메뉴 건너뛰기




Volumn 94, Issue 4, 2008, Pages 1203-1215

Decoding of calcium oscillations by phosphorylation cycles: Analytic results

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; PHOSPHOTRANSFERASE;

EID: 38949098235     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1529/biophysj.107.113084     Document Type: Article
Times cited : (68)

References (58)
  • 1
    • 0032531818 scopus 로고    scopus 로고
    • Calcium-a life and death signal
    • Berridge, M. J., M. D. Bootman, and P. Lipp. 1998. Calcium-a life and death signal. Nature. 395:645-648.
    • (1998) Nature , vol.395 , pp. 645-648
    • Berridge, M.J.1    Bootman, M.D.2    Lipp, P.3
  • 2
    • 0035064074 scopus 로고    scopus 로고
    • Calcium signaling mechanisms in T-lymphocytes
    • Lewis, R. S. 2001. Calcium signaling mechanisms in T-lymphocytes. Annu. Rev. Immunol. 19:497-521.
    • (2001) Annu. Rev. Immunol , vol.19 , pp. 497-521
    • Lewis, R.S.1
  • 4
    • 0043037252 scopus 로고    scopus 로고
    • 2+/CREB/CBP- dependent gene regulation: A shared mechanism critical in long-term synaptic plasticity and neuronal survival
    • 2+/CREB/CBP- dependent gene regulation: a shared mechanism critical in long-term synaptic plasticity and neuronal survival. Cell Calcium. 34:425-130.
    • (2003) Cell Calcium , vol.34 , pp. 425-130
    • Bito, H.1    Takemoto-Kimura, S.2
  • 6
    • 24644474134 scopus 로고    scopus 로고
    • Calcium signaling in liver
    • Gaspers, L. D., and A. P. Thomas. 2005. Calcium signaling in liver. Cell Calcium. 38:329-342.
    • (2005) Cell Calcium , vol.38 , pp. 329-342
    • Gaspers, L.D.1    Thomas, A.P.2
  • 7
    • 0027364183 scopus 로고    scopus 로고
    • Schöfl, C., G. Brabant, R. D. Hesch, A. von zur Muhlen, P. H. Cobbold, and K. S. Cuthbertson. 1993. Temporal patterns of α1- receptor stimulation regulate amplitude and frequency of calcium transients. Am. J. Physiol. 265:C1030-C1036.
    • Schöfl, C., G. Brabant, R. D. Hesch, A. von zur Muhlen, P. H. Cobbold, and K. S. Cuthbertson. 1993. Temporal patterns of α1- receptor stimulation regulate amplitude and frequency of calcium transients. Am. J. Physiol. 265:C1030-C1036.
  • 8
    • 0028618302 scopus 로고
    • Oscillations of cytosolic calcium in rat chromaffin cells: Dual modulation in frequency and amplitude
    • D'Andrea, P., F. Codazzi, D. Zacchetti, J. Meldolesi, and F. Grohovaz. 1994. Oscillations of cytosolic calcium in rat chromaffin cells: dual modulation in frequency and amplitude. Biochem. Biophys. Res. Commun. 205:1264-1269.
    • (1994) Biochem. Biophys. Res. Commun , vol.205 , pp. 1264-1269
    • D'Andrea, P.1    Codazzi, F.2    Zacchetti, D.3    Meldolesi, J.4    Grohovaz, F.5
  • 10
    • 33751032385 scopus 로고    scopus 로고
    • Calcium microdomains: Organization and function
    • Berridge, M. J. 2006. Calcium microdomains: organization and function. Cell Calcium. 40:405-412.
    • (2006) Cell Calcium , vol.40 , pp. 405-412
    • Berridge, M.J.1
  • 11
    • 33644847375 scopus 로고    scopus 로고
    • 2+: Molecular determinants and functional consequences
    • 2+: molecular determinants and functional consequences. Physiol. Rev. 86: 369-408.
    • (2006) Physiol. Rev , vol.86 , pp. 369-408
    • Rizzuto, R.1    Pozzan, T.2
  • 12
    • 0032580202 scopus 로고    scopus 로고
    • Calcium oscillations increase the efficiency and specificity of gene expression
    • Dolmetsch, R. E., K. Xu, and R. S. Lewis. 1998. Calcium oscillations increase the efficiency and specificity of gene expression. Nature. 392: 933-936.
    • (1998) Nature , vol.392 , pp. 933-936
    • Dolmetsch, R.E.1    Xu, K.2    Lewis, R.S.3
  • 14
    • 0033678548 scopus 로고    scopus 로고
    • Decoding calcium signals involved in cardiac growth and function
    • Frey, N., T. A. McKinsey, and E. N. Olson. 2000. Decoding calcium signals involved in cardiac growth and function. Nat. Med. 6:1221-1227.
    • (2000) Nat. Med , vol.6 , pp. 1221-1227
    • Frey, N.1    McKinsey, T.A.2    Olson, E.N.3
  • 15
    • 33747164514 scopus 로고    scopus 로고
    • PKCα: A versatile key for decoding the cellular calcium toolkit
    • Reither, G., M. Schaefer, and P. Lipp. 2006. PKCα: a versatile key for decoding the cellular calcium toolkit. J. Cell Biol. 174:521-533.
    • (2006) J. Cell Biol , vol.174 , pp. 521-533
    • Reither, G.1    Schaefer, M.2    Lipp, P.3
  • 18
    • 0029143569 scopus 로고
    • Decoding of cytosolic calcium oscillations in the mitochondria
    • Hajnoczky, G., L. D. Robb-Gaspers, M. B. Seitz, and A. P. Thomas. 1995. Decoding of cytosolic calcium oscillations in the mitochondria. Cell. 82:415-424.
    • (1995) Cell , vol.82 , pp. 415-424
    • Hajnoczky, G.1    Robb-Gaspers, L.D.2    Seitz, M.B.3    Thomas, A.P.4
  • 22
    • 0026523113 scopus 로고
    • Protein phosphorylation driven by intracellular calcium oscillations: A kinetic analysis
    • Dupont, G., and A. Goldbeter. 1992. Protein phosphorylation driven by intracellular calcium oscillations: a kinetic analysis. Biophys. Chem. 42:257-270.
    • (1992) Biophys. Chem , vol.42 , pp. 257-270
    • Dupont, G.1    Goldbeter, A.2
  • 23
    • 0036125304 scopus 로고    scopus 로고
    • Modeling of simple and complex calcium oscillations
    • Schuster, S., M. Marhl, and T. Höfer. 2002. Modeling of simple and complex calcium oscillations. Eur. J. Biochem. 269:1333-1355.
    • (2002) Eur. J. Biochem , vol.269 , pp. 1333-1355
    • Schuster, S.1    Marhl, M.2    Höfer, T.3
  • 27
    • 0141750574 scopus 로고    scopus 로고
    • 2+ oscillations on activation of glycogen phosphorylase
    • 2+ oscillations on activation of glycogen phosphorylase. Biophys. Chem. 106:193-202.
    • (2003) Biophys. Chem , vol.106 , pp. 193-202
    • Rozi, A.1    Jia, Y.2
  • 28
    • 26844491373 scopus 로고    scopus 로고
    • Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations
    • Marhl, M., M. Perc, and S. Schuster. 2005. Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations. FEBS Lett. 579:5461-5465.
    • (2005) FEBS Lett , vol.579 , pp. 5461-5465
    • Marhl, M.1    Perc, M.2    Schuster, S.3
  • 29
    • 33845460324 scopus 로고    scopus 로고
    • Role of cascades in converting oscillatory signals into stationary step-like responses
    • Marhl, M., and V. Grubelnik. 2007. Role of cascades in converting oscillatory signals into stationary step-like responses. Biosystems. 87:58-67.
    • (2007) Biosystems , vol.87 , pp. 58-67
    • Marhl, M.1    Grubelnik, V.2
  • 30
    • 1042290530 scopus 로고    scopus 로고
    • On the encoding and decoding of calcium signals in hepatocytes
    • Larsen, A. Z., L. F. Olsen, and U. Kummer. 2004. On the encoding and decoding of calcium signals in hepatocytes. Biophys. Chem. 107:83-99.
    • (2004) Biophys. Chem , vol.107 , pp. 83-99
    • Larsen, A.Z.1    Olsen, L.F.2    Kummer, U.3
  • 31
    • 19544386343 scopus 로고    scopus 로고
    • Differential regulation of proteins by bursting calcium oscillations-a theoretical study
    • Schuster, S., B. Knoke, and M. Marhl. 2005. Differential regulation of proteins by bursting calcium oscillations-a theoretical study. Biosys-tems. 81:49-63.
    • (2005) Biosys-tems , vol.81 , pp. 49-63
    • Schuster, S.1    Knoke, B.2    Marhl, M.3
  • 32
    • 28844446613 scopus 로고    scopus 로고
    • Information processing in calcium signal transduction
    • Larsen, A. Z., and U. Kummer. 2003. Information processing in calcium signal transduction. Lect. Notes Phys. 5623:153-178.
    • (2003) Lect. Notes Phys , vol.5623 , pp. 153-178
    • Larsen, A.Z.1    Kummer, U.2
  • 33
    • 19544380768 scopus 로고    scopus 로고
    • Decoding of calcium oscillations by phosphorylation cycles
    • H. Mamitsuka, T. Smith, H. G. Holzhutter, M. Kanehisa, C. DeLisi, R. Heinrich, and S. Miyano, editors. Kyoto, Japan
    • Salazar, C., A. Politi, and T. Höfer. 2004. Decoding of calcium oscillations by phosphorylation cycles. In Proceedings of Fourth International Workshop on Bioinformatics and Systems Biology. H. Mamitsuka, T. Smith, H. G. Holzhutter, M. Kanehisa, C. DeLisi, R. Heinrich, and S. Miyano, editors. Kyoto, Japan.
    • (2004) Proceedings of Fourth International Workshop on Bioinformatics and Systems Biology
    • Salazar, C.1    Politi, A.2    Höfer, T.3
  • 35
    • 0026511940 scopus 로고
    • Pulsatile signaling in intercellular communication. Periodic stimuli are more efficient than random or chaotic signals in a model based on receptor desensitization
    • Li, Y., and A. Goldbeter. 1992. Pulsatile signaling in intercellular communication. Periodic stimuli are more efficient than random or chaotic signals in a model based on receptor desensitization. Biophys. J. 61:161-171.
    • (1992) Biophys. J , vol.61 , pp. 161-171
    • Li, Y.1    Goldbeter, A.2
  • 36
    • 0032469789 scopus 로고    scopus 로고
    • Molecular mechanisms of calmodulin's functional versatility
    • Zhang, M., and T. Yuang. 1998. Molecular mechanisms of calmodulin's functional versatility. Biochem. Cell Biol. 76:313-323.
    • (1998) Biochem. Cell Biol , vol.76 , pp. 313-323
    • Zhang, M.1    Yuang, T.2
  • 37
    • 0042203560 scopus 로고    scopus 로고
    • Obtaining site-specific calcium-binding affinities of calmodulin
    • Yang, J. J., A. Gawthrop, and Y. Ye. 2003. Obtaining site-specific calcium-binding affinities of calmodulin. Protein Pept. Lett. 10:331-345.
    • (2003) Protein Pept. Lett , vol.10 , pp. 331-345
    • Yang, J.J.1    Gawthrop, A.2    Ye, Y.3
  • 39
    • 0024397869 scopus 로고
    • Characterization of cytosolic calcium oscillations induced by phenylephrine and vasopressin in single Fura-2-loaded hepatocytes
    • Rooney, T. A., E. J. Sass, and A. P. Thomas. 1989. Characterization of cytosolic calcium oscillations induced by phenylephrine and vasopressin in single Fura-2-loaded hepatocytes. J. Biol. Chem. 264:17131-17141.
    • (1989) J. Biol. Chem , vol.264 , pp. 17131-17141
    • Rooney, T.A.1    Sass, E.J.2    Thomas, A.P.3
  • 40
    • 0016529156 scopus 로고
    • Mathematical analysis of multienzyme systems. II. Steady state and transient control
    • Heinrich, R., and T. A. Rapoport. 1975. Mathematical analysis of multienzyme systems. II. Steady state and transient control. Biosys- tems. 7:130-136.
    • (1975) Biosys- tems , vol.7 , pp. 130-136
    • Heinrich, R.1    Rapoport, T.A.2
  • 41
    • 0035449318 scopus 로고    scopus 로고
    • 2+ -Calmodulin-dependent protein kinase II in dorsal root ganglion neurons
    • 2+ -Calmodulin-dependent protein kinase II in dorsal root ganglion neurons. J. Neurosci. 21:6694-6705.
    • (2001) J. Neurosci , vol.21 , pp. 6694-6705
    • Eshete, F.1    Fields, R.D.2
  • 42
    • 19644376385 scopus 로고    scopus 로고
    • The frequencies of calcium oscillations are optimized for efficient calcium-mediated activation of Ras and the ERK/MAPK cascade
    • Kupzig, S., S. A. Walker, and P. J. Cullen. 2005. The frequencies of calcium oscillations are optimized for efficient calcium-mediated activation of Ras and the ERK/MAPK cascade. Proc. Natl. Acad. Sci. USA. 102:7577-7582.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 7577-7582
    • Kupzig, S.1    Walker, S.A.2    Cullen, P.J.3
  • 43
    • 1242277745 scopus 로고    scopus 로고
    • The parameters of guard cell calcium oscillation encodes stomatal oscillation and closure in Vicia faba
    • Li, Y., G. X. Wang, M. Xin, H. M. Yang, X. J. Wu, and T. Li. 2004. The parameters of guard cell calcium oscillation encodes stomatal oscillation and closure in Vicia faba. Plant Sci. 166:415-421.
    • (2004) Plant Sci , vol.166 , pp. 415-421
    • Li, Y.1    Wang, G.X.2    Xin, M.3    Yang, H.M.4    Wu, X.J.5    Li, T.6
  • 44
    • 0037436383 scopus 로고    scopus 로고
    • Allosteric regulation of the transcription factor NFAT1 by multiple phosphorylation sites: A mathematical analysis
    • Salazar, C., and T. Höfer. 2003. Allosteric regulation of the transcription factor NFAT1 by multiple phosphorylation sites: a mathematical analysis. J. Mol. Biol. 327:31-45.
    • (2003) J. Mol. Biol , vol.327 , pp. 31-45
    • Salazar, C.1    Höfer, T.2
  • 45
    • 0032582525 scopus 로고    scopus 로고
    • Protein kinase C as a molecularmachine for decoding calcium and diacylglycerol signals
    • Oancea, E., and T. Meyer. 1998. Protein kinase C as a molecularmachine for decoding calcium and diacylglycerol signals. Cell. 95:307-318.
    • (1998) Cell , vol.95 , pp. 307-318
    • Oancea, E.1    Meyer, T.2
  • 47
    • 33644872121 scopus 로고    scopus 로고
    • 2+ signals through the modulation of Ras signaling
    • 2+ signals through the modulation of Ras signaling. Curr. Opin. Cell Biol. 18:157-161.
    • (2006) Curr. Opin. Cell Biol , vol.18 , pp. 157-161
    • Cullen, P.J.1
  • 48
    • 33646153534 scopus 로고    scopus 로고
    • 2+ oscillations: Frequency encoding and identification of underlying feedbacks
    • 2+ oscillations: frequency encoding and identification of underlying feedbacks. Biophys. J. 90:3120-3133.
    • (2006) Biophys. J , vol.90 , pp. 3120-3133
    • Politi, A.1    Gaspers, L.D.2    Thomas, A.P.3    Hofer, T.4
  • 49
    • 33846820252 scopus 로고    scopus 로고
    • Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein-protein interactions
    • Salazar, C., and T. Hofer. 2007. Versatile regulation of multisite protein phosphorylation by the order of phosphate processing and protein-protein interactions. FEBS J. 274:1046-1061.
    • (2007) FEBS J , vol.274 , pp. 1046-1061
    • Salazar, C.1    Hofer, T.2
  • 50
    • 0027310309 scopus 로고
    • Proteolytic fragments of phosphoinositide-specific phospholipase Cδ1. Catalytic and membrane binding properties
    • Cifuentes, M. E., L. Honkanen, and M. J. Rebecchi. 1993. Proteolytic fragments of phosphoinositide-specific phospholipase Cδ1. Catalytic and membrane binding properties. J. Biol. Chem. 268:11586-11593.
    • (1993) J. Biol. Chem , vol.268 , pp. 11586-11593
    • Cifuentes, M.E.1    Honkanen, L.2    Rebecchi, M.J.3
  • 51
    • 0027389760 scopus 로고
    • Hydrolysis of short acyl chain inositol lipids by phospholipase Cδ 1
    • Rebecchi, M. J., R. Eberhardt, T. Delaney, S. Ali, and R. Bittman. 1993. Hydrolysis of short acyl chain inositol lipids by phospholipase Cδ 1. J. Biol. Chem. 268:1735-1741.
    • (1993) J. Biol. Chem , vol.268 , pp. 1735-1741
    • Rebecchi, M.J.1    Eberhardt, R.2    Delaney, T.3    Ali, S.4    Bittman, R.5
  • 53
    • 0025823438 scopus 로고
    • Calcium binding to calmodulin and its globular domains
    • Linse, S., A. Helmersson, and S. Forsen. 1991. Calcium binding to calmodulin and its globular domains. J. Biol. Chem. 266:8050-8054.
    • (1991) J. Biol. Chem , vol.266 , pp. 8050-8054
    • Linse, S.1    Helmersson, A.2    Forsen, S.3
  • 54
    • 0041836230 scopus 로고    scopus 로고
    • 2+ /calmodulin-dependent protein kinase II-protein phosphatase 1 switch facilitates specificity in postsynaptic calcium signaling
    • 2+ /calmodulin-dependent protein kinase II-protein phosphatase 1 switch facilitates specificity in postsynaptic calcium signaling. Proc. Natl. Acad. Sci. USA. 100:10512-10517.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10512-10517
    • Bradshaw, J.M.1    Kubota, Y.2    Meyer, T.3    Schulman, H.4
  • 55
    • 0028222312 scopus 로고
    • Dual calcium ion regulation of calcineurin by calmodulin and calcineurin B
    • Stemmer, P. M., and C. B. Klee. 1994. Dual calcium ion regulation of calcineurin by calmodulin and calcineurin B. Biochemistry. 33:6859-6866.
    • (1994) Biochemistry , vol.33 , pp. 6859-6866
    • Stemmer, P.M.1    Klee, C.B.2
  • 57
    • 0015814772 scopus 로고
    • The initial velocities of calcium uptake by rat liver mitochondria
    • Vinogradov, A., and A. Scarpa. 1973. The initial velocities of calcium uptake by rat liver mitochondria. J. Biol. Chem. 248:5527-5531.
    • (1973) J. Biol. Chem , vol.248 , pp. 5527-5531
    • Vinogradov, A.1    Scarpa, A.2
  • 58
    • 0034116677 scopus 로고    scopus 로고
    • Models of calmodulin trapping and CaM kinase II activation in a dendritic spine
    • Holmes, W. R. 2000. Models of calmodulin trapping and CaM kinase II activation in a dendritic spine. J. Comput. Neurosci. 8:65-85.
    • (2000) J. Comput. Neurosci , vol.8 , pp. 65-85
    • Holmes, W.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.