Identification of S2-T A63: A cDNA fragment corresponding to a gene differentially expressed in a Cr-tolerant strain of the unicellular green alga Scenedesmus acutus

Aquatic Toxicology

Volumn 86, Issue 4, 2008, Pages 495-507

  Torelli, Anna ^a   Marieschi, Matteo ^a   Castagnoli, Barbara ^a   Zanni, Corrado ^a   Gorbi, Gessica ^a   Corradi, Maria Grazia ^a  

^a UNIVERSITY OF PARMA   (Italy)

Author keywords

Cr tolerance; Fasciclin domain; Green algae; Heavy metals; mRNA differential display; Scenedesmus acutus

Indexed keywords

CHROMIUM; DNA FRAGMENT; GENE PRODUCT; RNA; ALGAL PROTEIN; COMPLEMENTARY DNA; MESSENGER RNA;

ADHESION; CHROMIUM; COMPARATIVE STUDY; CYTOLOGY; DNA; GENE EXPRESSION; GREEN ALGA; IDENTIFICATION METHOD; TOLERANCE;

AMPLICON; ARTICLE; CONTROLLED STUDY; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE OVEREXPRESSION; GENETIC TRANSCRIPTION; GREEN ALGA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; RNA EXTRACTION; RNA TRANSLATION; SCENEDESMUS ACUTUS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; UPREGULATION; WILD TYPE; AMINO ACID SEQUENCE; BIOSYNTHESIS; DRUG EFFECT; DRUG TOLERANCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR GENETICS; PHYLOGENY; SCENEDESMUS; SEQUENCE ALIGNMENT; WATER POLLUTANT;

CHLOROPHYTA; ECHINODERMATA; HEXAPODA; MAMMALIA; SCENEDESMUS ACUTUS;

ALGAL PROTEINS; AMINO ACID SEQUENCE; BASE SEQUENCE; CHROMIUM; DNA, COMPLEMENTARY; DRUG TOLERANCE; GENE EXPRESSION; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, MESSENGER; SCENEDESMUS; SEQUENCE ALIGNMENT; WATER POLLUTANTS, CHEMICAL;

EID: 40249105787     PISSN: 0166445X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquatox.2007.12.010     Document Type: Article

References (82)

1. Allard B., and Tazi A. Influence of growth status on composition of extra-cellular polysaccharides from two Chlamydomonas species. Phytochemistry 32 1 (1993) 41-47
2. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J.H., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
3. Alvarez A.H., Moreno-Sánchez R., and Cervantes C. Chromate efflux by means of the ChrA chromate resistance protein from Pseudomonas aeruginosa. J. Bacteriol. 181 (1997) 7398-7400
4. Ansari-Lari M.A., Jones S.N., Timms K.M., and Gibbs R.A. Improved ligation-anchored PCR strategy for identification of 5′ ends of transcripts. BioTechniques 21 1 (1996) 34-38
5. Callard D., Lescure B., and Mazzolini L. A method for the elimination of false positives generated by the mRNA differential display technique. Biotechniques 16 (1994) 1096-1102
6. Campos J., Martínez-Pacheco M., and Cervantes C. Hexavalent chromium reduction by a chromate-resistant Bacillus sp. strain. Antonie van Leeuwenhoek 68 (1995) 203-208
7. Cervantes C., Campos-Garcìa J., Devars S., Gutiérrez-Corona F., Loza-Tavera H., Torres-Guzmàn J.C., and Moreno-Sànchez R. Interactions of chromium with microorganisms and plants. FEMS Microbiol. Rev. 25 (2001) 335-347
8. Chatterjee J., and Chatterjee C. Phytotoxicity of cobalt, chromium and copper in cauliflower. Environ. Pollut. 109 (2000) 69-74
9. Chenna R., Sugawara H., Koike T., Lopez R., Gibson T.J., Higgins D.G., and Thompson J.D. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31 13 (2003) 3497-3500
10. Clout N.J., Tisi D., and Hohenester E. Novel fold revealed by the structure of a FAS1 domain pair from the insect cell adhesion molecule Fasciclin I. Structure 11 (2003) 197-203
11. Corradi M.G., Gorbi G., Ricci A., Torelli A., and Bassi M. Chromium-induced sexual reproduction give rise to a Cr-tolerant progeny in Scenedesmus acutus. Ecotoxicol. Environ. Saf. 32 (1995) 12-18
12. Corradi M.G., Gorbi G., Morsi Abd-El-Monem H., Torelli A., and Bassi M. Exudates from the wild type and a Cr-tolerant strain of Scenedesmus acutus influence differently Cr(VI) toxicity to algae. Chemosphere 37 (1998) 3019-3025
13. Dahiya P., Findlay K., Roberts K., and McCann M.C. A fasciclin-domain containing gene, ZeFLA11, is expressed exclusively in xylem elements that have reticulate wall thickenings in the stem vascular system of Zinnia elegans cv Envy. Planta 223 (2006) 1281-1291
14. Davis T.A., Volesky B., and Mucci A. A review of the biochemistry of heavy metal biosorption by brown algae. Water Res. 37 (2003) 4311-4330
15. Dean C., Tamaki S., Dunsmuir P., Favreau M., Katayama C., Dooner H., and Bedrook J. mRNA transcripts of several plant genes are polyadenilated at multiple sites in vivo. Nucleic Acids Res. 14 5 (1986) 2229-2240
16. De Filippis L.F., and Pallaghy C.K. Heavy metals: sources and biological effects. In: Rai L.C., Gaur J.P., and Soeder C.J. (Eds). Advances in Limnology Series: Algae and Water Pollution (1994), E. Scheizerbartsche Press, Stuttgart 31-77
17. Deng L., Wang H., and Deng N. Photoreduction of chromium(VI) in the presence of algae, Chlorella vulgaris. J. Hazard. Mater. B 138 (2006) 288-292
18. Dixit V., Pandey V., and Shyam R. Chromium ions inactivate electron transport and enhance superoxide generation in vivo in pea (Pisum sativum L. cv: Azad) root mitochondria. Plant Cell Env. 25 (2002) 687-693
19. Elkins T., Hortsh M., Bieber A.J., Snow P.M., and Goodman C.S. Drosophila fasciclin I is a novel homophylic adhesion molecule that along with fasciclin III can mediate cell sorting. J. Cell Biol. 110 (1990) 1825-1832
20. Engelhardt H., and Peters J. Structural research on surface layers: a focus on stability, surface layer homology domains, and surface layer-cell wall interactions. J. Struct. Biol. 124 (1998) 276-302
21. Gaspar Y.M., Johnson K.L., McKenna J.A., Bacic A., and Schultz C.J. The complex structures of arabinogalactan-proteins and a journey towards a function. Plant Mol. Biol. 47 (2001) 161-176
22. Gorbi G., and Corradi M.G. Chromium toxicity on two linked trophic levels I. Effects of contaminated algae on Daphnia magna. Ecotoxicol. Environ. Saf. 25 (1993) 64-71
23. Gorbi G., Corradi M.G., Torelli A., and Bassi M. Comparison between a normal and a Cr-tolerant strain of Scenedesmus acutus as a food source to Daphnia magna. Ecotoxicol. Environ. Saf. 35 (1996) 109-111
24. Gorbi G., Corradi M.G., Invidia M., and Bassi M. Light intensity influences chromium bioaccumulation and toxicity in Scenedesmus acutus (Chlorophyceae). Ecotoxicol. Environ. Saf. 48 (2001) 36-42
25. Gorbi G., Corradi M.G., Invidia M., Rivara L., and Bassi M. Is Cr(VI) toxicity to Daphnia magna modified by food availability or algal exudates? The hypothesis of a specific chromium/algae/exudates interaction. Water Res. 36 (2002) 1917-1926
26. Gorbi G., Torricelli E., Pawlik-Skowrońska B., Sanità di Toppi L., Zanni C., and Corradi M.G. Differential responses to Cr(VI)-induced oxidative stress between Cr-tolerant and wild-type strains of Scenedesmus acutus (Chlorophyceae). Aquat. Toxicol. 79 (2006) 132-139
27. Gorbi G., Zanni C., and Corradi M.G. Sulfur starvation and chromium tolerance in Scenedesmus acutus: a possible link between metal tolerance and the regulation of sulfur uptake/assimilation processes. Aquat. Toxicol. 84 (2007) 457-464
28. Han X., Wong Y.S., Wong M.H., and Tam N.F.Y. Biosorption and bioreduction of Cr(VI) by a microalgal isolate, Chlorella miniata. J. Hazard. Mater. 146 (2007) 65-72
29. Hörcsik Z., Oláh V., Balogh A., Mészáros I., Simon L., and Lakatos G. Effect of chromium(VI) on growth, element and photosynthetic pigment composition of Chlorella pyrenoidosa. Acta Biologica Szegediensis 50 1/2 (2006) 19-23
30. Hortsch M., and Goodman C.S. Drosophila fasciclin I, a neural cell adhesion molecule, has a phosphatidylinositol lipid membrane anchor that is developmentally regulated. J. Biol. Chem. 265 (1990) 15104-15109
31. Huber O., and Sumper M. Algal-CAMs: isoforms of a cell adhesion molecules in embryos of the alga Volvox with homology to Drosophyla fasciclin I. EMBO J. 13 (1994) 4212-4222
32. Hunt A.G. Messenger RNA 3′ end formation in plants. Annu. Rev. Plant. Physiol. Plant Mol. Biol. 45 (1994) 47-60
33. Iyer A., Mody K., and Jha B. Accumulation of hexavalent chromium by anexopolysaccharide producing marine Enterobacter cloaceae. Marine Poll Bull. 49 (2004) 974-977
34. Johnson K.L., Jones B.J., Bacic A., and Schultz C.J. The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules. Plant Physiol. 133 (2003) 1911-1925
35. Kaplan D., Christiaen D., and Arad S. Chelating properties of extracellular polysaccharides from Chlorella spp. Appl. Environ. Microbiol. 53 12 (1987) 2953-2956
36. Kawamoto T., Noshiro M., Shen M., Nakamasu K., Hashimoto K., Kawashima-Ohya Y., Gotoh O., and Kato Y. Structural and phylogenetic analyses of RGD-CAP/βig-h3, a fasciclin-like adhesion protein expressed in chick chondrocytes. Biochim. Biophys. Acta 1395 (1998) 288-292
37. Kim J.-E., Kim S.-J., Lee B.-H., Park R.-W., Kim K.-S., and Kim I.-S. Identification of motifs for cell adhesion within the repeated domains of transforming growth factor-β-induced gene, βig-h3. J. Biol. Chem. 275 (2000) 30907-30915
38. Kim J.-E., Jeong H.-W., Nam J.-O., Lee B.-H., Choi J.-Y., Park R.-W., Park J.Y., and Kim I.-S. identification of motifs in the fasciclin domains of the transforming growth factor-β-induced matrix protein βig-h3 that interact with the ανβ5 integrin. J. Biol. Chem. 277 (2002) 46159-46165
39. Liang P., and Pardee B.A. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257 (1992) 967-971
40. Liang P., Averboukh L., and Pardee B.A. Distribution and cloning of eucaryotic mRNAs by means of differential display: refinements and optimization. Nucleic Acids Res. 21 (1993) 3269-3275
41. Liao Y.-C., Drossard J., Nahring J.M., and Fischer R. Isolation of RNA from plant cell suspension cultures and calli by sonication. Biotechniques 23 (1997) 996-1000
42. Lovley D.R., and Phillips E.J.P. Reduction of chromate by Desulfovibrio vulgaris and its c3 cytochrome. Appl. Environ. Microbiol. 60 (1994) 726-728
43. Lytle C.M., Lytle F.W., Yang N., Qian J.H., Hansen D., Zayed A., and Terry N. Reduction of Cr(VI) to Cr(III) by wetland plants: potential for in situ heavy metal detoxification. Environ. Sci. Technol. 32 (1998) 3087-3093
44. Mallick N., and Rai L.C. Physiological responses of non-vascular plants to heavy metals. In: Prasad M.N.V., and Strzałka K. (Eds). Physiology and Biochemistry of Metal Toxicity and Tolerance in Plants (2002), Kluwer Academic Publishers, Dordrecht, The Netherlands 111-147
45. Marchler-Bauer A., and Bryant S.H. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32 (2004) 327-331
46. Marzluf G.A. Genetic and metabolic controls for sulfate metabolism in Neurospora crassa: isolation and study of chromate-resistant and sulfate transport-negative mutants. J. Bacteriol. 102 (1970) 716-721
47. McAllister L., Rhem E.J., Goodman C.S., and Zinn K. Alternative splicing of micro-exons creates multiple forms of the insect cell adhesion molecule Fasciclin I. J. Neurosci. 12 (1992) 895-905
48. Morsi Abd-El-Monem H., Corradi M.G., and Gorbi G. Toxicity of copper and zinc to two strains of Scenedesmus acutus having different sensitivity to chromium. Environ. Exp. Bot. 40 (1998) 59-66
49. Nakai K., and Horton P. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem. Sci. 24 (1999) 34-36
50. Nies D.H., Koch S., Wachi S., Peitzsch N., and Saier Jr. M.H. CHR, a novel family of prokaryotic proton motive force-driven transporters probably containing chromate/sulphate antiporters. J. Bacteriol. 180 (1998) 5799-5802
51. Ohtake H., and Silver S. Bacterial detoxification of toxic chromate. In: Chaudhry G.R. (Ed). Biological Degradation and Bioremediation of Toxic Chemicals (1994), Dioscorides, Portland, OR 403-415
52. Okamura H., and Aoyama I. Interactive toxic effect and distribution of heavy metals in phytoplankton. Environ. Toxicol. Water Qual. 9 (1994) 7-15
53. Paietta J.V. Molecular cloning and analysis of the scon-2 negative regulatory gene of Neurospora crassa. Mol. Cell. Biol. 10 (1990) 5207-5214
54. Paulsrud P., and Lindblad P. Fasciclin domain proteins are present in Nostoc symbionts of lichens. Appl. Environ. Microbiol. 68 (2002) 2036-2039
55. Perales-Vela H.V., Peña Castro J.M., and Cañizares-Villanueva R.O. Heavy metal detoxification in eukaryotic microalgae. Chemosphere 64 (2006) 1-10
56. Pérez-Castiñeira J.R., Prieto J.L., Gonzáles-Arroyo J.G., and Vega J.M. Kinetic properties of sulfate uptakes in two types of eukaryotic green microalgae. J. Plant Physiol. 153 (1998) 324-331
57. Petrucco S., Bolchi A., Foroni C., Percudani R., Rossi G.L., and Ottonello S. A maize gene encoding an NADPH binding enzyme highly homologous to isoflavone reductase is activated in response to sulfur starvation. Plant Cell 8 (1996) 69-80
58. Ramírez-Ramírez R., Calvo-Méndez C., Avila-Rodríguez M., Lappe P., Ulloa M., Vázquez-Juárez R., and Gutiérrez-Corona J.F. Cr(VI) reduction in a chromate-resistant strain of Candida maltosa isolated from the leather industry. Antonie van Leeuwenhoek 85 (2004) 63-68
59. Rawe I.M., Zhan Q., Burrows R., Bennet K., and Cintron C. Beta-ig. Molecular cloning and in situ hybridization in corneal tissues. Invest. Ophtalmol. Visual Sci. 38 (1997) 893-900
60. Reynolds W.S., Schwarz J.A., and Weis V.M. Symbiosis-enhanced gene expression in cnidarian-algal associations: cloning and characterization of a cDNA, sym32, encoding a possible cell adhesion protein. Comp. Biochem. Physiol. 126 (2000) 33-34
61. Rubinelli P., Siripornadulsil S., Gao-Rubinelli F., and Sayre R.T. Cadmium- and iron-stress-inducible gene expression in the green alga Chlamydomonas reinhardtii: evidence for H43 protein function in iron assimilation. Planta 215 (2002) 1-13
62. Samantaray S., Rout G.R., and Das P. Studies on differential tolerance of mungbean cultivars to metalliferous minewastes. Agribiol. Res. 52 (1999) 193-201
63. Samantaray S., Rout G.R., and Das P. Induction, selection and characterization of Cr and Ni-tolerant cell lines of Echinocloa colona (L) in vitro. J. Plant Physiol. 158 (2001) 1281-1290
64. Sambrook J., Fritsch E.F., and Maniatis T. Electrophoresis of RNA through gels containing formaldehyde. Molecular Cloning a laboratory manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY pp. 7.43-7.45
65. Sambrook J., Fritsch E.F., and Maniatis T. Staining RNA before and after transfer to nitrocellulose filters. Molecular Cloning a laboratory manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY p. 7.51
66. Sambrook J., Fritsch E.F., and Maniatis T. Analysis of genomic DNA by Southern Hybridization. Molecular Cloning, a laboratory manual. Molecular Cloning, a laboratory manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY pp. 9.31-9.45
67. Shanker A.K., and Pathmanabhan G. Speciation dependent antioxidative response in roots and leaves of Sorghum (Sorghum bicolor (L) Moench cv CO27) under Cr(III) and Cr(VI) stress. Plant Soil 265 (2004) 141-151
68. Shanker A.K., Djanaguiraman M., Sudhagar R., Jayaram R., and Pathmanabhan G. Expression of metallothionein 3 (MT3) like protein mRNA in Sorghum cultivars under chromium(VI) stress. Curr. Sci. India 86 7 (2004) 901-902
69. Schultz C.J., Rumsewicz M.P., Johnson K.L., Jones B.J., Gaspar Y.M., and Bacic A. Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case. Plant Physiol. 129 (2002) 1448-1463
70. Talarico L. Fine structure and X-ray microanalysis of a red macrophyte cultured under cadmium stress. Environ. Pollut. 120 (2002) 813-821
71. Thacker U., and Madamwar D. Reduction of toxic chromium and partial localization of chromium reductase activity in bacterial isolate DM1. World J. Microb. Biot. 21 (2005) 891-899
72. Tien C.-J., Sigee D.C., and White K.N. Characterization of surface sugars on algal cells with fluorescein isothiocyanate-conjugated lectins. Protoplasma 225 (2005) 225-233
73. Torelli A., Soragni E., Borinato M., and Branca C. The expression of LESK1 morphogenetic marker along the tomato hypocotyls axis is linked to a position-dependent competence for shoot regeneration. Plant Sci 166 1 (2004) 179-190
74. Torricelli E., Gorbi G., Pawlik-Skowrońska B., Sanità di Toppi L., and Corradi M.G. Cadmium tolerance, cysteine and thiol peptide levels in wild type and chromium-tolerant strains of Scenedesmus acutus (Chlorophyceae). Aquat. Toxicol. 68 (2004) 315-323
75. US Environmental Protection Agency. Algal Assay Procedure Bottle Test. National Eutrophication Research Program (1971), Pacific Northwest Environmental Research Laboratory, Corvallis, OR
76. van der Flier A., and Sonnenberg A. Function and interactions of integrins. Cell Tissue Res. 305 (2001) 285-298
77. Wallace A., Soufi S.M., Cha J.W., and Romney E.M. Some effects of chromium toxicity on bush bean plants grown in soil. Plant Soil 44 (1976) 471-473
78. Wang P., Mori T., Komori K., Sasatsu K., Toda K., and Ohtake H. Isolation and characterization of an Enterobacter cloacae strain that reduces hexavalent chromium under anaerobic conditions. Appl. Environ. Microbiol. 55 (1989) 1665-1669
79. Wang P., Mori T., Toda K., and Ohtake H. Membrane-associated chromate reductase activity from Enterobacter cloacae. J. Bacteriol. 172 (1990) 1670-1672
80. Weckesser J., Hofman K., Jurgens U.J., Whitton B.A., and Raffelsberger B. Isolation and chemical analysis of the sheats of the filamentous cyanobacteria Calothrix parietina and C. scopulorum. J. Gen. Microbiol. 134 (1988) 629-634
81. Wilkinson J.Q., and Crawford N.M. Identification of the Arabidopsis CHL3 gene as the nitrate reductase structural gene NIA2. Plant Cell 3 (1991) 461-471
82. Zinn K., McAllister L., and Goodman C.S. Sequence analysis and neuronal expression of fasciclin I in grasshopper and Drosophyla. Cell 53 (1988) 577-587