Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant

Systematic and Applied Microbiology

Volumn 29, Issue 5, 2006, Pages 396-403

  Ghosh, Wriddhiman ^a   Mandal, Sukhendu ^a   Roy, Pradosh ^a  

^a BOSE INSTITUTE   (India)

Author keywords

Chemolithoautotrophic paracocci; Leguminous rhizosphere; Paracoccus bengalensis sp. nov.; Sulfur oxidation

Indexed keywords

FATTY ACID; RIBOSOME RNA; SULFUR;

ARTICLE; AUTOTROPHY; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CLITORIA; CONTROLLED STUDY; DNA HYBRIDIZATION; FOREST; GENE SEQUENCE; GENE STRUCTURE; INDIA; LEGUME; NONHUMAN; OXIDATION KINETICS; PARACOCCUS; PARACOCCUS BENGALENSIS; PRIORITY JOURNAL; RHIZOSPHERE; SEQUENCE HOMOLOGY; SPECIES DIVERSITY; WASTE;

CLITORIA TERNATEA; FABACEAE; PAPILIONOIDEAE; PARACOCCUS BENGALENSIS; PARACOCCUS VERSUTUS;

EID: 33745684902     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2005.10.004     Document Type: Article

References (26)

1. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72 (1976) 248-254
2. Daneshvar M.I., Hollis D.G., Weyant R.S., Steigerwalt A.G., Whitney A.M., et al. Paracoccus yeeii sp. nov. (Formerly CDC Group EO-2), a novel bacterial species associated with human infection. J. Clin. Microbiol. 41 (2003) 1289-1294
3. Deb C., Stackebrandt E., Pradella S., Saha A., and Roy P. Phylogenetically diverse new sulfur chemolithotrophs of alpha-Proteobacteria isolated from Indian soils. Curr. Microbiol. 48 (2004) 452-458
4. Ezaki T., Hashimoto Y., Takeuchi N., Yamamoto H., Liu S.L., Miura H., Matsui K., and Yabuuchi E. Simple genetic method to identify viridans group streptococci by colorimetric dot hybridization in microdilution wells. J. Clin. Microbiol. 26 (1988) 1708-1713
5. Friedrich C.G. Physiology and genetics of sulfur-oxidizing bacteria. Adv. Microb. Physiol. 39 (1998) 235-289
6. Friederich C.G., Rother D., Bardischewsky F., Quentmeier A., and Fischer J. Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?. Appl. Environ. Microbiol. 67 (2001) 2873-2882
7. Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. Methods for General and Molecular Bacteriology (1994), American Society for Microbiology, Washington, DC
8. Jordan S.L., McDonald I.R., Kraczkiewicz-Dowjat A.J., Kelly D.P., Rainey F.A., Murrell J.C., and Wood A.P. Autotrophic growth on carbon disulfide is a property of novel strains of Paracoccus denitrificans. Arch. Microbiol. 168 (1997) 225-236
9. Jukes T.H., and Cantor C.R. Evolution of protein molecules. In: Munro H.N. (Ed). Mammalian Protein Metabolism vol. 3 (1969), Academic Press, New York 21-132
10. Katayama Y., Hiraishi A., and Kuraishi H. Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 141 (1995) 1469-1477
11. Kelly D.P., and Wood A.P. Synthesis and determination of thiosulfate and polythionates. Methods Enzymol. 243 (1994) 475-501
12. Kelly D.P., McDonald I.R., and Wood A.P. Proposal for the reclassification of Thiobacillus novellas as Starkeya novella gen. nov., comb. nov. in the α-subclass of the Proteobacteria. Int. J. Syst. Evol. Microbiol. 50 (2000) 1797-1802
13. Labrenz M., Tindall B.J., Lawson P.A., Collins M.D., Schumann P., and Hirsch P. Staleya guttiformis gen. nov., sp. nov., and Sulfitobacter brevis sp. nov., α-3-Proteobacteria from hypersaline, heliothermal and meromictic Antarctic Ekho Lake. Int. J. Syst. Evol. Microbiol. 50 (2000) 303-313
14. Laëmmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
15. Lipski A., Reichert K., Reuter B., Sproer C., and Altendorf K. Identification of bacterial isolates from biofilters as Paracoccus alkenifer sp. nov. and Paracoccus solventivorans with emended description of Paracoccus solventivorans. Int. J. Syst. Bacteriol. 48 (1998) 529-536
16. Ludwig W., Mittenhueber G., and Friedrich C.G. Transfer of Thiosphaera pantotropha to Paracoccus denitrificans. Int. J. Syst. Bacteriol. 43 (1993) 363-367
17. Mesbah M., Premachandran U., and Whitman W.B. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39 (1989) 159-167
18. Mukhopadhyaya P.N., Deb C., Lahiri C., and Roy P. A soxA gene, encoding a diheme cytochrome c, and a sox locus, essential for sulfur oxidation in a new sulfur lithotrophic bacterium. J. Bacteriol. 182 (2000) 4278-4287
19. Pearson W.R., and Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85 (1988) 2444-2448
20. Rainey F.A., Kelly D.P., Stackebrandt E., Burghardt J., Hiraishi A., Katayama Y., and Wood A.P. A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov. Int. J. Syst. Bacteriol. 49 (1999) 645-651
21. Robertson L.A., and Kuenen J.G. Thiosphaera pantotropha gen. nov. sp. nov., a facultatively anaerobic, facultatively autotrophic sulphur bacterium. J. Gen. Microbiol. 129 (1983) 2847-2855
22. Sneath P.H.A., and Sokal R.R. Numerical Taxonomy (1973), W.H. Freeman, San Francisco
23. Stackebrandt E., and Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
24. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W-improving the sensitivity of progressive multiple sequence alignment through sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
25. Vishniac W., and Santer M. The thiobacilli. Bacteriol. Rev. 21 (1957) 195-213
26. Wayne L.G., Brenner D.J., and Colwell R.R. 9 other authors, Report of the ad hoc committee on reconciliation of the approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37 (1987) 463-464