-
2
-
-
33751012428
-
Alu elements as regulators of gene expression
-
17020921 10.1093/nar/gkl706 1636486
-
Hasler J Strub K Alu elements as regulators of gene expression Nucleic Acids Res 2006, 34:5491-5497. 17020921 10.1093/nar/gkl706 1636486
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5491-5497
-
-
Hasler, J.1
Strub, K.2
-
3
-
-
12344289004
-
Mobile genetic elements and sexual reproduction
-
16093689 10.1159/000084969
-
Arkhipova IR Mobile genetic elements and sexual reproduction Cytogenet Genome Res 2005, 110:372-382. 16093689 10.1159/000084969
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 372-382
-
-
Arkhipova, I.R.1
-
4
-
-
34249752804
-
Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns
-
17181857 10.1186/gb-2006-7-12-r120 1794433
-
Sironi M Menozzi G Comi GP Cereda M Cagliani R Bresolin N Pozzoli U Gene function and expression level influence the insertion/fixation dynamics of distinct transposon families in mammalian introns Genome Biol 2006, 7:R120. 17181857 10.1186/gb-2006-7-12-r120 1794433
-
(2006)
Genome Biol
, vol.7
-
-
Sironi, M.1
Menozzi, G.2
Comi, G.P.3
Cereda, M.4
Cagliani, R.5
Bresolin, N.6
Pozzoli, U.7
-
5
-
-
34249937354
-
Thousands of human mobile element fragments undergo strong purifying selection near developmental genes
-
17463089 10.1073/pnas.0611223104 1876562
-
Lowe CB Bejerano G Haussler D Thousands of human mobile element fragments undergo strong purifying selection near developmental genes Proc Natl Acad Sci USA 2007, 104:8005-8010. 17463089 10.1073/ pnas.0611223104 1876562
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8005-8010
-
-
Lowe, C.B.1
Bejerano, G.2
Haussler, D.3
-
7
-
-
2942555396
-
Retrotransposon-derived elements in the mammalian genome: A potential source of disease
-
15190191 10.1023/B:BOLI.0000031096.81518.66
-
Druker R Whitelaw E Retrotransposon-derived elements in the mammalian genome: A potential source of disease J Inherit Metab Dis 2004, 27:319-330. 15190191 10.1023/B:BOLI.0000031096.81518.66
-
(2004)
J Inherit Metab Dis
, vol.27
, pp. 319-330
-
-
Druker, R.1
Whitelaw, E.2
-
8
-
-
32044432568
-
Transposon-free regions in mammalian genomes
-
16365385 10.1101/gr.4624306 1361711
-
Simons C Pheasant M Makunin IV Mattick JS Transposon-free regions in mammalian genomes Genome Res 2006, 16:164-172. 16365385 10.1101/ gr.4624306 1361711
-
(2006)
Genome Res
, vol.16
, pp. 164-172
-
-
Simons, C.1
Pheasant, M.2
Makunin, I.V.3
Mattick, J.S.4
-
9
-
-
24144466902
-
Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences
-
16037065 10.1093/hmg/ddi257
-
Sironi M Menozzi G Comi GP Cagliani R Bresolin N Pozzoli U Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences Hum Mol Genet 2005, 14:2533-2546. 16037065 10.1093/hmg/ddi257
-
(2005)
Hum Mol Genet
, vol.14
, pp. 2533-2546
-
-
Sironi, M.1
Menozzi, G.2
Comi, G.P.3
Cagliani, R.4
Bresolin, N.5
Pozzoli, U.6
-
10
-
-
0141609681
-
The evolution of tribospheny and the antiquity of mammalian clades
-
12878472 10.1016/S1055-7903(03)00113-1
-
Woodburne MO Rich TH Springer MS The evolution of tribospheny and the antiquity of mammalian clades Mol Phylogenet Evol 2003, 28:360-385. 12878472 10.1016/S1055-7903(03)00113-1
-
(2003)
Mol Phylogenet Evol
, vol.28
, pp. 360-385
-
-
Woodburne, M.O.1
Rich, T.H.2
Springer, M.S.3
-
11
-
-
1242274629
-
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
-
14757817 10.1073/pnas.0307968100 341801
-
Vandepoele K De Vos W Taylor JS Meyer A Van de Peer Y Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates Proc Natl Acad Sci USA 2004, 101:1638-1643. 14757817 10.1073/pnas.0307968100 341801
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
De Vos, W.2
Taylor, J.S.3
Meyer, A.4
Van de Peer, Y.5
-
12
-
-
0032695265
-
Mouse patched1 controls body size determination and limb patterning
-
10498679
-
Milenkovic L Goodrich LV Higgins KM Scott MP Mouse patched1 controls body size determination and limb patterning Development 1999, 126(20):4431-4440. 10498679
-
(1999)
Development
, vol.126
, Issue.20
, pp. 4431-4440
-
-
Milenkovic, L.1
Goodrich, L.V.2
Higgins, K.M.3
Scott, M.P.4
-
13
-
-
0033598967
-
MLL2, the second human homolog of the Drosophila trithorax gene, maps to 19q13.1 and is amplified in solid tumor cell lines
-
10637508 10.1038/sj.onc.1203291
-
Huntsman DG Chin SF Muleris M Batley SJ Collins VP Wiedemann LM Aparicio S Caldas C MLL2, the second human homolog of the Drosophila trithorax gene, maps to 19q13.1 and is amplified in solid tumor cell lines Oncogene 1999, 18:7975-7984. 10637508 10.1038/sj.onc.1203291
-
(1999)
Oncogene
, vol.18
, pp. 7975-7984
-
-
Huntsman, D.G.1
Chin, S.F.2
Muleris, M.3
Batley, S.J.4
Collins, V.P.5
Wiedemann, L.M.6
Aparicio, S.7
Caldas, C.8
-
14
-
-
0242636324
-
The outs and ins of transposition: From mu to kangaroo
-
10.1038/nrm1241
-
Curcio MJ Derbyshire KM The outs and ins of transposition: From mu to kangaroo Nature reviews 2003, 4:865-877. 10.1038/nrm1241
-
(2003)
Nature Reviews
, vol.4
, pp. 865-877
-
-
Curcio, M.J.1
Derbyshire, K.M.2
-
15
-
-
0029556272
-
Evolution and biological significance of human retroelements
-
8828141 10.1007/BF01728654
-
Leib-Mosch C Seifarth W Evolution and biological significance of human retroelements Virus Genes 1995, 11:133-145. 8828141 10.1007/BF01728654
-
(1995)
Virus Genes
, vol.11
, pp. 133-145
-
-
Leib-Mosch, C.1
Seifarth, W.2
-
16
-
-
19944430797
-
Genomic maps and comparative analysis of histone modifications in human and mouse
-
15680324 10.1016/j.cell.2005.01.001
-
Bernstein BE Kamal M Lindblad-Toh K Bekiranov S Bailey DK Huebert DJ McMahon S Karlsson EK Kulbokas EJ 3rd Gingeras TR Genomic maps and comparative analysis of histone modifications in human and mouse Cell 2005, 120:169-181. 15680324 10.1016/j.cell.2005.01.001
-
(2005)
Cell
, vol.120
, pp. 169-181
-
-
Bernstein, B.E.1
Kamal, M.2
Lindblad-Toh, K.3
Bekiranov, S.4
Bailey, D.K.5
Huebert, D.J.6
McMahon, S.7
Karlsson, E.K.8
Kulbokas III, E.J.9
Gingeras, T.R.10
-
17
-
-
33645833857
-
Conservation of RET regulatory function from human to zebrafish without sequence similarity
-
16556802 10.1126/science.1124070
-
Fisher S Grice EA Vinton RM Bessling SL McCallion AS Conservation of RET regulatory function from human to zebrafish without sequence similarity Science 2006, 312:276-279. 16556802 10.1126/science.1124070
-
(2006)
Science
, vol.312
, pp. 276-279
-
-
Fisher, S.1
Grice, E.A.2
Vinton, R.M.3
Bessling, S.L.4
McCallion, A.S.5
-
18
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
16630819 10.1016/j.cell.2006.02.041
-
Bernstein BE Mikkelsen TS Xie X Kamal M Huebert DJ Cuff J Fry B Meissner A Wernig M Plath K A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 2006, 125:315-326. 16630819 10.1016/j.cell.2006.02.041
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
19
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
15269773 10.1038/nature02651
-
Lippman Z Gendrel AV Black M Vaughn MW Dedhia N McCombie WR Lavine K Mittal V May B Kasschau KD Role of transposable elements in heterochromatin and epigenetic control Nature 2004, 430:471-476. 15269773 10.1038/nature02651
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.D.10
-
20
-
-
0034094820
-
SINE retroposons can be used in vivo as nucleation centers for de novo methylation
-
10779333 10.1128/MCB.20.10.3434-3441.2000 85636
-
Arnaud P Goubely C Pelissier T Deragon JM SINE retroposons can be used in vivo as nucleation centers for de novo methylation Mol Cell Biol 2000, 20:3434-3441. 10779333 10.1128/MCB.20.10.3434-3441.2000 85636
-
(2000)
Mol Cell Biol
, vol.20
, pp. 3434-3441
-
-
Arnaud, P.1
Goubely, C.2
Pelissier, T.3
Deragon, J.M.4
-
21
-
-
15444372817
-
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
-
15678104 10.1038/sj.emboj.7600545 549616
-
Martens JH O'Sullivan RJ Braunschweig U Opravil S Radolf M Steinlein P Jenuwein T The profile of repeat-associated histone lysine methylation states in the mouse epigenome Embo J 2005, 24:800-812. 15678104 10.1038/ sj.emboj.7600545 549616
-
(2005)
Embo J
, vol.24
, pp. 800-812
-
-
Martens, J.H.1
O'Sullivan, R.J.2
Braunschweig, U.3
Opravil, S.4
Radolf, M.5
Steinlein, P.6
Jenuwein, T.7
-
22
-
-
3042854695
-
Epigenetic reprogramming during early development in mammals
-
15175501 10.1530/rep.1.00221
-
Santos F Dean W Epigenetic reprogramming during early development in mammals Reproduction 2004, 127:643-651. 15175501 10.1530/rep.1.00221
-
(2004)
Reproduction
, vol.127
, pp. 643-651
-
-
Santos, F.1
Dean, W.2
-
23
-
-
84870647022
-
-
UCSC Genome Browser http://hgdownload.cse.ucsc.edu/downloads.html
-
UCSC Genome Browser
-
-
-
24
-
-
0004239562
-
-
Repeatmasker http://www.repeatmasker.org
-
Repeatmasker
-
-
-
25
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
16093699 10.1159/000084979
-
Jurka J Kapitonov VV Pavlicek A Klonowski P Kohany O Walichiewicz J Repbase Update, a database of eukaryotic repetitive elements Cytogenet Genome Res 2005, 110:462-467. 16093699 10.1159/000084979
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
28
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
11237011 10.1038/35057062
-
Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W Initial sequencing and analysis of the human genome Nature 2001, 409:860-921. 11237011 10.1038/35057062
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
29
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
12466850 10.1038/nature01262
-
Waterston RH Lindblad-Toh K Birney E Rogers J Abril JF Agarwal P Agarwala R Ainscough R Alexandersson M An P Initial sequencing and comparative analysis of the mouse genome Nature 2002, 420:520-562. 12466850 10.1038/nature01262
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
30
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
17495919 10.1038/nature05805
-
Mikkelsen TS Wakefield MJ Aken B Amemiya CT Chang JL Duke S Garber M Gentles AJ Goodstadt L Heger A Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences Nature 2007, 447:167-177. 17495919 10.1038/nature05805
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Amemiya, C.T.4
Chang, J.L.5
Duke, S.6
Garber, M.7
Gentles, A.J.8
Goodstadt, L.9
Heger, A.10
-
31
-
-
0037250168
-
The UCSC Genome Browser Database
-
12519945 10.1093/nar/gkg129 165576
-
Karolchik D Baertsch R Diekhans M Furey TS Hinrichs A Lu YT Roskin KM Schwartz M Sugnet CW Thomas DJ The UCSC Genome Browser Database Nucleic Acids Res 2003, 31:51-54. 12519945 10.1093/nar/gkg129 165576
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 51-54
-
-
Karolchik, D.1
Baertsch, R.2
Diekhans, M.3
Furey, T.S.4
Hinrichs, A.5
Lu, Y.T.6
Roskin, K.M.7
Schwartz, M.8
Sugnet, C.W.9
Thomas, D.J.10
-
32
-
-
0141815478
-
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
-
14500911 10.1073/pnas.1932072100 208784
-
Kent WJ Baertsch R Hinrichs A Miller W Haussler D Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes Proc Natl Acad Sci USA 2003, 100:11484-11489. 14500911 10.1073/ pnas.1932072100 208784
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11484-11489
-
-
Kent, W.J.1
Baertsch, R.2
Hinrichs, A.3
Miller, W.4
Haussler, D.5
-
33
-
-
33846039019
-
Ensembl 2007
-
17148474 10.1093/nar/gkl996 1761443
-
Hubbard TJ Aken BL Beal K Ballester B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T Ensembl 2007 Nucleic Acids Res 2007, 35:D610-617. 17148474 10.1093/nar/gkl996 1761443
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hubbard, T.J.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
-
35
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology
-
32 Database 14681408 10.1093/nar/gkh021 308756
-
Camon E Magrane M Barrell D Lee V Dimmer E Maslen J Binns D Harte N Lopez R Apweiler R The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology Nucleic Acids Res 2004 32 Database D262-266. 14681408 10.1093/nar/gkh021 308756
-
(2004)
Nucleic Acids Res
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
36
-
-
0346801873
-
The Gene Ontology (GO) database and informatics resource
-
14681407 10.1093/nar/gkh066 308770
-
Harris MA Clark J Ireland A Lomax J Ashburner M Foulger R Eilbeck K Lewis S Marshall B Mungall C The Gene Ontology (GO) database and informatics resource Nucleic Acids Res 2004 32 D258-261. 14681407 10.1093/nar/gkh066 308770
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Harris, M.A.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
-
38
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
16024819 10.1101/gr.3715005 1182216
-
Siepel A Bejerano G Pedersen JS Hinrichs AS Hou M Rosenbloom K Clawson H Spieth J Hillier LW Richards S Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Genome Res 2005, 15:1034-1050. 16024819 10.1101/gr.3715005 1182216
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
|