Developmental capacity of porcine nuclear transfer embryos correlate with levels of chromatin-remodeling transcripts in donor cells

Molecular Reproduction and Development

Volumn 75, Issue 5, 2008, Pages 766-776

  Magnani, Luca ^a   Lee, Kiho ^a   Fodor, William L ^b,c   Machaty, Zoltan ^a   Cabot, Ryan A ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF CONNECTICUT   (United States)

^c Viacord Inc   (United States)

Author keywords

Chromatin; Embryo; Nuclear transfer

Indexed keywords

ANIMAL CELL; ARTICLE; CELL CULTURE; CELL ISOLATION; CELL NUCLEUS TRANSPLANTATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; CONTROLLED STUDY; CORRELATION ANALYSIS; CUMULUS OOPHORUS; DNA MODIFICATION; EMBRYO; EMBRYO DEVELOPMENT; EPIGENETICS; FIBROBLAST; GENE EXPRESSION; IMMUNOCYTOCHEMISTRY; METAPHASE; NONHUMAN; OLFACTORY BULB; OOCYTE; OOCYTE MATURATION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RNA ISOLATION; SOMATIC CELL; SPLEEN CELL; STATISTICAL SIGNIFICANCE; STEM CELL;

ANIMALS; BLASTOCYST; CHROMATIN ASSEMBLY AND DISASSEMBLY; CLONING, ORGANISM; EMBRYO CULTURE TECHNIQUES; EPIGENESIS, GENETIC; GENE EXPRESSION REGULATION, DEVELOPMENTAL; METAPHASE; NUCLEAR PROTEINS; NUCLEAR TRANSFER TECHNIQUES; OOCYTES; SWINE;

SUS;

EID: 41149088952     PISSN: 1040452X     EISSN: 10982795     Source Type: Journal    
DOI: 10.1002/mrd.20818     Document Type: Article

References (67)

1. Abeydeera LR, Wang WH, Prather RS, Day BN. 1998. Maturation in vitro of pig oocytes in protein-free culture media: Fertilization and subsequent embryo development in vitro. Biol Reprod 58:1316-1320.
2. Archer GS, Dindot S, Friend TH, Walker S, Zaunbrecher G, Lawhorn B, Piedrahita JA. 2003. Hierarchical phenotypic and epigenetic variation in cloned swine. Biol Reprod 69:430-436.
3. Barak O, Lazzaro MA, Lane WS, Speicher DW, Picketts DJ, Shiekhattar R. 2003. Isolation of human NURF: A regulator of Engrailed gene expression. Embo J 22:6089-6100.
4. Becker PB, Horz W. 2002. ATP-dependent nucleosome remodeling. Annu Rev Biochem 71:247-273.
5. Bowen NJFN, Kajita M, Wade PA. 2004. Mi-2/NuRD: Multiple complexes for many purposes. Biochim Biophys Acta 1677:52-57.
6. Bultman S, Magnuson T. 2000. A Brg1 Null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes. Molecular Cell 6:1287-1295.
7. Bultman SJ, Gebuhr TC, Pan H, Svoboda P, Schultz RM, Magnuson T. 2006. Maternal BRG1 regulates zygotic genome activation in the mouse. Genes Dev 20:1744-1754.
8. Coisy M, Dantonel J-C. 2004. Cyclin-A repression in quiescent cells is associated with chromatin remodeling of its promoter and requires Brahma/SNF2(alpha). Molecular Cell 15:43-56.
9. Collins N, Poot RA, Kukimoto I, Garcia-Jimenez C, Dellaire G, Varga-Weisz PD. 2002. An ACF1-ISWI chromatin-remodeling complex is required for DNA replication through heterochromatin. Nat Genet 32:627-632.
10. Dean W, Santos F, Stojkovic M, Zakhartchenko V, Walter J, Wolf E, Reik W. 2001. Conservation of methylation reprogramming in mammalian development: Aberrant reprogramming in cloned embryos. Proc Natl Acad Sci U S A 98:13734-13738.
11. Dean W, Lucifero D, Santos F. 2005. DNA methylation in mammalian development and disease. Birth Defects Res C Embryo Today 75:98-111.
12. Deuring R, Fanti L, Armstrong JA, Sarte M, Papoulas O, Prestel M, Daubresse G, Verardo M, Moseley SL, Berloco M, Tsukiyama T, Wu C, Pimpinelli S, Tamkun JW. 2000. The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo. Mol Cell 5:355-365.
13. Duvigneau JCHR, Groiss S, Gemeiner M. 2005. Quantitative simultaneous multiplex real-time PCR for the detection of porcine cytokines. J Immunol Methods 306:1-2.
14. Dyce PW, Zhu H, Craig J, Li J. 2004. Stem cells with multilineage potential derived from porcine skin. Biochem Biophys Res Commun 316:651-658.
15. Eberharter A, Becker PB. 2004. ATP-dependent nucleosome remodelling: Factors and functions. J Cell Sci 117:3707-3711.
16. Eissenberg J. 2001. Molecular biology of the chromo domain: An ancient chromatin module comes of age. Gene 275:19-29.
17. Feng QZY. 2003. The NuRD complex: Linking histone modification to nucleosome remodeling. Curr Top Microbiol Immunol 274:269-290.
18. Flaus A, Owen-Hughes T. 2004. Mechanisms for ATP-Dependent chromatin remodeling: Farewelllto the tuna-can octamer? Curr Opin Genet Dev 14:165-173.
19. Gan QYT, McDonald OG, Owens GK. 2007. Concise review: Epigenetic mechanisms contribute to pluripotency and cell lineage determination of embryonic stem cells. Stem Cells 25:2-9.
20. Gebuhr TC, Kovalev GI, Bultman S, Godfrey V, Su L, Magnuson T. 2003. The role of Brg1, a catalytic subunit of mammalian chromatin-remodeling complexes, in T cell development. J Exp Med 198:1937-1949.
21. Han YM, Kim SH, Kang YK. 2006. Analysis of DNA methylation profiles in preimplantation embryos using bisulfite mutagenesis. Methods Mol Biol 325:251-260.
22. Hiiragi T, Solter D. 2005. Reprogramming is essential in nuclear transfer. Mol Reprod Dev 70:417-421.
23. Huang M, Qian F, Hu Y, Ang C, Li Z, Wen Z. 2002. Chromatin-remodelling factor BRG1 selectively activates a subset of interferon-alpha-inducible genes. Nat Cell Biol 4:774-781.
24. Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT. 1997. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90:145-155.
25. Jin HF, Kumar BM, Kim JG, Song HJ, Jeong YJ, Cho SK, Balasubramanian S, Choe SY, Rho GJ. 2007. Enhanced development of porcine embryos cloned from bone marrow mesenchymal stem cells. Int J Dev Biol 51:85-90.
26. Jones DOCI, Singh PB. 2000. Mammalian chromodomain proteins: Their role in genome organisation and expression. Bioessays 2:124-137.
27. Kaji K, Kudo K. 2004. the mechanism of sperm-oocyte fusion in mammals. Reproduction 127:424-429.
28. Kang YK, Koo DB, Park JS, Choi YH, Chung AS, Lee KK, Han YM. 2001a. Aberrant methylation of donor genome in cloned bovine embryos. Nat Genet 28:173-177.
29. Kang YK, Koo DB, Park JS, Choi YH, Kim HN, Chang WK, Lee KK, Han YM. 2001b. Typical demethylation events in cloned pig embryos. Clues on species-specific differences in epigenetic reprogramming of a cloned donor genome. J Biol Chem 276:39980-39984.
30. Kang YK, Koo DB, Park JS, Choi YH, Lee KK, Han YM. 2001c. Differential inheritance modes of DNA methylation between euchromatic and heterochromatic DNA sequences in ageing fetal bovine fibroblasts. FEBS Lett 498:1-5.
31. Kang YK, Lee KK, Han YM. 2003. Reprogramming DNA methylation in the preimplantation stage: Peeping with Dolly's eyes. Curr Opin Cell Biol 15:290-295.
32. Kassabov SR, Vartholomew B. 2003. SWI/SNF unwraps, slides, and rewraps the nucleosome. Molecular Cell 11:391-403.
33. Kireeva M, Kashlev M. 2005. Nature of the nucleosomal barrier to RNA polimerase II. Molecular Cell 18:97-108.
34. Klochendler-Yeivin A, Muchardt C, Yaniv M. 2002. SWI/SNF chromatin remodeling and cancer. Curr Opin Genet Dev 12:73-79.
35. Koonin EVZS, Lucchesi JC. 1995. The chromo superfamily: New members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin. Nucleic Acids Res 23:4229-4233.
36. Langst G, Becker PB. 2004. Nucleosome remodeling: One mechanism, many phenomena? Biochim Biophys Acta 1677:58-63.
37. Lazzaro MA, Picketts DJ. 2001. Cloning and characterization of the murine Imitation Switch (ISWI) genes: Differential expression patterns suggest distinct developmental roles for Snf2h and Snf2l. J Neurochem 77:1145-1156.
38. Lazzaro MA, Pepin D, Pescador N, Murphy BD, Vanderhyden BC, Picketts DJ. 2006. The imitation switch protein SNF2L regulates steroidogenic acute regulatory protein expression during terminal differentiation of ovarian granulosa cells. Mol Endocrinol 20:2406-2417.
39. Li E. 2002. Chromatin modification and epigenetic reprogramming in mammalian development. Nat Rev Genet 3:662-673.
40. Lickert H, Bruneau BG. 2004. Baf60c is esential for function of BAF chromatin remodelling complexes in heart development. Nature 432:107-112.
41. Linder B, Cabot R, Rupp RAW. 2004. The SNF2 domain protein family in higher vertebrates displays dynamic expression pattern in xenopus laevis embryos. Gene 326:59-66.
42. Lusser A, Kadonaga JT. 2003. Chromatin remodeling by ATP-dependent molecular machines. BioEssays 25:1192-1200.
43. Magnani L, Cabot RA. 2007. Developmental arrest induced in cleavage stage porcine embryos following microinjection of mRNA encoding Brahma (Smarca 2), a chromatin remodeling protein. Mol Reprod Dev 74:1262-1267.
44. Meissner A, Jaenisch R. 2006. Mammalian nuclear transfer. Dev Dyn 235:2460-2469.
45. Mellor J, Morillon A. 2004. ISWI complexes in Saccharomyces cerevisiae. Biochim Biophys Acta 1677:100-112.
46. Morrison AJSX. 2006. Chromatin modifications in DNA repair. Results Probl Cell Differ 41:109-125.
47. Muchardt C, Yaniv M. 2001. When the SWI/SNF complex remodels the cell cycle. Oncogene 20:3067-3075.
48. Ohgane J, Wakayama T, Kogo Y, Senda S, Hattori N, Tanaka S, Yanagimachi R, Shiota K. 2001. DNA methylation variation in cloned mice. Genesis 30:45-50.
49. Pagano SF, Impagnatiello F, Girelli M, Cova L, Grioni E, Onofri M, Cavallaro M, Etteri S, Vitello F, Giombini S, Solero CL, Parati EA. 2000. Isolation and characterization of neural stem cells from the adult human olfactory bulb. Stem Cells 18:295-300.
50. Reisman DN, Sciarrotta J, Bouldin TW, Weissman BE, Funkhouser WK. 2005. The expression of the SWI/SNF ATPase subunits BRG1 and BRM in normal human tissues. Appl Immunohistochem Mol Morphol 13:66-74.
51. Reyes JC, Yaniv M. 1998. Altered control of cellular proliferation in the absence of mammalian brahma. EMBO J 17:6979-6991.
52. Saha A, Wittmeyer J, Cairns BR. 2006. Chromatin remodelling: The industrial revolution of DNA around histones. Nat Rev Mol Cell Biol 7:437-447.
53. Saito S, Liu B, Yokoyama K. 2004. Animal embryonic stem (ES) cells: Self-renewal, pluripotency, transgenesis and nuclear transfer. Hum Cell 17:107-115.
54. Santoro R, Li J, Grummt I. 2002. The nucleolar remodeling complex NoRC mediates heterochromatin formation and silencing of ribosomal gene transcription. Nat Genet 32:393-396.
55. Santos F, Reik W. 2003. Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos. Curr Biol 13:1116-1121.
56. Stopka T, Skoultchi AI. 2003. The ISWI ATPase Snf2h is required for early mouse development. Proc Natl Acad Sci U S A 100:14097-14102.
57. Sudarsanam P, Winston F. 2000. The Swi/Snf family nucleosome-remodeling complexes and transcriptional control. Trends Genet 16:345-351.
58. Sung LY, Gao S, Shen H, Yu H, Song Y, Smith SL, Chang CC, Inoue K, Kuo L, Lian J, Li A, Tian XC, Tuck DP, Weissman SM, Yang X, Cheng T. 2006. Differentiated cells are more efficient than adult stem cells for cloning by somatic cell nuclear transfer. Nat Genet 38:1323-1328.
59. Thompson PMGT, Kok M, White PS, Brodeur GM. 2003. CHD5, a new member of the chromodomain gene family, is preferentially expressed in the nervous system. Oncogene 22:1002-1011.
60. Tsukiyama T, Wu C. 1995. Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83:1011-1020.
61. Tsukiyama T, Daniel C, Tamkun J, Wu C. 1995. ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83:1021-1026.
62. Ulyanova NP, Schnitzler GR. 2005. Human SWI/SNF generates abundant, structurally altered dinucleosomes on polynucleosomal templates. Mol Cell Biol 25:11156-11170.
63. Varga-Weisz PD, Wilm M, Bonte E, Dumas K, Mann M, Becker PB. 1997. Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388:598-602.
64. Wakayama T, Tateno H, Mombaerts P, Yanagimachi R. 2000. Nuclear transfer into mouse zygotes. Nat Genet 24:108-109.
65. Wang F, Zhang R, Beischlag TV, Muchardt C, Yaniv M, Hankinson O. 2004. Roles of Brahma and Brahma/SWI2-related gene 1 in hypoxic induction of the erythropoietin gene. J Biol Chem 279:46733-46741.
66. Whitworth KM, Agca C, Kim JG, Patel RV, Springer GK, Bivens NJ, Forrester LJ, Mathialagan N, Green JA, Prather RS. 2005. Transcriptional profiling of pig embryogenesis by using a 15-K member unigene set specific for pig reproductive tissues and embryos. Biol Reprod 72:1437-1451.
67. Young LE, Sinclair KD, Wilmut I. 1998. Large offspring syndrome in cattle and sheep. Rev Reprod 3:155-163.