database for chemical shifts and sequence homology. J Biomol NMR 1999;13:289-302.
-
(1999)
J Biomol NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
20
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm CYANA
-
Herrmann T, Güntert P, Wüthrich K. Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm CYANA. J Mol Biol 2002;319:209-227.
-
(2002)
J Mol Biol
, vol.319
, pp. 209-227
-
-
Herrmann, T.1
Güntert, P.2
Wüthrich, K.3
-
21
-
-
16244377434
-
An integrated platform for automated analysis of protein NMR structures
-
Huang YJ, Moseley HN, Baran MC, Arrowsmith C, Powers R, Tejero R, Szyperski T, Montelione GT. An integrated platform for automated analysis of protein NMR structures. Meth Enzymol 2005;394:111-141.
-
(2005)
Meth Enzymol
, vol.394
, pp. 111-141
-
-
Huang, Y.J.1
Moseley, H.N.2
Baran, M.C.3
Arrowsmith, C.4
Powers, R.5
Tejero, R.6
Szyperski, T.7
Montelione, G.T.8
-
22
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998;54:905-921.
-
(1998)
Acta Crystallogr D Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
23
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M. Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 1996;14:51-55.
-
(1996)
J Mol Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
24
-
-
0029785147
-
Mapping the protein universe
-
Holm L, Sander C. Mapping the protein universe. Science 1996;273:595-602.
-
(1996)
Science
, vol.273
, pp. 595-602
-
-
Holm, L.1
Sander, C.2
-
25
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel E, Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D 2004;60:2256-2268.
-
(2004)
Acta Crystallogr D
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
26
-
-
0035697089
-
Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1
-
Vestergaard B, Van LB, Anderson GR, Nyborg J, Buckingham R, Kjeldgaard M. Bacterial polypeptide release factor RF2 is structurally distinct from eukaryotic eRF1. Mol Cell 2001;8:1375-1382.
-
(2001)
Mol Cell
, vol.8
, pp. 1375-1382
-
-
Vestergaard, B.1
Van, L.B.2
Anderson, G.R.3
Nyborg, J.4
Buckingham, R.5
Kjeldgaard, M.6
|