International research networks in viral structural proteomics: Again, lessons from SARS

Antiviral Research

Volumn 78, Issue 1, 2008, Pages 47-50

  Canard, Bruno ^a   Joseph, Jeremiah S ^b   Kuhn, Peter ^b  

^a AIX MARSEILLE UNIVERSITY   (France)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

FSPS; Infectious diseases; SARS CoV; Structural genomics; VIZIER

Indexed keywords

PROTEOME; VIRUS PROTEIN;

ARTICLE; ASIA; BIOLOGICAL WARFARE; EPIDEMIC; EUROPE; HOST; HUMAN; NONHUMAN; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEOMICS; RNA VIRUS; SARS CORONAVIRUS; SEVERE ACUTE RESPIRATORY SYNDROME; VIRUS MORPHOLOGY; WESTERN HEMISPHERE;

COMMUNICABLE DISEASES, EMERGING; HUMANS; INTERNATIONAL COOPERATION; MODELS, MOLECULAR; PROTEOMICS; RESEARCH; SARS VIRUS; SEVERE ACUTE RESPIRATORY SYNDROME; VIRAL PROTEINS;

RNA VIRUSES; SARS CORONAVIRUS;

EID: 40749110143     PISSN: 01663542     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.antiviral.2007.09.007     Document Type: Article

References (28)

1. Almeida M.S., Johnson M.A., Herrmann T., Geralt M., and Wuthrich K. Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus. J. Virol. 81 (2007) 3151-3161
2. Anand K., Ziebuhr J., Wadhwani P., Mesters J.R., and Hilgenfeld R. Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs. Science 300 (2003) 1763-1767
3. Brooun A., Foster S.A., Chrencik J.E., Chien E.Y., Kolatkar A.R., Streiff M., Ramage P., Widmer H., Weckbecker G., and Kuhn P. Remedial strategies in structural proteomics: expression, purification, and crystallization of the Vav1/Rac1 complex. Protein Expr. Purif. 53 (2007) 51-62
4. Campanacci V., Egloff M.P., Longhi S., Ferron F., Rancurel C., Salomoni A., Durousseau C., Tocque F., Bremond N., Dobbe J.C., Snijder E.J., Canard B., and Cambillau C. Structural genomics of the SARS coronavirus: cloning, expression, crystallization and preliminary crystallographic study of the Nsp9 protein. Acta Crystallogr. D. Biol. Crystallogr. 59 (2003) 1628-1631
5. Imbert I., Guillemot J.C., Bourhis J.M., Bussetta C., Coutard B., et al. A second, non-canonical RNA-dependent RNA polymerase in SARS coronavirus. EMBO J. 25 (2006) 4933-4942
6. Joseph J.S., Saikatendu K.S., Subramanian V., Neuman B.W., Brooun A., Griffith M., Moy K., Yadav M.K., Velasquez J., Buchmeier M.J., Stevens R.C., and Kuhn P. Crystal structure of nonstructural protein 10 from the severe acute respiratory syndrome coronavirus reveals a novel fold with two zinc-binding motifs. J. Virol. 80 (2006) 7894-7901
7. Joseph J.S., Saikatendu K.S., Subramanian V., Neuman B.W., Buchmeier M.J., Stevens R.C., and Kuhn P. Crystal structure of a monomeric form of severe acute respiratory syndrome coronavirus endonuclease nsp15 suggests a role for hexamerization as an allosteric switch. J. Virol. 81 (2007) 6700-6708
8. Lesley S.A., Kuhn P., Godzik A., Deacon A.M., Mathews I., Kreusch A., Spraggon G., Klock H.E., McMullan D., Shin T., Vincent J., Robb A., Brinen L.S., Miller M.D., McPhillips T.M., Miller M.A., Scheibe D., Canaves J.M., Guda C., Jaroszewski L., Selby T.L., Elsliger M.A., Wooley J., Taylor S.S., Hodgson K.O., Wilson I.A., Schultz P.G., and Stevens R.C. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 11664-11669
9. Li F., Li W., Farzan M., and Harrison S.C. Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309 (2005) 1864-1868
10. Marra M.A., et al. The Genome sequence of the SARS-associated coronavirus. Science 300 (2003) 1399-1404
11. Meier C., Aricescu A.R., Assenberg R., Aplin R.T., Gilbert R.J., Grimes J.M., and Stuart D.I. The crystal structure of ORF-9b, a lipid binding protein from the SARS coronavirus. Structure 14 (2006) 1157-1165
12. Nelson C.A., Pekosz A., Lee C.A., Diamond M.S., and Fremont D.H. Structure and intracellular targeting of the SARS-coronavirus Orf7a accessory protein. Structure 13 (2005) 75-85
13. Peiris J.S., Lai S.T., Poon L.L., Guan Y., Yam L.Y., Lim W., Nicholls J., Yee W.K., Yan W.W., Cheung M.T., et al. Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet 361 (2003) 1319-1325
14. Peti W., Johnson M.A., Herrmann T., Neuman B.W., Buchmeier M.J., Nelson M., Joseph J., Page R., Stevens R.C., Kuhn P., and Wuthrich K. Structural genomics of the severe acute respiratory syndrome coronavirus: nuclear magnetic resonance structure of the protein nsP7. J. Virol. 79 (2005) 12905-12913
15. Ratia K., Saikatendu K.S., Santarsiero B.D., Barretto N., Baker S.C., Stevens R.C., and Mesecar A.D. Severe acute respiratory syndrome coronavirus papain-like protease: structure of a viral deubiquitinating enzyme. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 5717-5722
16. Ricagno S., Egloff M.P., Ulferts R., Coutard B., Nurizzo D., Campanacci V., Cambillau C., Ziebuhr J., and Canard B. Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 11892-11897
17. Rota P.A., et al. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science 300 (2003) 1394-1399
18. Saikatendu K.S., Joseph J.S., Subramanian V., Clayton T., Griffith M., Moy K., Velasquez J., Neuman B.W., Buchmeier M.J., Stevens R.C., and Kuhn P. Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1″-phosphate dephosphorylation by a conserved domain of nsP3. Structure 13 (2005) 1665-1675
19. Saikatendu K.S., Joseph J.S., Subramanian V., Neuman B.W., Buchmeier M.J., Stevens R.C., and Kuhn P. Ribonucleocapsid formation of severe acute respiratory syndrome coronavirus through molecular action of the N-terminal domain of N protein. J. Virol. 81 (2007) 3913-3921
20. Serrano P., Almeida M.S., Johnson M.A., and Wuthrich K. NMR assignment of the protein nsp3a from SARS-CoV. J. Biomol. NMR 36 (2006) 45
21. Snijder E.J., Bredenbeek P.J., Dobbe J.C., Thiel V., Ziebuhr J., Poon L.L., Guan Y., Rozanov M., Spaan W.J., and Gorbalenya A.E. Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J. Mol. Biol. 331 (2003) 991-1004
22. Stuart D., Jones Y.E., Wilson K.S., and Daenke S. Structural proteomics in Europe. Acta D 62 Pt. 10 (2006)
23. Su D., Lou Z., Sun F., Zhai Y., Yang H., Zhang R., Joachimiak A., Zhang X.C., Bartlam M., and Rao Z. Dodecamer structure of severe acute respiratory syndrome coronavirus nonstructural protein nsp10. J. Virol. 80 (2006) 7902-7908
24. Sutton G., Fry E., Carter L., Sainsbury S., Walter T., Nettleship J., Berrow N., Owens R., Gilbert R., Davidson A., Siddell S., Poon L.L., Diprose J., Alderton D., Walsh M., Grimes J.M., and Stuart D.I. The nsp9 replicase protein of SARS-coronavirus, structure and functional insights. Structure 12 (2004) 341-353
25. Thiel V., Ivanov K.A., Putics A., Hertzig T., Schelle B., Bayer S., Weissbrich B., Snijder E.J., Rabenau H., Doerr H.W., Gorbalenya A.E., and Ziebuhr J. Mechanisms and enzymes involved in SARS coronavirus genome expression. J. Gen. Virol. 84 (2003) 2305-2315
26. Xu X., Zhai Y., Sun F., Lou Z., Su D., Xu Y., Zhang R., Joachimiak A., Zhang X.C., Bartlam M., and Rao Z. New antiviral target revealed by the hexameric structure of mouse hepatitis virus nonstructural protein nsp15. J. Virol. 80 (2006) 7909-7917
27. Zhai Y., Sun F., Li X., Pang H., Xu X., Bartlam M., and Rao Z. Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer. Nat. Struct. Mol. Biol. 12 (2005) 980-986
28. Zeng F.Y., et al. The complete genome sequence of severe acute respiratory syndrome coronavirus strain HKU-39849 (HK-39). Exp. Biol. Med. (Maywood) 228 (2003) 866-873