-
1
-
-
0029088866
-
Neonatal predictors of infection status and early death among 332 infants at risk of HIV-1 infection monitored prospectively from birth. New York City Perinatal HIV Transmission Collaborative Study Group
-
Abrams E.J., Matheson P.B., Thomas P.A., Thea D.M., Krasinski K., Lambert G., Shaffer N., Bamji M., Hutson D., Grimm K., et al. Neonatal predictors of infection status and early death among 332 infants at risk of HIV-1 infection monitored prospectively from birth. New York City Perinatal HIV Transmission Collaborative Study Group. Pediatrics 96 (1995) 451-458
-
(1995)
Pediatrics
, vol.96
, pp. 451-458
-
-
Abrams, E.J.1
Matheson, P.B.2
Thomas, P.A.3
Thea, D.M.4
Krasinski, K.5
Lambert, G.6
Shaffer, N.7
Bamji, M.8
Hutson, D.9
Grimm, K.10
-
2
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H. A new look at the statistical model identification. IEEE Trans. Autom. Control 19 (1974) 716-723
-
(1974)
IEEE Trans. Autom. Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
3
-
-
27144440023
-
Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1
-
Althaus C.L., and Bonhoeffer S. Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1. J. Virol. 79 (2005) 13572-13578
-
(2005)
J. Virol.
, vol.79
, pp. 13572-13578
-
-
Althaus, C.L.1
Bonhoeffer, S.2
-
4
-
-
0042208362
-
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
-
Anisimova M., Nielsen R., and Yang Z. Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164 (2003) 1229-1236
-
(2003)
Genetics
, vol.164
, pp. 1229-1236
-
-
Anisimova, M.1
Nielsen, R.2
Yang, Z.3
-
5
-
-
33644911496
-
Recombination estimation under complex evolutionary models with the coalescent composite likelihood method
-
Carvajal-Rodriguez A., Crandall K.A., and Posada D. Recombination estimation under complex evolutionary models with the coalescent composite likelihood method. Mol. Biol. Evol. 23 (2006) 817-827
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 817-827
-
-
Carvajal-Rodriguez, A.1
Crandall, K.A.2
Posada, D.3
-
6
-
-
34249693632
-
Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy
-
Carvajal-Rodriguez A., Crandall K.A., and Posada D. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infect. Genet. Evol. 7 (2007) 476-483
-
(2007)
Infect. Genet. Evol.
, vol.7
, pp. 476-483
-
-
Carvajal-Rodriguez, A.1
Crandall, K.A.2
Posada, D.3
-
7
-
-
33645994804
-
Nef gene sequence variation among HIV-1-infected African children
-
Chakraborty R., Reinis M., Rostron T., Philpott S., Dong T., D'Agostino A., Musoke R., Silva E., Stumpf M., Weiser B., Burger H., and Rowland-Jones S.L. Nef gene sequence variation among HIV-1-infected African children. HIV Med. 7 (2006) 75-84
-
(2006)
HIV Med.
, vol.7
, pp. 75-84
-
-
Chakraborty, R.1
Reinis, M.2
Rostron, T.3
Philpott, S.4
Dong, T.5
D'Agostino, A.6
Musoke, R.7
Silva, E.8
Stumpf, M.9
Weiser, B.10
Burger, H.11
Rowland-Jones, S.L.12
-
8
-
-
0033028201
-
Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection
-
Crandall K.A., Kelsey C.R., Imamichi H., Lane C.H., and Salzman N.P. Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection. Mol. Biol. Evol. 16 (1999) 372-382
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 372-382
-
-
Crandall, K.A.1
Kelsey, C.R.2
Imamichi, H.3
Lane, C.H.4
Salzman, N.P.5
-
9
-
-
0027690383
-
Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes
-
Delwart E.L., Shpaer E.G., Louwagie J., McCutchen F.E., Grez M., Rubsamen-Waigmann H., and Mullins J.I. Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science 262 (1993) 1257-1261
-
(1993)
Science
, vol.262
, pp. 1257-1261
-
-
Delwart, E.L.1
Shpaer, E.G.2
Louwagie, J.3
McCutchen, F.E.4
Grez, M.5
Rubsamen-Waigmann, H.6
Mullins, J.I.7
-
10
-
-
39649099394
-
-
Drummond, A.J., Rambaut, A., 2006. BEAST v1.4.
-
Drummond, A.J., Rambaut, A., 2006. BEAST v1.4.
-
-
-
-
11
-
-
33646251107
-
Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1
-
Edwards C.T., Holmes E.C., Wilson D.J., Viscidi R.P., Abrams E.J., Phillips R.E., and Drummond A.J. Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1. BMC Evol. Biol. 6 (2006) 28
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 28
-
-
Edwards, C.T.1
Holmes, E.C.2
Wilson, D.J.3
Viscidi, R.P.4
Abrams, E.J.5
Phillips, R.E.6
Drummond, A.J.7
-
12
-
-
0031060165
-
Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease
-
Ganeshan S., Dickover R.E., Korber B.M., Bryson Y.J., and Wolinsky S.M. Human immunodeficiency virus type 1 genetic evolution in children with different rates of development of disease. J. Virol. 71 (1997) 663-677
-
(1997)
J. Virol.
, vol.71
, pp. 663-677
-
-
Ganeshan, S.1
Dickover, R.E.2
Korber, B.M.3
Bryson, Y.J.4
Wolinsky, S.M.5
-
13
-
-
0346373759
-
Unifying the epidemiological and evolutionary dynamics of pathogens
-
Grenfell B.T., Pybus O.G., Gog J.R., Wood J.L., Daly J.M., Mumford J.A., and Holmes E.C. Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303 (2004) 327-332
-
(2004)
Science
, vol.303
, pp. 327-332
-
-
Grenfell, B.T.1
Pybus, O.G.2
Gog, J.R.3
Wood, J.L.4
Daly, J.M.5
Mumford, J.A.6
Holmes, E.C.7
-
14
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
15
-
-
33646586721
-
A Dirichlet process model for detecting positive selection in protein-coding DNA sequences
-
Huelsenbeck J.P., Jain S., Frost S.W., and Pond S.L. A Dirichlet process model for detecting positive selection in protein-coding DNA sequences. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 6263-6268
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 6263-6268
-
-
Huelsenbeck, J.P.1
Jain, S.2
Frost, S.W.3
Pond, S.L.4
-
16
-
-
0028874043
-
Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance
-
Kellam P., and Larder B.A. Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance. J. Virol. 69 (1995) 669-674
-
(1995)
J. Virol.
, vol.69
, pp. 669-674
-
-
Kellam, P.1
Larder, B.A.2
-
17
-
-
33847246314
-
Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
-
Lemey P., Pond S.L.K., Drummond A.J., Pybus O.G., Shapiro B., Barroso H., Taveira N., and Rambaut A. Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. PLoS Comput. Biol. 3 (2007) e29
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Lemey, P.1
Pond, S.L.K.2
Drummond, A.J.3
Pybus, O.G.4
Shapiro, B.5
Barroso, H.6
Taveira, N.7
Rambaut, A.8
-
18
-
-
0030947397
-
Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses
-
Liu S.L., Schacker T., Musey L., Shriner D., McElrath M.J., Corey L., and Mullins J.I. Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses. J. Virol. 71 (1997) 4284-4295
-
(1997)
J. Virol.
, vol.71
, pp. 4284-4295
-
-
Liu, S.L.1
Schacker, T.2
Musey, L.3
Shriner, D.4
McElrath, M.J.5
Corey, L.6
Mullins, J.I.7
-
19
-
-
0036838722
-
Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS
-
Liu S.L., Mittler J.E., Nickle D.C., Mulvania T.M., Shriner D., Rodrigo A.G., Kosloff B., He X., Corey L., and Mullins J.I. Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS. J. Virol. 76 (2002) 10674-10684
-
(2002)
J. Virol.
, vol.76
, pp. 10674-10684
-
-
Liu, S.L.1
Mittler, J.E.2
Nickle, D.C.3
Mulvania, T.M.4
Shriner, D.5
Rodrigo, A.G.6
Kosloff, B.7
He, X.8
Corey, L.9
Mullins, J.I.10
-
20
-
-
0036199914
-
A coalescent based-method for detecting and estimating recombination from gene sequences
-
McVean G.A.T., Awadalla P., and Fearnhead P. A coalescent based-method for detecting and estimating recombination from gene sequences. Genetics 160 (2002) 1231-1241
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
McVean, G.A.T.1
Awadalla, P.2
Fearnhead, P.3
-
21
-
-
0032844935
-
Mosaic structure of the human immunodeficiency virus type 1 genome infecting lymphoid cells and the brain: evidence for frequent in vivo recombination events in the evolution of regional populations
-
Morris A., Marsden M., Halcrow K., Hughes E.S., Brettle R.P., Bell J.E., and Simmonds P. Mosaic structure of the human immunodeficiency virus type 1 genome infecting lymphoid cells and the brain: evidence for frequent in vivo recombination events in the evolution of regional populations. J. Virol. 73 (1999) 8720-8731
-
(1999)
J. Virol.
, vol.73
, pp. 8720-8731
-
-
Morris, A.1
Marsden, M.2
Halcrow, K.3
Hughes, E.S.4
Brettle, R.P.5
Bell, J.E.6
Simmonds, P.7
-
22
-
-
0028024626
-
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
-
Muse S.V., and Gaut B.S. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol. Biol. Evol. 11 (1994) 715-724
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
23
-
-
0036999990
-
Genetic recombination and its role in the development of the HIV-1 pandemic
-
Nájera R., Delgado E., Pérez-Alvarez L., and Thomson M.M. Genetic recombination and its role in the development of the HIV-1 pandemic. AIDS 16 Suppl. 4 (2002) S3-S16
-
(2002)
AIDS
, vol.16
, Issue.SUPPL. 4
-
-
Nájera, R.1
Delgado, E.2
Pérez-Alvarez, L.3
Thomson, M.M.4
-
24
-
-
0031972161
-
Likelihood methods for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R., and Yang Z. Likelihood methods for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148 (1998) 929-936
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
25
-
-
0026350804
-
Antigenic diversity threshold and the development of AIDS
-
Nowak M.A., Anderson R.M., McLean A.R., Wolfs T.F.W., Goudsmit J., and May R.M. Antigenic diversity threshold and the development of AIDS. Science 254 (1991) 963-969
-
(1991)
Science
, vol.254
, pp. 963-969
-
-
Nowak, M.A.1
Anderson, R.M.2
McLean, A.R.3
Wolfs, T.F.W.4
Goudsmit, J.5
May, R.M.6
-
26
-
-
0029958131
-
HIV-1 evolution and disease progression
-
Nowak M.A., Anderson R.M., Boerlijst M.C., Bonhoeffer S., May R.M., and McMichael A.J. HIV-1 evolution and disease progression. Science 274 (1996) 1008-1010
-
(1996)
Science
, vol.274
, pp. 1008-1010
-
-
Nowak, M.A.1
Anderson, R.M.2
Boerlijst, M.C.3
Bonhoeffer, S.4
May, R.M.5
McMichael, A.J.6
-
28
-
-
27844569825
-
Site-to-site variation of synonymous substitution rates
-
Pond S.K., and Muse S.V. Site-to-site variation of synonymous substitution rates. Mol. Biol. Evol. 22 (2005) 2375-2385
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 2375-2385
-
-
Pond, S.K.1
Muse, S.V.2
-
29
-
-
17744396121
-
Not so different after all: a comparison of methods for detecting amino acid sites under selection
-
Pond S.L.K., and Frost S.D. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22 (2005) 1208-1222
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Pond, S.L.K.1
Frost, S.D.2
-
30
-
-
17744395033
-
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
-
Pond S.L.K., and Frost S.D.W. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21 (2005) 2531-2533
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.L.K.1
Frost, S.D.W.2
-
31
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond S.L.K., Frost S.D.W., and Muse S.V. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21 (2005) 676-679
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.K.1
Frost, S.D.W.2
Muse, S.V.3
-
32
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
33
-
-
0034988391
-
Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1)
-
Posada D., and Crandall K.A. Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1). Mol. Biol. Evol. 18 (2001) 897-906
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 897-906
-
-
Posada, D.1
Crandall, K.A.2
-
34
-
-
33646468974
-
Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART
-
Potter S.J., Lemey P., Dyer W.B., Sullivan J.S., Chew C.B., Vandamme A.M., Dwyer D.E., and Saksena N.K. Genetic analyses reveal structured HIV-1 populations in serially sampled T lymphocytes of patients receiving HAART. Virology 348 (2006) 35-46
-
(2006)
Virology
, vol.348
, pp. 35-46
-
-
Potter, S.J.1
Lemey, P.2
Dyer, W.B.3
Sullivan, J.S.4
Chew, C.B.5
Vandamme, A.M.6
Dwyer, D.E.7
Saksena, N.K.8
-
35
-
-
0034044313
-
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut A. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16 (2000) 395-399
-
(2000)
Bioinformatics
, vol.16
, pp. 395-399
-
-
Rambaut, A.1
-
38
-
-
0036828069
-
Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration
-
Ross H.A., and Rodrigo A.G. Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration. J. Virol. 76 (2002) 11715-11720
-
(2002)
J. Virol.
, vol.76
, pp. 11715-11720
-
-
Ross, H.A.1
Rodrigo, A.G.2
-
39
-
-
20444366581
-
Evolution of human immunodeficiency virus under selection and weak recombination
-
Rouzine I.M., and Coffin J.M. Evolution of human immunodeficiency virus under selection and weak recombination. Genetics 170 (2005) 7-18
-
(2005)
Genetics
, vol.170
, pp. 7-18
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
40
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
41
-
-
33749827106
-
Robust inference of positive selection from recombining coding sequences
-
Scheffler K., Martin D.P., and Seoighe C. Robust inference of positive selection from recombining coding sequences. Bioinformatics 22 (2006) 2493-2499
-
(2006)
Bioinformatics
, vol.22
, pp. 2493-2499
-
-
Scheffler, K.1
Martin, D.P.2
Seoighe, C.3
-
42
-
-
0029095624
-
Natural selection on the gag, pol, and env, genes of human immunodeficiency virus 1 (HIV-1)
-
Seibert S.A., Howell C.Y., Hughes M.K., and Hughes A.L. Natural selection on the gag, pol, and env, genes of human immunodeficiency virus 1 (HIV-1). Mol. Biol. Evol. 12 (1995) 803-813
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 803-813
-
-
Seibert, S.A.1
Howell, C.Y.2
Hughes, M.K.3
Hughes, A.L.4
-
43
-
-
0032710838
-
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
-
Shankarappa R., Margolick J.B., Gange S.J., Rodrigo A.G., Upchurch D., Farzadegan H., Gupta P., Rinaldo C.R., Learn G.H., He X., Huang X.-L., and Mullins J.I. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J. Virol. 73 (1999) 10489-10502
-
(1999)
J. Virol.
, vol.73
, pp. 10489-10502
-
-
Shankarappa, R.1
Margolick, J.B.2
Gange, S.J.3
Rodrigo, A.G.4
Upchurch, D.5
Farzadegan, H.6
Gupta, P.7
Rinaldo, C.R.8
Learn, G.H.9
He, X.10
Huang, X.-L.11
Mullins, J.I.12
-
44
-
-
0037986694
-
Potential impact of recombination on sitewise approaches for detecting positive natural selection
-
Shriner D., Nickle D.C., Jensen M.A., and Mullins J.I. Potential impact of recombination on sitewise approaches for detecting positive natural selection. Genet. Res. 81 (2003) 115-121
-
(2003)
Genet. Res.
, vol.81
, pp. 115-121
-
-
Shriner, D.1
Nickle, D.C.2
Jensen, M.A.3
Mullins, J.I.4
-
45
-
-
1942421715
-
Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection
-
Shriner D., Shankarappa R., Jensen M.A., Nickle D.C., Mittler J.E., Margolick J.B., and Mullins J.I. Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection. Genetics 166 (2004) 1155-1164
-
(2004)
Genetics
, vol.166
, pp. 1155-1164
-
-
Shriner, D.1
Shankarappa, R.2
Jensen, M.A.3
Nickle, D.C.4
Mittler, J.E.5
Margolick, J.B.6
Mullins, J.I.7
-
47
-
-
0028818258
-
Convergent evolution within the V3 loop domain of human immunodeficiency virus type 1 in association with disease progression
-
Strunnikova N., Ray S.C., Livingston R.A., Rubalcaba E., and Viscidi R.P. Convergent evolution within the V3 loop domain of human immunodeficiency virus type 1 in association with disease progression. J. Virol. 69 (1995) 7548-7558
-
(1995)
J. Virol.
, vol.69
, pp. 7548-7558
-
-
Strunnikova, N.1
Ray, S.C.2
Livingston, R.A.3
Rubalcaba, E.4
Viscidi, R.P.5
-
48
-
-
0032009638
-
Evolution of human immunodeficiency virus type 1 in relation to disease progression in children
-
Strunnikova N., Ray S.C., Lancioni C., Nguyen M., and Viscidi R.P. Evolution of human immunodeficiency virus type 1 in relation to disease progression in children. J. Hum. Virol. 1 (1998) 224-239
-
(1998)
J. Hum. Virol.
, vol.1
, pp. 224-239
-
-
Strunnikova, N.1
Ray, S.C.2
Lancioni, C.3
Nguyen, M.4
Viscidi, R.P.5
-
49
-
-
0032849322
-
A method for detecting positive selection at single amino acid sites
-
Suzuki Y., and Gojobori T. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 16 (1999) 1315-1328
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1315-1328
-
-
Suzuki, Y.1
Gojobori, T.2
-
51
-
-
39649107373
-
-
Team, R.D.C., 2006. R: a language and environment for statistical computing. http://www.R-project.org (online).
-
Team, R.D.C., 2006. R: a language and environment for statistical computing. http://www.R-project.org (online).
-
-
-
-
52
-
-
4644278569
-
Selection in context: patterns of natural selection in the glycoprotein 120 region of human immunodeficiency virus 1 within infected individuals
-
Templeton A.R., Reichert R.A., Weisstein A.E., Yu X.-F., and Markham R.B. Selection in context: patterns of natural selection in the glycoprotein 120 region of human immunodeficiency virus 1 within infected individuals. Genetics 167 (2004) 1547-1561
-
(2004)
Genetics
, vol.167
, pp. 1547-1561
-
-
Templeton, A.R.1
Reichert, R.A.2
Weisstein, A.E.3
Yu, X.-F.4
Markham, R.B.5
-
53
-
-
0028270886
-
Maternal predictors of perinatal human immunodeficiency virus transmission. The New York City Perinatal HIV Transmission Collaborative Study Group
-
Thomas P.A., Weedon J., Krasinski K., Abrams E., Shaffer N., Matheson P., Bamji M., Kaul A., Hutson D., Grimm K.T., et al. Maternal predictors of perinatal human immunodeficiency virus transmission. The New York City Perinatal HIV Transmission Collaborative Study Group. Pediatr. Infect. Dis. J. 13 (1994) 489-495
-
(1994)
Pediatr. Infect. Dis. J.
, vol.13
, pp. 489-495
-
-
Thomas, P.A.1
Weedon, J.2
Krasinski, K.3
Abrams, E.4
Shaffer, N.5
Matheson, P.6
Bamji, M.7
Kaul, A.8
Hutson, D.9
Grimm, K.T.10
-
54
-
-
0031574072
-
The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
55
-
-
0008890772
-
The evolution of HIV. HIV evolution and disease progression via longitudinal studies
-
Crandall K.A. (Ed), The Johns Hopkins University Press
-
Viscidi R. The evolution of HIV. HIV evolution and disease progression via longitudinal studies. In: Crandall K.A. (Ed). The Evolution of HIV (1999), The Johns Hopkins University Press 346-389
-
(1999)
The Evolution of HIV
, pp. 346-389
-
-
Viscidi, R.1
-
56
-
-
33947276402
-
Polymorphisms in Nef associated with different clinical outcomes in HIV type 1 subtype C-infected children
-
Walker P.R., Ketunuti M., Choge I.A., Meyers T., Gray G., Holmes E.C., and Morris L. Polymorphisms in Nef associated with different clinical outcomes in HIV type 1 subtype C-infected children. AIDS Res. Hum. Retrovirus. 23 (2007) 204-215
-
(2007)
AIDS Res. Hum. Retrovirus.
, vol.23
, pp. 204-215
-
-
Walker, P.R.1
Ketunuti, M.2
Choge, I.A.3
Meyers, T.4
Gray, G.5
Holmes, E.C.6
Morris, L.7
-
57
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
Watterson G.A. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7 (1975) 256-276
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
58
-
-
0041571679
-
Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression
-
Williamson S. Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression. Mol. Biol. Evol. 20 (2003) 1318-1325
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1318-1325
-
-
Williamson, S.1
-
59
-
-
14544287462
-
A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients
-
Williamson S., Perry S.M., Bustamante C.D., Orive M.E., Stearns M.N., and Kelly J.K. A statistical characterization of consistent patterns of human immunodeficiency virus evolution within infected patients. Mol. Biol. Evol. 22 (2005) 456-468
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 456-468
-
-
Williamson, S.1
Perry, S.M.2
Bustamante, C.D.3
Orive, M.E.4
Stearns, M.N.5
Kelly, J.K.6
-
60
-
-
33645229840
-
Estimating diversifying selection and functional constraint in the presence of recombination
-
Wilson D.J., and McVean G. Estimating diversifying selection and functional constraint in the presence of recombination. Genetics 172 (2006) 1411-1425
-
(2006)
Genetics
, vol.172
, pp. 1411-1425
-
-
Wilson, D.J.1
McVean, G.2
-
61
-
-
15844385082
-
Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection
-
Wolinsky S.M., Korber B.T.M., Neumann A.U., Daniels M., Kunstman K.J., Whetsell A.J., Furtado M.R., Cao Y., Ho D.D., Safrit J.T., and Koup R.A. Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection. Science 272 (1996) 537-542
-
(1996)
Science
, vol.272
, pp. 537-542
-
-
Wolinsky, S.M.1
Korber, B.T.M.2
Neumann, A.U.3
Daniels, M.4
Kunstman, K.J.5
Whetsell, A.J.6
Furtado, M.R.7
Cao, Y.8
Ho, D.D.9
Safrit, J.T.10
Koup, R.A.11
-
62
-
-
0033995286
-
Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes
-
Yamaguchi-Kabata Y., and Gojobori T. Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes. J. Virol. 74 (2000) 4335-4350
-
(2000)
J. Virol.
, vol.74
, pp. 4335-4350
-
-
Yamaguchi-Kabata, Y.1
Gojobori, T.2
-
63
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 (1997) 555-556
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
64
-
-
0032737463
-
Genealogical evidence for positive selection in the nef gene of HIV-1
-
Zanotto P.M.D.A., Kallas E.G., de Souza R.F., and Holmes E.C. Genealogical evidence for positive selection in the nef gene of HIV-1. Genetics 153 (1999) 1077-1089
-
(1999)
Genetics
, vol.153
, pp. 1077-1089
-
-
Zanotto, P.M.D.A.1
Kallas, E.G.2
de Souza, R.F.3
Holmes, E.C.4
-
65
-
-
33750969378
-
Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of disease
-
Zhang H., Hoffmann F., He J., He X., Kankasa C., West J.T., Mitchell C.D., Ruprecht R.M., Orti G., and Wood C. Characterization of HIV-1 subtype C envelope glycoproteins from perinatally infected children with different courses of disease. Retrovirology 3 (2006) 73
-
(2006)
Retrovirology
, vol.3
, pp. 73
-
-
Zhang, H.1
Hoffmann, F.2
He, J.3
He, X.4
Kankasa, C.5
West, J.T.6
Mitchell, C.D.7
Ruprecht, R.M.8
Orti, G.9
Wood, C.10
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