Paracoccus halophilus sp. nov., isolated from marine sediment of the South China Sea, China and emended description of genus Paracocccus Davis 1969

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 1, 2008, Pages 257-261

  Liu, Zhi Pei ^a   Wang, Bao Jun ^a   Liu, Xing Yu ^a   Dai, Xin ^a   Liu, Ying Hao ^a   Liu, Shuang Jiang ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CARDIOLIPIN; CATALASE; CYTOSINE; FATTY ACID; GLYCOLIPID; GUANINE; NITRATE; OXIDOREDUCTASE; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; RNA 16S; SODIUM CHLORIDE; SULFUR; UBIDECARENONE; UREASE; SEA WATER;

ARTICLE; AUTOTROPHY; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CELL MOTILITY; CELL SHAPE; CHINA; CONTROLLED STUDY; DNA CONTENT; ENZYME ACTIVITY; GRAM NEGATIVE BACTERIUM; HETEROTROPHY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS; PARACOCCUS HALOPHILUS; PARACOCCUS SULFUROXIDANS; PARACOCCUS VERSUTUS; PH; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; TEMPERATURE SENSITIVITY; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); COCCOIDEA; NEGIBACTERIA; PARACOCCUS (BACTERIUM); PARACOCCUS (MEALYBUG); PARACOCCUS VERSUTUS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; GEOLOGIC SEDIMENTS; MOLECULAR SEQUENCE DATA; PARACOCCUS; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY;

EID: 40449093936     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65237-0     Document Type: Article

References (38)

1. Allen, M. B. (1959). Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte. Arch Mikrobiol 32, 270-277.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
3. Berry, A., Janssens, D., Hümbelin, V., Jore, J. P. M., Hoste, B., Cleenwerck, I., Vancanneyt, M., Bretzel, W., Mayer, A. F. & other authors (2003). Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int J Syst Evol Microbiol 53, 231-238.
4. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
5. Davis, D. H., Doudoroff, M., Stanier, R. Y. & Mandel, M. (1969). Proposal to reject the genus Hydrogenomonas: taxonomic implications. Int J Syst Bacteriol 19, 375-390.
6. Denner, E B. M., Kolari, M., Hoornstra, D., Tsitko, I., Kämpfer, P., Busse, H.-J. & Salkinoja-Salonen, M. (2006). Rubellimicrobium thermophilum gen. nov., sp. nov., a red-pigmented, moderately thermophilic bacterium isolated from coloured slime deposits in paper machines. Int J Syst Evol Microbiol 56, 1355-1362.
7. Dong, X.-Z. & Cai, M.-Y. (2001). Determinative Manual for Routine Bacteriology. Beijing: Scientific Press (English translation).
8. Doronina, N. V., Trotsenko, Y. A., Krausova, V. I. & Suzina, N. E. (1998). Paracoccus methylutens sp. nov. - a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst Appl Microbiol 21, 230-236.
9. Doronina, N. V., Trotsénko, Y. A., Kuznetzov, B. B. & Tourova, T. P. (2002). Emended description of Paracoccus kondratievae. Int J Syst Evol Microbiol 52, 679-682.
10. Fujii, K., Satomi, M., Morita, N., Motomura, T., Tanaka, T. & Kikuchi, S. (2003). Novosphingobium tardaugens sp. nov., an oestradiol-degrading bacterium isolated from activated sludge of a sewage treatment plant in Tokyo. Int J Syst Evol Microbiol 53, 47-52.
11. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for general and molecular bacteriology. Washington, D. C.: American Society for Microbiology.
12. Ghosh, W., Mandal, S. & Roy, P. (2006). Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizosphere soil of an Indian tropical leguminous plant. Syst Appl Microbiol 29, 396-403.
13. Hu, Y.-T., Zhou, P.-J., Zhou, Y.-G., Liu, Z.-H. & Liu, S.-J. (2004). Saccharothrix xingjiangensis, sp. nov., a pyrene-degrading actinomycete isolated from Tianchi lake, Xinjiang, China. Int J Syst Evol Microbiol 54, 2091-2094.
14. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram-negative bacteria. J Bacteriol 66, 24-26.
15. Katayama, Y., Hiraishi, A. & Kuraishi, H. (1995). Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotropb, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 141, 1469-1477.
16. Kelly, D. P., Euzéby, J. P., Goodhew, C. F. & Wood, A. P. (2006a). Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections. Int J Syst Evol Microbiol 56, 2445-2500.
17. Kelly, D. P., Rainey, F. A. & Wood, A. P. (2006b). The genus Paracoccus. In The Prokaryotes, A Handbook on the Biology of Bacteria, 3rd edn, vol. 5, pp. 232-249. Edited by M. Dworkin, S. Falkow, E, Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
18. Kim, B.-Y., Weon, H.-Y., Yoo, S.-H., Kwon, S.-W., Cho, Y.-H., Stackebrandt, E. & Go, S.-J. (2006). Paracoccus homiensis sp. nov., isolated from a sea-sand sample. Int J Syst Evol Microbiol 56, 2387-2390.
19. Kumar, S., Tamura, K & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
20. La, H. J., Im, W.-T., Ten, L. N., Kang, M. S., Shin, D. Y. & Lee, S. T. (2005). Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludge blanket (UASB) reactor. Int J Syst Evol Microbiol 55, 1657-1660.
21. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G. & Hirsch, P. (1998). Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int J Syst Bacteriol 48, 1363-1372.
22. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll α production from hypersaline Ekho Lake. Int J Syst Bacteriol 49, 137-147.
23. Labrenz, M., Lawson, P. A., Tindall, B. J., Collins, M. D. & Hirsch, P. (2005). Roseisalinus antarcticus gen. nov., sp. nov., a novel aerobic bacteriochlorophyll α-producing α-proteobacterium isolated from hypersaline Ekho Lake, Antarctica. Int J Syst Evol Microbiol 55, 41-47.
24. Lee, J. H., Kim, Y. S., Choi, T.-J., Lee, W. J. & Kim, Y. T. (2004). Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium. Int J Syst Evol Microbiol 54, 1699-1702.
25. Lipski, A., Reichert, K., Reuter, B., Sproer, C. & Altendorf, K. (1998). Identification of bacterial isolates from biofilters as Paracoccus alkenifer sp. nov, and Paracoccus solventivorans with emended description of Paracoccus solventivorans. Int J Syst Bacteriol 48, 529-536.
26. Liu, X.-Y., Wang, B.-J., Jiang, C.-Y. & Liu, S.-J. (2006). Paracoccus sulfuroxidans sp. nov., a sulfur oxidizer from activated sludge. Int J Syst Evol Microbiol 56, 2693-2695.
27. Ludwig, W., Mittenhuber, G. & Friedrich, C. G. (1993). Transfer of Thiosphaera pantotropha to Paracoccus denitrificans. Int J Syst Bacteriol 43, 363-367.
28. Macián, M. C., Arahal, D. R., Garay, E., Ludwig, W., Schleifer, K. H. & Pujalte, M. J. (2005). Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine α-proteobacterium isolated from Mediterranean sea water. Int J Syst Evol Microbiol 55, 105-110.
29. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
30. Pukall, R., Laroche, M., Kroppenstedt, R. M., Schumann, P., Stackebrandt, E. & Ulber, R. (2003). Paracoccus seriniphilus sp. nov., an L-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa. Int J Syst Evol Microbiol 53, 443-447.
31. Rainey, F. A., Kelly, D. P., Stackebrandt, E., Burghardt, J., Hiraishi, A., Katayama, Y. & Wood, A. P. (1999). A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Int J Syst Bacteriol 49, 645-651.
32. Robertson, L. A. & Kuenen, J. G. (1983). Thiosphaera pantotropha gen. nov. sp. nov., a facultatively anaerobic, facultatively, autotrophic sulphur bacterium. J Gen Microbiol 129, 2847-2855.
33. Siller, H., Rainey, F. A., Stackebrandt, E. & Winter, J. (1996). Isolation and characterization of a new Gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov. Int J Syst Bacteriol 46, 1125-1130.
34. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
35. Tsubokura, A., Yoneda, H. & Mizuta, H. (1999). Paracoccus carotinifaciens sp. nov., a new aerobic Gram-negative astaxanthin-producing bacterium. Int J Syst Bacteriol 49, 277-282.
36. Ventosa, A., Marquez, M. C., Kocur, M. & Tindall, B, J. (1993). Comparative study of "Micrococcus sp." strains CCM 168 and CCM 1405 and members of the genus Salinicoccus. Int J Syst Bacteriol 43, 245-248.
37. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology [English translation of Microbiology (Beijing)] 16, 176-178.
38. Zhang, D., Yang, H., Zhang, W., Huang, Z. & Liu, S.-J. (2003). Rhodocista pekingensis sp. nov., a cyst-forming phototrophic bacterium from a municipal wastewater treatment plant. Int J Syst Evol Microbiol 53, 1111-1114.