The complex structures of arabinogalactan-proteins and the journey towards understanding function

Plant Molecular Biology

Volumn 47, Issue 1-2, 2001, Pages 161-176

  Gaspar, Yolanda ^a   Johnson, Kim L ^a   Mckenna, James A ^a   Bacic, Antony ^a   Schultz, Carolyn J ^a,b  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

Arabidopsis; Arabinogalactan protein; Cell wall; Fasciclin; Glycosylphosphatidylinositol anchor; Hydroxyproline

Indexed keywords

ARABINOGALACTAN PROTEIN; CELL DEATH; GENETIC MODIFICATION; GENETIC TRANSCRIPTION; GLYCOSYLPHOSPHATIDYLINOSITOL; GLYCOSYLTRANSFERASE; MOLECULAR BIOLOGY; PROCOLLAGEN PROLINE 2 OXOGLUTARATE 4 DIOXYGENASE; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEINASE;

CELLS; DNA; ENZYME KINETICS; GENES; SYNTHESIS (CHEMICAL); YEAST;

CELL DEATH;

PLANTS (BOTANY);

AMINO ACID SEQUENCE; ARABIDOPSIS; CELL WALL; GLYCOSYLATION; GLYCOSYLPHOSPHATIDYLINOSITOLS; MOLECULAR SEQUENCE DATA; MUCOPROTEINS; MUTATION; PLANT PROTEINS; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; ARABIDOPSIS; EMBRYOPHYTA;

EID: 0034863410     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1010683432529     Document Type: Review

References (142)

1. WAKs: Cell wall-associated kinases linking the cytoplasm to the extracellular matrix
2. Fine structure of the arabinogalactan-protein from Lolium multiflorum
3. Structure and function of plant cell walls
4. Structural classes of arabinogalactan-proteins
5. Deletion of GP17, a yeast gene required for addition of a side chain to the glycosylphosphatidylinositol (GPI) core structure, affects GPI protein transport, remodeling, and cell wall integrity
6. Yeast Gpi8p is essential for GPI anchor attachment onto proteins
7. Functional genomics in plants
8. Sequence-function relationships of prokaryotic and eukaryotic galactosyltransferases
9. Virus-induced silencing of a plant cellulose synthase gene
10. Partial purification and characterization of a (glycosyl) inositol phospholipid-specific phospholipase-C from peanut
11. Structural models of primary cell walls in flowering plants: Consistency of molecular structure with the physical properties of the walls during growth
12. The primary glycosylation defect in class-E Thy-1-negative mutant mouse lymphoma cells is an inability to synthesize dolichol-P-mannose
13. A defect in glycosylphosphatidylinositol (GPI) transamidase activity in mutant K cells is responsible for their inability to display GPI surface proteins
14. A floral transmitting tissue-specific glycoprotein attracts pollen tubes and stimulates their growth
15. Evidence for repeating sub-units in the molecular structure of the acidic arabinogalactan from rapeseed (Brassica campestris)
16. Form and function of arabinogalactans and arabinogalactan-proteins
17. Two different types of lipid moieties are present in glycophosphoinositol-anchored membrane proteins of Saccharomyces cerevisiae
18. Correction of a defect in mammalian GPI anchor biosynthesis by a transfected yeast gene
19. Is there a role for GPIs in yeast cell-wall assembly?
20. Novel vascular cell-specific genes whose expression is regulated temporally and spatially during vascular system development
21. A basic chitinase-like protein secreted by embryogenic tissues of Pinus caribaea acts on arabinogalactan proteins extracted from the same cell lines
22. Cloning, expression, and characterization of a root-form phosphoenolpyruvate carboxylase from Zen mays: Comparison with the C4-form enzyme
23. Arabinogalactan-proteins: A class of extracellular matrix proteoglycans involved in plant growth and development
24. Colorimetric method for the determination of sugars and related substances
25. Automated annotation of GPI anchor sites: Case study C. elegans
26. Drosophila fasciclin I is a novel homophilic adhesion molecule that along with fasciclin III can mediate cell sorting
27. An intramolecular linkage involving isodityrosine in extensin
28. Structures of glycosylphosphatidylinositol membrane anchors from Saccharomyces cerevisiae
29. Chemical and physical properties of an arabinogalactan-peptide from wheat endosperm
30. Arabinogalactan-proteins: Structure, biosynthesis and function
31. Characterization of a yeast nuclear gene, AEP2, required for accumulation of mitochondrial mRNA encoding subunit 9 of the ATP synthase
32. YLL031c belongs to a novel family of membrane proteins involved in the transfer of ethanolaminephosphate onto the core structure of glycosylphosphatidylinositol anchors in yeast
33. Structural analysis of the carbohydrate moiety of arabinogalactan-proteins from stigmas and styles of Nicotiana alata
34. Immunolocalization of LeAGP-1, a modular arabinogalactan-protein, reveals its developmentally regulated expression in tomato
35. MCD4 encodes a conserved endoplasmic reticulum membrane protein essential for glycosylphosphatidylinositol anchor synthesis in yeast
36. Arabinogalactan protein and wall-associated kinase in a plasmalemmal reticulum with specialized verticles
37. NaAGP4 is an arabinogalactan-protein whose expression is suppressed by wounding and fungal infection in Nicotiana alata
38. Gum arabic glycoprotein contains glycomodules of both extensin and arabinogalactan-glycoproteins
39. Yeast Gaalp is required for attachment of a completed GPI anchor onto proteins
40. Microarrays: Determining the balance of cellular transcription
41. An improved procedure for the methylation analysis of oligosaccharides and polysaccharides
42. A cluster of five cell wall-associated receptor kinase genes, Wakl-5, are expressed in specific organs of Arabidopsis
43. Glycoside hydrolases and glycosyltransferases. Families, modules, and implications for genomics
44. dpy-18 encodes an α-subunit of prolyl-4-hydroxylase in Caenorhabditis elegans
45. Molecular cloning of human homolog of yeast GAAl which is required for attachment of glycosylphosphatidylinositols to proteins
46. A comparative analysis of the plant cellulose synthase (CesA) gene family
47. Pig-n, a mammalian homologue of yeast Mcd4p, is involved in transferring phosphoethanolamine to the first mannose of the glycosylphosphatidylinositol
48. Requirement of PIG-F and PIG-O for transferring phosphoethanolamine to the third mannose in glycosylphosphatidylinositol
49. Glycosyl-phosphatidylinositol anchored membrane enzymes
50. Algal-CAMs: Isoforms of a cell adhesion molecule in embryos of the alga Volvox with homology to Drosophila fasciclin I
51. Cloning of a human gene, PIG-F, a component of glycosylphosphatidylinositol anchor biosynthesis, by a novel expression cloning strategy
52. PIG-C, one of the three human genes involved in the first step of glycosylphosphatidylinositol biosynthesis is a homologue of Saccharomyces cerevisiae GPI2
53. Matrix proteoglycans: From molecular design to cellular function
54. Structural characterization of genes corresponding to cotton fiber mRNA, E6: Reduced E6 protein in transgenic plants by antisense gene
55. Gene expression in cotton (Gossypium hirsutum L.) fiber: Cloning of the mRNAs
56. Correction of the class H defect in glycosylphosphatidylinositol anchor biosynthesis in Ltk- cells by a human cDNA clone
57. Glycosylphosphatidylinositol-anchor-deficient mice: Implications for clonal dominance of mutant cells in paroxysmal nocturnal hemoglobinuria
58. Extensin: Repetitive motifs, functional sites, post-translational codes, and phylogeny
59. Effect of exo-β-D-(1→3)-galactanase digestion on complement activating activity of neutral arabinogalactan unit in a pectic arabinogalactan from roots of Angelica acutiloba kitagawa
60. The use of antibodies to study the architecture and developmental regulation of plant cell walls
61. Developmentally regulated epitopes of cell surface arabinogalactan proteins and their relation to root tissue pattern formation
62. Plasma membrane-cell wall contacts
63. Architecture of the yeast cell wall
64. Glycosyl phosphatidylinositol anchor
65. Arabinogalactan-protein epitopes in somatic embryogenesis of Daucas carota L.
66. Arabinogalactan proteins and plant differentiation
67. T-DNA as an insertional mutagen in Arabidopsis
68. A conditionally lethal yeast mutant blocked at the first step in glycosyl phosphatidylinositol anchor synthesis
69. Temperature-sensitive yeast GPI anchoring mutants gpi2 and gpi3 are defective in the synthesis of N-acetylglucosaminyl phosphatidylinositol
70. Gpil, a Saccharomyces cerevisiae protein that participates in the first step in glycosylphosphatidylinositol anchor synthesis
71. Cloning and developmental/stress-regulated expression of a gene encoding a tomato arabinogalactan protein
72. A style-specific 120-kDa glycoprotein enters pollen tubes of Nicotiana alata in vivo
73. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR
74. Xylem-specific gene expression in loblolly pine
75. Purification and cloning of an arabinogalactan-protein from xylem of loblolly pine
76. A pathway for cell wall anchorage of Saccharomyces cerevisiae α-agglutinin
77. Weeding out the genes: The Arabidopsis genome project
78. Molecular cloning of cDNAs encoding the protein backbones of arabinogalactan-proteins from the filtrate of suspension-cultured cells of Pyrus communis and Nicotiana alata
79. Soluble signals from cells identified at the cell wall establish a developmental pathway in carrot
80. Sequence-based identification of T-DNA insertion mutations in Arabidopsis: Actin mutants act2-l and act4-l
81. Isolation, characterization and chemical synthesis of a galactosyl-hydroxyproline linkage compound from wheat endosperm arabinogalactan-peptide
82. Function search in a large transcription factor gene family in Arabidopsis: Assessing the potential of reverse genetics to identify insertional mutations in R2R3 MYB genes
83. Cloning of PIG-A, a component in the early step of GPI-anchor biosynthesis
84. Intracellular transport of GPI-anchored proteins
85. PSORT: A program for detecting sorting signals in proteins and predicting their subcellular localization
86. Expression cloning of PIG-L, a candidate N-acetylglucosaminylphosphatidylinositol deacetylase
87. The division abnormally delayed (dally) gene: A putative integral membrane proteoglycan required for cell division patterning during postembryonic development of the nervous system in Drosophila
88. Identification of T-DNA tagged Arabidopsis mutants that are resistant to transformation by Agrobacterium
89. Proteoglycans and related components in plant cells
90. Cloning and sequencing of the yeast gene for dolichol phosphate mannose synthase, an essential protein
91. Structure of the glycosylphosphatidylinositol membrane anchor of an arabinogalactan-protein from Pyrus communis suspension-cultured cells
92. Analysis of flanking sequences from Dissociation insertion lines: A database for reverse genetics in Arabidopsis
93. Identification of a novel contactin-associated transmembrane receptor with multiple domains implicated in protein-protein interactions
94. Developmental regulation of a plasma membrane arabinogalactan protein epitope in oilseed rape flowers
95. Characterization of a cDNA encoding the protein moiety of a putative arabinogalactan protein from Lycopersicon esculentum
96. Larch arabinogalactan for hepatic drug delivery: Isolation and characterization of a 9 kDa arabinogalactan fragment
97. Characterization of abnormal free glycosylphosphatidylinositols accumulating in mutant lymphoma cells of classes B, E, F and H
98. Gum arabic glycoprotein is a twisted hairy rope: A new model based on O-galactosylhydroxyproline as the polysaccharide attachment site
99. Molecular analysis of two Brassica napus genes expressed in the stigma
100. Regulation of growth factor activation by proteoglycans: What is the role of the low affinity receptors?
101. A leucine-rich repeat containing receptor-like kinase marks somatic plant cells competent to form embryos
102. The yeast spt14 gene is homologous to the human PIG-A gene and is required for GPI anchor synthesis
103. GPI-anchors on arabinogalactan-proteins: Implications for signalling in plants
104. The classical arabinogalactan protein gene family of Arabidopsis
105. Proteoglycans and pattern formation: Sugar biochemistry meets developmental genetics
106. Arabinogalactan-proteins in the multiple domains of the plant cell surface
107. Glycosylphosphatidylinositol-anchored cell-surface proteins from Arabidopsis
108. Molecular cloning of a putative plant endomembrane protein resembling vertebrate protein disulfide-isomerase and a phosphatidylinositol-specific phospholinase C.
109. Structure and function of plant cell wall proteins
110. Synthetic genes for glycoprotein design and the elucidation of hydroxyproline-O-glycosylation codes
111. Characterisation of extracellular polysaccharides from suspension cultures of members of the Poaceae
112. Total silencing by intronspliced hairpin RNAs
113. A galactose-rich, cell-wall glycoprotein from styles of Nicotiana alata
114. Proline-and hydroxyproline-rich gene products in the sexual tissues of flowers
115. Hydroxyproline-rich plant glycoproteins
116. Polarity and signalling in plant embryogenesis
117. Regulation of glycosylphosphatidylinositol biosynthesis by GTP. Stimulation of N-acetylglucosaminephosphatidylinositol deacylation
118. Saccharomyces cerevisiae GPI10, the functional homologue of human PIG-B, is required for glycosylphosphatidylinositol-anchor synthesis
119. GPI-linked proteins do not transfer spontaneously from erythrocytes to liposomes. New aspects of reorganization of the cell membrane
120. Presence of a glycosylphosphatidylinositol lipid anchor on rose arabinogalactan proteins
121. PIG-B, a membrane protein of the endoplasmic reticulum with a large lumenal domain, is involved in transferring the third mannose of the GPI anchor
122. Deficiency of the GPI anchor caused by a somatic mutation of the PIG-A gene in paroxysmal nocturnal hemoglobinuria
123. Glycosylphosphatidylinositol-anchor addition signals are processed in Nicotiana tabacum
124. Lipid-linked proteins of plants
125. Promotive and inhibitory effects of diverse arabinogalactan proteins on Daucus carota L. somatic embryogenesis
126. How glycosylphosphatidylinositol-anchored membrane proteins are made
127. Identification of SPT14/CWH6 as the yeast homologue of hPIG-A, a gene involved in the biosynthesis of GPI anchors
128. Restrictive glycosylphosphatidylinositol anchor synthesis in cwh6/gpi3 yeast cells causes aberrant biogenesis of cell wall proteins
129. Signalling in plant embryos during the establishment of the polar axis
130. Isodityrosine cross-linking mediates insolubilization of cell walls in Chlamydomonas
131. Expression cloning of a novel suppressor of the Lec15 and Lec35 glycosylation mutations of Chinese hamster ovary cells
132. The first step of glycosylphosphatidylinositol biosynthesis is mediated by a complex of PIG-A, PIG-H, PIG-C and GPI1
133. Systematic reverse genetics of transfer-DNA-tagged lines of Arabidopsis
134. Ultrastructural localisation and further biochemical characterisation of prolyl 4-hydroxylase from Phaseolus vulgaris: Comparative analysis
135. A pollen tube growth-promoting arabinogalactan protein from Nicotiana alata is similar to the tobacco TTS protein
136. Precipitation of arabic acid and some seed polysaccharides by glycosylphenylazo dyes
137. Characterization of carbohydrate structural features recognized by anti-arabinogalactan-protein monoclonal antibodies
138. Arabinogalactan-proteins from Nicotiana alata and Pyrus communis contain glycosylphosphatidylinositol membrane anchors
139. The affected gene underlying the class K glycosylphosphatidylinositol (GPI) surface protein defect codes for the GPI transamidase
140. Characterization of the cell-wall polysaccharides of Arabidopsis thaliana leaves
141. Differential expression of genes encoding cell wall proteins in vascular tissues from vertical and bent loblolly pine trees
142. Sequence analysis and neuronal expression of fasciclin I in grasshopper and Drosophila