Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine α-proteobacterium isolated from Mediterranean sea water

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 1, 2005, Pages 105-110

  Macian M C ^a,b   Arahal, D R ^b   Garay, E ^a,b   Ludwig, W ^c   Schleifer, K H ^c   Pujalte, Maria J ^a,b  

^a UNIVERSITY OF VALENCIA   (Spain)

^b UNIVERSITY OF VALENCIA   (Spain)

^c TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLOROPHYLL A; CYTOSINE; GUANINE; RNA 16S; SEA WATER;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL COLONIZATION; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; GENOTYPE; GRAM NEGATIVE BACTERIUM; MEDITERRANEAN SEA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES IDENTIFICATION; THALASSOBACTER STENOTROPHICUS;

BACTERIOCHLOROPHYLL A; CULTURE MEDIA; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SPAIN;

BACTERIA (MICROORGANISMS); JANNASCHIA; JANNASCHIA HELGOLANDENSIS; NEGIBACTERIA; PROTEOBACTERIA; UNCULTURED ALPHA PROTEOBACTERIUM; VALENCIA;

EID: 13244249871     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63275-0     Document Type: Article

References (30)

1. Allgaier, M., Uphoff, H., Felske, A. & Wagner-Döbler, I. (2003). Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl Environ Microbiol 69, 5051-5059.
2. Baumann, P. & Baumann, L. (1981). The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes. In The Prokaryotes. A Handbook on Habitats, Isolation, and Identification of Bacteria, pp. 1302-1330. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
3. Garrity, G. M., Bell, J. A. & Lilburn, T. G. (2003). Taxonomic outline of the Procaryotes. In Bergey's Manual of Systematic Bacteriology, 2nd edn, release 4.0. New York: Springer. doi: 10.1007/bergeysoutline200310.
4. González, J. M. & Moran, M. A. (1997). Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol 63, 4237-4242.
5. González, J. M., Kiene, R. P. & Moran, M. A. (1999). Transformation of sulfur compounds by an abundant lineage of marine bacteria in the α-subclass of the class Proteobacteria. Appl Environ Microbiol 65, 3810-3819.
6. González, J. M., Simó, R., Massana, R., Covert, J. S., Casamayor, E. O., Pedrós-Alió, C. & Moran, M. A. (2000). Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 66, 4237-4246.
7. González, J. M., Covert, J. S., Whitman, W. B. & 8 other authors (2003). Silicibacter pomeroyi sp. nov. and Roseovarius, nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol 53, 1261-1269.
8. Gosink J. J., Herwig, R. P. & Staley, J. T. (1997). Octadecabacter arcticus gen. nov., sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Syst Appl Microbiol 20, 356-365.
9. Ivanova, E. P., Gorshkova, N. M., Sawabe, T. & 8 other authors (2004). Sulfitobacter delicatus sp. nov. and Sulfitobacter dubius sp. nov., respectively from a starfish (Stellaster equestris) and sea grass (Zostera marina). Int J Syst Evol Microbiol 54, 475-480.
10. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
11. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49 137-147.
12. Labrenz, M., Tindall, B. J., Lawson, P. A., Collins, M. D., Schumann, P. & Hirsch, P. (2000). Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., α-3- Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake. Int J Syst Evol Microbiol 50, 303-313.
13. Lafay, B., Ruimy, R., de Traubenberg, C. R., Breittmayer, V., Gauthier, M. J. & Christen, R. (1995). Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima. Int J Syst Bacteriol 45, 290-296.
14. Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M. & Schleifer, K.-H. (1998). Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19, 554-568.
15. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
16. Macián, M. C., Ludwig, W., Schleifer, K. H., Garay, E. & Pujalte, M. J. (2001). Thalassomonas viridans gen. nov., sp. nov., a novel marine γ-proteobacterium. Int J Syst Evol Microbiol 51, 1283-1289.
17. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
18. Ortigosa, M., Garay, E. & Pujalte, M. J. (1994). Numerical taxonomy of aerobic, Gram-negative bacteria associated with oysters and surrounding seawater of the Mediterranean coast. Syst Appl Microbiol 17, 589-600.
19. Pukall, R., Buntefuß, D., Frühling, A., Rohde, M., Kroppenstedt, R. M., Burghardt, J., Lebaron, P., Bernard, L. & Stackebrandt, E. (1999). Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the α-Proteobacteria. Int J Syst Bacteriol 49, 513-519.
20. Rüger, H.-J. & Höfle, M. G. (1992). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int J Syst Bacteriol 42, 133-143.
21. Ruiz-Ponte, C., Cilia, V., Lambert, C. & Nicolas, J. L. (1998). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int J Syst Bacteriol 48, 537-542.
22. Schaefer, J. K., Goodwin, K. D., McDonald, I. R., Murrell, J. C. & Oremland, R. S. (2002). Leisingera methylohalidivorans gen. nov., sp. nov., a marine methylotroph that grows on methyl bromide. Int J Syst Evol Microbiol 52, 851-859.
23. Shiba, T. (1991). Roseobacter litoralis gen. nov., sp. nov., and Roseobacter denitrificans sp. nov., aerobic pink-pigmented bacteria which contain bacteriochlorophyll a. Syst Appl Microbiol 14, 140-145.
24. Sorokin, D. Y. (1995). Sulfitobacter pontiacus gen. nov., sp. nov. - a new heterotrophic bacterium from the Black Sea, specialized on sulfite oxidation. Microbiology (English translation of Mikrobiologiya) 64, 354-365.
25. Suzuki, T., Muroga, Y., Takahama, M., Shiba, T. & Nishimura, Y. (1999a). Rubrimonas cliftonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-containing bacterium isolated from a saline lake. Int J Syst Bacteriol 49, 201-205.
26. Suzuki, T., Muroga, Y., Takahama, M. & Nishimura, Y. (1999b). Roseivivax halodurans gen. nov., sp. nov. and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. Int J Syst Bacteriol 49, 629-634.
27. Takaichi, S., Furihata, K., Ishidu, J. & Shimada, K. (1991). Carotenoid sulphates from the aerobic photosynthetic bacterium, Erythrobacter longus. Phytochemistry 30, 3411-3415.
28. Uchino, Y., Hirata, A., Yokota, A. & Sugiyama, J. (1998). Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44, 201-210.
29. Wagner-Döbler, I., Rheims, H., Felske, A., Pukall, R. & Tindall, B. J. (2003). Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea. Int J Syst Evol Microbiol 53, 731-738.
30. Woese, C. R., Stackebrandt, E., Weisburg, W. G. & 8 other authors (1984). The phylogeny of purple bacteria: the alpha subdivision. Syst Appl Microbiol 5, 315-326.