6-MSAS-like polyketide synthase genes occur in lichenized ascomycetes

Mycological Research

Volumn 112, Issue 2, 2008, Pages 289-296

  Schmitt, Imke ^a,b   Kautz, Stefanie ^c   Lumbsch, H Thorsten ^a  

^a FIELD MUSEUM OF NATURAL HISTORY   (United States)

^b HANS KNÖLL INSTITUTE   (Germany)

^c UNIVERSITY OF DUISBURG ESSEN   (Germany)

Author keywords

Ascomycota; Evolution; Lichens; Phylogeny; Polyketide biosynthesis; Secondary metabolites

Indexed keywords

DNA; ENZYME ACTIVITY; FUNGUS; GENETIC ANALYSIS; LICHEN; PHYLOGENY; SECONDARY METABOLITE;

ASCOMYCOTA; BACTERIA (MICROORGANISMS); FUNGI;

EID: 39749156333     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2007.08.023     Document Type: Article

References (43)

1. J. Ahlert E. Shepard N. Lomovskaya E. Zazopoulos A. Staffa B.O. Bachmann K. Huang L. Fonstein A. Czisny R.E. Whitwam C.M. Farnet J.S. Thorson The calicheamicin gene cluster and its iterative type I enediyne PKS Science 297 2002 1173 1176
2. A. Archer A chemical and morphological arrangement of the lichen genus Pertusaria Bibliotheca Lichenologica 53 1993 1 17
3. J. Beck S. Ripka A. Siegner E. Schiltz E. Schweizer The multifunctional 6-methylsalicylic acid synthase gene of Penicillium patulum . Its gene structure relative to that of other polyketide synthases European Journal of Biochemistry 192 1990 487 498
4. L.E.H. Bingle T.J. Simpson C.M. Lazarus Ketosynthase domain probes identify two subclasses of fungal polyketide synthase genes Fungal Genetics and Biology 26 1999 209 223
5. E. Brodo Studies in the lichen genus Ochrolechia . 2. Corticolous species of North America Canadian Journal of Botany 69 1991 733 772
6. D.W. Brown T.H. Adams N.P. Keller Aspergillus has distinct fatty acid synthases for primary and secondary metabolism Proceedings of the National Academy of Sciences, USA 93 1996 14873 14877
7. C.F. Culberson Joint occurrence of a lichen depsidone and its probable depside precursor Science 143 1964 255 256
8. W.L. Culberson C.F. Culberson A phylogenetic view of chemical evolution in the lichens Bryologist 73 1970 1 31
9. W.L. Culberson C.F. Culberson Chemosyndromic variation in lichens Systematic Botany 1 1977 325 339
10. F.E. Dayan J.G. Romagni Lichens as a potential source of pesticides Pesticide Outlook 6 2001 229 232
11. M. Dibben The chemosystematics of the lichen genus Pertusaria in North America north of Mexico Publications in Biology and Geology, Milwaukee Public Museum 5 1980 1 162
12. J.A. Elix U.A. Jenie J.L. Parker A novel synthesis of the lichen depsidones divaronic acid and stenosporonic acid, and the biosynthetic implications Australian Journal of Chemistry 40 1987 1451 1464
13. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
14. M. Grube J. Blaha On the phylogeny of some polyketide synthase genes in the lichenized genus Lecanora Mycological Research 107 2003 1419 1426
15. B. Hanko Die Chemotypen der Flechtengattung Pertusaria in Europa Bibliotheca Lichenologica 19 1983 1 297
16. B. Hanko C. Leuckert T. Ahti Beiträge zur Chemotaxonomie der Gattung Ochrolechia (Lichenes) in Europa Nova Hedwigia 42 1985 165 199
17. D.L. Hawksworth Lichen chemotaxonomy D.H. Brown D.L. Hawksworth R.H. Bailey Lichenology: progress and problems 1976 Academic Press London 139 184
18. J.P. Huelsenbeck F. Ronquist MrBAYES: Bayesian inference of phylogenetic trees Bioinformatics 17 2001 754 755
19. J.P. Huelsenbeck F. Ronquist R. Nielsen J.P. Bollback Bayesian inference of phylogeny and its impact on evolutionary biology Science 294 2001 2310 2314
20. S. Huneck Die wasserabweisende Eigenschaft von Flechtenstoffen Bibliotheca Lichenologica 86 2002 9 12
21. X.-Y. Jia Z.-H. Tian L. Shao X.-D. Qu Q.-F. Zhao J. Tang G.-L. Tang W. Liu Genetic characterization of the chlorothricin gene cluster as a model for spirotetronate antibiotic biosynthesis Chemistry and Biology 13 2006 575 585
22. K. Karplus C. Barrett R. Hughey Hidden Markov models for detecting remote protein homologies Bioinformatics 14 1998 846 856
23. S. Kroken N.L. Glass J.W. Taylor O.C. Yoder B.G. Turgeon Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes Proceedings of the National Academy of Sciences, USA 100 2003 15670 15675
24. 2 diffusion and prevent depression of net photosynthesis at high water content? Oecologia 112 1997 1 3
25. K. Langfelder B. Jahn H. Gehringer A. Schmidt G. Wanner A.A. Brakhage Identification of a polyketide synthase gene pksP of Aspergillus fumigatus involved in conidial pigment biosynthesis and virulence Medical Microbiology and Immunology 187 1998 79 89
26. B. Larget D.L. Simon Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees Molecular Biology and Evolution 16 1999 750 759
27. H.T. Lumbsch The use of metabolic data in lichenology at the species and subspecific levels Lichenologist 30 1998 357 367
28. H.T. Lumbsch Taxonomic use of metabolic data in lichen-forming fungi J.C. Frisvad P.D. Bridge D.K. Arora Chemical Fungal Taxonomy 1998 Marcel Dekker New York 345 387
29. H.T. Lumbsch I. Schmitt D. Barker M. Pagel Evolution of micromorphological and chemical characters in the lichen-forming fungal family Pertusariaceae Biological Journal of the Linnean Society 89 2006 615 626
30. V. Miao M.-F. Coeffet-LeGal D. Brown S. Sinnemann G. Donaldson J. Davies Genetic approaches to harvesting lichen products Trends in Biotechnology 19 2001 349 355
31. T.P. Nicholson B.A.M. Rudd M. Dawson C.M. Lazarus T.J. Simpson R.J. Cox Design and utility of oligonucleotide gene probes for fungal polyketide synthases Chemistry and Biology 8 2001 157 178
32. R.D.M. Page Treeview: an application to display phylogenetic trees on personal computers Computer Applications in the Biosciences 12 1996 357 358
33. P.M. Plonka M. Grabacka Melanin synthesis in microorganisms — biotechnological and medical aspects Acta Biochimica Polonica 53 2006 429 443
34. M. Sauer P. Lu R. Sangari S. Kennedy J. Polishook G. Bills Z. An Estimating polyketide metabolic potential among non-sporulating fungal endophytes of Vaccinium macrocarpon Mycological Research 106 2002 460 470
35. I. Schmitt H.T. Lumbsch Molecular phylogeny of the Pertusariaceae supports secondary chemistry as an important systematic character set in lichen-forming ascomycetes Molecular Phylogenetics and Evolution 33 2004 43 55
36. I. Schmitt M.P. Martin S. Kautz H.T. Lumbsch Diversity of non-reducing polyketide synthase genes in the Pertusariales (lichenized Ascomycota ): a phylogenetic perspective Phytochemistry 66 2005 1241 1253
37. I. Schmitt Y. Yamamoto H.T. Lumbsch Phylogeny of Pertusariales (Ascomycotina) : resurrection of Ochrolechiaceae and new circumscription of Megasporaceae Journal of the Hattori Botanical Laboratory 100 2006 753 764
38. V. Souza-Egipsy F. Valladares C. Ascaro Water distribution in foliose lichen species: interactions between method of hydration, lichen substances and thallus anatomy Annals of Botany 86 2000 595 601
39. J. Staunton K. Weissmann Polyketide biosynthesis: a millennium review Natural Product Reports 18 2001 380 416
40. D.L. Swofford PAUP*: phylogenetic analysis using parsimony (*and other methods) Version 4 2003 Sinauer Associates Sunderland, MA
41. G. Weitnauer A. Mühlenweg A. Trefzer D. Hoffmeister R.D. Süssmuth G. Jung K. Welzel A. Vente U. Girreser A. Bechthold Biosynthesis of the orthosomycin antibiotic avilamycin A: deductions from the molecular analysis of the avi biosynthetic gene cluster of Streptomyces viridochromogenes Tü57 and production of new antibiotics Chemistry and Biology 8 2001 569 581
42. S. Whelan N. Goldman A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach Molelular Biolology and Evolution 18 2001 691 699
43. Y. Yamamoto Y. Kinoshita I. Yoshimura Culture of thallus fragments and redifferentiation of lichens I. Kranner R.P. Beckett A.K. Varma Protocols in Lichenology: culturing, biochemistry, ecophysiology and use in biomonitoring 2002 Springer–Verlag Berlin 34 46