-
1
-
-
33750312968
-
DnaA: controlling the initiation of bacterial DNA replication and more
-
Kaguni J.M. DnaA: controlling the initiation of bacterial DNA replication and more. Annu. Rev. Microbiol. 60 (2006) 351-375
-
(2006)
Annu. Rev. Microbiol.
, vol.60
, pp. 351-375
-
-
Kaguni, J.M.1
-
2
-
-
0013371151
-
Chromosome replication and segregation
-
Sonenshein A.L., Hoch J.A., and Losick R. (Eds), ASM Press, Washington, DC
-
Lemon K.P., Moriya S., Ogasawara N., and Grossman A.D. Chromosome replication and segregation. In: Sonenshein A.L., Hoch J.A., and Losick R. (Eds). Bacillus subtilis and Its Closest Relatives (2002), ASM Press, Washington, DC 73-86
-
(2002)
Bacillus subtilis and Its Closest Relatives
, pp. 73-86
-
-
Lemon, K.P.1
Moriya, S.2
Ogasawara, N.3
Grossman, A.D.4
-
3
-
-
0026777126
-
Prokaryotic DNA replication
-
Marians K.J. Prokaryotic DNA replication. Annu. Rev. Biochem. 61 (1992) 673-719
-
(1992)
Annu. Rev. Biochem.
, vol.61
, pp. 673-719
-
-
Marians, K.J.1
-
4
-
-
33745192288
-
Origin inactivation in bacterial DNA replication control
-
Paulsson J., and Chattoraj D.K. Origin inactivation in bacterial DNA replication control. Mol. Microbiol. 61 (2006) 9-15
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 9-15
-
-
Paulsson, J.1
Chattoraj, D.K.2
-
5
-
-
0033786801
-
Structure and function of hexameric helicases
-
Patel S.S., and Picha K.M. Structure and function of hexameric helicases. Annu. Rev. Biochem. 69 (2000) 651-697
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 651-697
-
-
Patel, S.S.1
Picha, K.M.2
-
6
-
-
0033988501
-
Role of PriA in replication fork reactivation in Escherichia coli
-
Sandler S.J., and Marians K.J. Role of PriA in replication fork reactivation in Escherichia coli. J. Bacteriol. 182 (2000) 9-13
-
(2000)
J. Bacteriol.
, vol.182
, pp. 9-13
-
-
Sandler, S.J.1
Marians, K.J.2
-
7
-
-
0029003406
-
Primosome assembly site in Bacillus subtilis
-
Bruand C., Ehrlich S.D., and Janniere L. Primosome assembly site in Bacillus subtilis. EMBO J. 14 (1995) 2642-2650
-
(1995)
EMBO J.
, vol.14
, pp. 2642-2650
-
-
Bruand, C.1
Ehrlich, S.D.2
Janniere, L.3
-
8
-
-
0035725265
-
DnaB, DnaD and DnaI proteins are components of the Bacillus subtilis replication restart primosome
-
Bruand C., Farache M., McGovern S., Ehrlich S.D., and Polard P. DnaB, DnaD and DnaI proteins are components of the Bacillus subtilis replication restart primosome. Mol. Microbiol. 42 (2001) 245-255
-
(2001)
Mol. Microbiol.
, vol.42
, pp. 245-255
-
-
Bruand, C.1
Farache, M.2
McGovern, S.3
Ehrlich, S.D.4
Polard, P.5
-
9
-
-
0028969032
-
Nucleotide sequence of the Bacillus subtilis dnaD gene
-
Bruand C., Sorokin A., Serror P., and Ehrlich S.D. Nucleotide sequence of the Bacillus subtilis dnaD gene. Microbiology 141 (1995) 321-322
-
(1995)
Microbiology
, vol.141
, pp. 321-322
-
-
Bruand, C.1
Sorokin, A.2
Serror, P.3
Ehrlich, S.D.4
-
10
-
-
3042538224
-
Identification of temperature-sensitive dnaD mutants of Staphylococcus aureus that are defective in chromosomal DNA replication
-
Li Y., Kurokawa K., Matsuo M., Fukuhara N., Murakami K., and Sekimizu K. Identification of temperature-sensitive dnaD mutants of Staphylococcus aureus that are defective in chromosomal DNA replication. Mol. Genet. Genomics 271 (2004) 447-457
-
(2004)
Mol. Genet. Genomics
, vol.271
, pp. 447-457
-
-
Li, Y.1
Kurokawa, K.2
Matsuo, M.3
Fukuhara, N.4
Murakami, K.5
Sekimizu, K.6
-
11
-
-
0035108406
-
DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication
-
Ishigo-Oka D., Ogasawara N., and Moriya S. DnaD protein of Bacillus subtilis interacts with DnaA, the initiator protein of replication. J. Bacteriol. 183 (2001) 2148-2150
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2148-2150
-
-
Ishigo-Oka, D.1
Ogasawara, N.2
Moriya, S.3
-
12
-
-
0035824676
-
Early steps of Bacillus subtilis primosome assembly
-
Marsin S., McGovern S., Ehrlich S.D., Bruand C., and Polard P. Early steps of Bacillus subtilis primosome assembly. J. Biol. Chem. 276 (2001) 45818-45825
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 45818-45825
-
-
Marsin, S.1
McGovern, S.2
Ehrlich, S.D.3
Bruand, C.4
Polard, P.5
-
13
-
-
0842295026
-
Nucleotide sequence of Bacillus subtilis dnaB: a gene essential for DNA replication initiation and membrane attachment
-
Hoshino T., McKenzie T., Schmidt S., Tanaka T., and Sueoka N. Nucleotide sequence of Bacillus subtilis dnaB: a gene essential for DNA replication initiation and membrane attachment. Proc. Natl. Acad. Sci. USA 84 (1987) 653-657
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 653-657
-
-
Hoshino, T.1
McKenzie, T.2
Schmidt, S.3
Tanaka, T.4
Sueoka, N.5
-
14
-
-
3042548131
-
Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis
-
Rokop M.E., Auchtung J.M., and Grossman A.D. Control of DNA replication initiation by recruitment of an essential initiation protein to the membrane of Bacillus subtilis. Mol. Microbiol. 52 (2004) 1757-1767
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 1757-1767
-
-
Rokop, M.E.1
Auchtung, J.M.2
Grossman, A.D.3
-
15
-
-
33750983641
-
Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading Bacillus subtilis
-
Ioannou C., Schaeffer P.M., Dixon N.E., and Soultanas P. Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading Bacillus subtilis. Nucleic Acids Res. 34 (2006) 5247-5258
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5247-5258
-
-
Ioannou, C.1
Schaeffer, P.M.2
Dixon, N.E.3
Soultanas, P.4
-
16
-
-
33847337926
-
Loading a ring: structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase
-
Nunez-Ramirez R., Velten M., Rivas G., Polard P., Carazo J.M., and Donate L.E. Loading a ring: structure of the Bacillus subtilis DnaB protein, a co-loader of the replicative helicase. J. Mol. Biol. 367 (2007) 764-769
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 764-769
-
-
Nunez-Ramirez, R.1
Velten, M.2
Rivas, G.3
Polard, P.4
Carazo, J.M.5
Donate, L.E.6
-
17
-
-
0037082430
-
A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus
-
Soultanas P. A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus. Nucleic Acids Res. 30 (2002) 966-974
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 966-974
-
-
Soultanas, P.1
-
18
-
-
0038637844
-
A two-protein strategy for the functional loading of a cellular replicative DNA helicase
-
Velten M., McGovern S., Marsin S., Ehrlich S.D., Noirot P., and Polard P. A two-protein strategy for the functional loading of a cellular replicative DNA helicase. Mol. Cell 11 (2003) 1009-1020
-
(2003)
Mol. Cell
, vol.11
, pp. 1009-1020
-
-
Velten, M.1
McGovern, S.2
Marsin, S.3
Ehrlich, S.D.4
Noirot, P.5
Polard, P.6
-
19
-
-
14544302666
-
Functional interplay between the Bacillus subtilis DnaD and DnaB proteins essential for initiation and re-initiation of DNA replication
-
Bruand C., Velten M., McGovern S., Marsin S., Serena C., Ehrlich S.D., and Polard P. Functional interplay between the Bacillus subtilis DnaD and DnaB proteins essential for initiation and re-initiation of DNA replication. Mol. Microbiol. 55 (2005) 1138-1150
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 1138-1150
-
-
Bruand, C.1
Velten, M.2
McGovern, S.3
Marsin, S.4
Serena, C.5
Ehrlich, S.D.6
Polard, P.7
-
20
-
-
0034101584
-
Control of initiation of sporulation by replication initiation genes in Bacillus subtilis
-
Lemon K.P., Kurtser I., Wu J., and Grossman A.D. Control of initiation of sporulation by replication initiation genes in Bacillus subtilis. J. Bacteriol. 182 (2000) 2989-2991
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2989-2991
-
-
Lemon, K.P.1
Kurtser, I.2
Wu, J.3
Grossman, A.D.4
-
21
-
-
33746640515
-
The Bacillus subtilis primosomal protein DnaD untwists supercoiled DNA
-
Zhang W., Allen S., Roberts C.J., and Soultanas P. The Bacillus subtilis primosomal protein DnaD untwists supercoiled DNA. J. Bacteriol. 188 (2006) 5487-5493
-
(2006)
J. Bacteriol.
, vol.188
, pp. 5487-5493
-
-
Zhang, W.1
Allen, S.2
Roberts, C.J.3
Soultanas, P.4
-
22
-
-
22044451587
-
The Bacillus subtilis DnaD and DnaB proteins exhibit different DNA remodelling activities
-
Zhang W., Carneiro M.J., Turner I.J., Allen S., Roberts C.J., and Soultanas P. The Bacillus subtilis DnaD and DnaB proteins exhibit different DNA remodelling activities. J. Mol. Biol. 351 (2005) 66-75
-
(2005)
J. Mol. Biol.
, vol.351
, pp. 66-75
-
-
Zhang, W.1
Carneiro, M.J.2
Turner, I.J.3
Allen, S.4
Roberts, C.J.5
Soultanas, P.6
-
23
-
-
8844266092
-
The Bacillus subtilis DnaD protein: a putative link between DNA remodelling and initiation of DNA replication
-
Turner I.J., Scott D.J., Allen S., Roberts C.J., and Soultanas P. The Bacillus subtilis DnaD protein: a putative link between DNA remodelling and initiation of DNA replication. FEBS Lett. 577 (2004) 460-464
-
(2004)
FEBS Lett.
, vol.577
, pp. 460-464
-
-
Turner, I.J.1
Scott, D.J.2
Allen, S.3
Roberts, C.J.4
Soultanas, P.5
-
24
-
-
33646431990
-
The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains
-
Carneiro M.J., Zhang W., Ioannou C., Scott D.J., Allen S., Roberts C.J., and Soultanas P. The DNA-remodelling activity of DnaD is the sum of oligomerization and DNA-binding activities on separate domains. Mol. Microbiol. 60 (2006) 917-924
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 917-924
-
-
Carneiro, M.J.1
Zhang, W.2
Ioannou, C.3
Scott, D.J.4
Allen, S.5
Roberts, C.J.6
Soultanas, P.7
-
25
-
-
0021346918
-
Protein HU in the enzymatic replication of the chromosomal origin of E. coli
-
Dixon N.E., and Kornberg A. Protein HU in the enzymatic replication of the chromosomal origin of E. coli. Proc. Natl. Acad. Sci. USA 81 (1984) 424-428
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 424-428
-
-
Dixon, N.E.1
Kornberg, A.2
-
26
-
-
0026463867
-
Opening of the replication origin of E. coli by DnaA protein with HU or IHF
-
Hwang D.S., and Kornberg A. Opening of the replication origin of E. coli by DnaA protein with HU or IHF. J. Biol. Chem. 267 (1992) 23083-23086
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 23083-23086
-
-
Hwang, D.S.1
Kornberg, A.2
-
27
-
-
0031555485
-
Complexes at the replication of B. subtilis with homologous and heterologous DnaA protein
-
Krause M., Ruckert B., Lurz R., and Messer W. Complexes at the replication of B. subtilis with homologous and heterologous DnaA protein. J. Mol. Biol. 274 (1997) 365-380
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 365-380
-
-
Krause, M.1
Ruckert, B.2
Lurz, R.3
Messer, W.4
-
28
-
-
0028575868
-
Functions of histone-like proteins in the initiation of DNA replication at oriC of Escherichia coli
-
Roth A., Urmoneit B., and Messer W. Functions of histone-like proteins in the initiation of DNA replication at oriC of Escherichia coli. Biochimie 76 (1999) 917-923
-
(1999)
Biochimie
, vol.76
, pp. 917-923
-
-
Roth, A.1
Urmoneit, B.2
Messer, W.3
-
30
-
-
0029797932
-
The nucleoid protein H-NS facilitates chromosome DNA replication in E. coli dnaA mutants
-
Katayama T., Takata M., and Sekimizu K. The nucleoid protein H-NS facilitates chromosome DNA replication in E. coli dnaA mutants. J. Bacteriol. 178 (1996) 5790-5792
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5790-5792
-
-
Katayama, T.1
Takata, M.2
Sekimizu, K.3
-
31
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm L., and Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233 (1993) 123-138
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
33
-
-
14244256059
-
Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons
-
Safo M.K., Zhao Q., Ko T.P., Musayev F.N., Robinson H., Scarsdale N., et al. Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons. J. Bacteriol. 187 (2005) 1833-1844
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1833-1844
-
-
Safo, M.K.1
Zhao, Q.2
Ko, T.P.3
Musayev, F.N.4
Robinson, H.5
Scarsdale, N.6
-
34
-
-
0033546005
-
Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA
-
Schwartz T., Rould M.A., Lowenhaupt K., Herbert A., and Rich A. Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA. Science 284 (1999) 1841-1845
-
(1999)
Science
, vol.284
, pp. 1841-1845
-
-
Schwartz, T.1
Rould, M.A.2
Lowenhaupt, K.3
Herbert, A.4
Rich, A.5
-
35
-
-
0033019592
-
Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex
-
Jin C., Marsden I., Chen X., and Liao X. Dynamic DNA contacts observed in the NMR structure of winged helix protein-DNA complex. J. Mol. Biol. 289 (1999) 683-690
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 683-690
-
-
Jin, C.1
Marsden, I.2
Chen, X.3
Liao, X.4
-
36
-
-
4544255838
-
Structure of the ESCRT-II endosomal trafficking complex
-
Hierro A., Sun J., Rusnak A.S., Kim J., Prag G., Emr S.D., and Hurley J.H. Structure of the ESCRT-II endosomal trafficking complex. Nature 431 (2004) 221-225
-
(2004)
Nature
, vol.431
, pp. 221-225
-
-
Hierro, A.1
Sun, J.2
Rusnak, A.S.3
Kim, J.4
Prag, G.5
Emr, S.D.6
Hurley, J.H.7
-
37
-
-
5044245523
-
ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes
-
Teo H., Perisic O., Gonzalez B., and Williams R.L. ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes. Dev. Cell 7 (2004) 559-569
-
(2004)
Dev. Cell
, vol.7
, pp. 559-569
-
-
Teo, H.1
Perisic, O.2
Gonzalez, B.3
Williams, R.L.4
-
38
-
-
0034708205
-
Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding
-
Gajiwala K.S., Chen H., Cornille F., Roques B.P., Reith W., Mach B., and Burley S.K. Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding. Nature 403 (2000) 916-921
-
(2000)
Nature
, vol.403
, pp. 916-921
-
-
Gajiwala, K.S.1
Chen, H.2
Cornille, F.3
Roques, B.P.4
Reith, W.5
Mach, B.6
Burley, S.K.7
-
39
-
-
0030039296
-
PROMOTIF-a program to identify and analyze structural motifs in proteins
-
Hutchinson E.G., and Thornton J.M. PROMOTIF-a program to identify and analyze structural motifs in proteins. Protein Sci. 5 (1996) 212-220
-
(1996)
Protein Sci.
, vol.5
, pp. 212-220
-
-
Hutchinson, E.G.1
Thornton, J.M.2
-
40
-
-
0027339355
-
Accommodating sequence changes in beta-hairpins in proteins
-
Sibanda B.L., and Thornton J.M. Accommodating sequence changes in beta-hairpins in proteins. J. Mol. Biol. 229 (1993) 428-447
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 428-447
-
-
Sibanda, B.L.1
Thornton, J.M.2
-
43
-
-
0004235822
-
-
McPherson M.J., Quirke P., and Taylor G.R. (Eds), IRL Press, Oxford, UK
-
Clackson T., Gussow D., and Jones P.T. In: McPherson M.J., Quirke P., and Taylor G.R. (Eds). PCR-A Practical Approach (1991), IRL Press, Oxford, UK
-
(1991)
PCR-A Practical Approach
-
-
Clackson, T.1
Gussow, D.2
Jones, P.T.3
-
44
-
-
33847098779
-
Crystallization and X-ray diffraction analysis of the DNA-remodelling protein DnaD from Bacillus subtilis
-
Schneider S., Carneiro M.J.V.M., Ioannou C., Soultanas P., and Paoli M. Crystallization and X-ray diffraction analysis of the DNA-remodelling protein DnaD from Bacillus subtilis. Acta Crystallogr., Sect. F F63 (2007) 110-113
-
(2007)
Acta Crystallogr., Sect. F
, vol.F63
, pp. 110-113
-
-
Schneider, S.1
Carneiro, M.J.V.M.2
Ioannou, C.3
Soultanas, P.4
Paoli, M.5
-
45
-
-
0025262173
-
Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three dimensional structure
-
Hendrickson W.A., Horton J.R., and LeMaster D.M. Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three dimensional structure. EMBO J. 9 (1990) 1665-1672
-
(1990)
EMBO J.
, vol.9
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
LeMaster, D.M.3
-
48
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography
-
CCP4
-
CCP4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr., Sect. D: Biol. Crystallogr. 50 (1994) 760-763
-
(1994)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
50
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
de La Fortelle E., and Bricogne G. Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods in Enzymology 276 (1997) 472-494
-
(1997)
Methods in Enzymology
, vol.276
, pp. 472-494
-
-
de La Fortelle, E.1
Bricogne, G.2
-
52
-
-
0013461295
-
Macromolecular TLS refinement in REFMAC at moderate resolutions
-
Winn M.D., Murshudov G.N., and Papiz M.Z. Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods Enzymol. 374 (2003) 300-321
-
(2003)
Methods Enzymol.
, vol.374
, pp. 300-321
-
-
Winn, M.D.1
Murshudov, G.N.2
Papiz, M.Z.3
-
54
-
-
33645158291
-
TLSMD web server for the generation of multi-group TLS models
-
Painter J., and Merritt E.A. TLSMD web server for the generation of multi-group TLS models. J. Appl. Crystallogr. 39 (2006) 109-111
-
(2006)
J. Appl. Crystallogr.
, vol.39
, pp. 109-111
-
-
Painter, J.1
Merritt, E.A.2
-
55
-
-
3242886389
-
MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes
-
Davis I.W., Murray L.W., Richardson J.S., and Richardson D.C. MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res. 32 (2004) W615-W619
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Davis, I.W.1
Murray, L.W.2
Richardson, J.S.3
Richardson, D.C.4
-
56
-
-
0037441653
-
Structure validation by Calpha geometry: phi, psi and Cbeta deviation
-
Lovell S.C., Davis I.W., Arendall III W.B., de Bakker P.I., Word J.M., Prisant M.G., et al. Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins 50 (2003) 437-450
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
de Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
-
57
-
-
0028922586
-
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
-
Wallace A.C., Laskowski R.A., and Thornton J.M. LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions. Protein Eng. 8 (1995) 127-134
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(1995)
Protein Eng.
, vol.8
, pp. 127-134
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Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
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