Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations

FEBS Letters

Volumn 579, Issue 25, 2005, Pages 5461-5465

  Marhl, Marko ^a   Perc, Matjaž ^a   Schuster, Stefan ^b  

^a UNIVERSITY OF MARIBOR   (Slovenia)

^b FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

Band pass filter; Bow tie structure; Calcium oscillations; Signalling cascade

Indexed keywords

PROTEIN;

ARTICLE; CALCIUM SIGNALING; CELL FUNCTION; FILTER; FILTRATION; MATHEMATICAL MODEL; OSCILLATION; PRIORITY JOURNAL; REGULATORY MECHANISM; TIME;

CALCIUM SIGNALING; COMPUTER SIMULATION; MODELS, BIOLOGICAL; PROTEINS; TIME FACTORS;

EID: 26844491373     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2005.09.007     Document Type: Article

References (28)

1. A.P. Arkin Signal processing by biochemical reaction networks J. Walleczek Self-Organized Biodynamics and Nonlinear Control 2000 Cambridge University Press Cambridge, UK 112 144
2. M. Samoilov, A. Arkin, and J. Ross Signal processing by simple chemical systems J. Phys. Chem. A 106 2002 10205 10221
3. R. Heinrich, B.G. Neel, and T.A. Rapoport Mathematical models of protein kinase signal transduction Mol. Cell. 9 2002 957 970
4. J. Nakabayashi, and A. Sasaki Optimal phosphorylation step number of intracellular signal-transduction pathway J. Theor. Biol. 233 2005 413 421
5. M. Csete, and J. Doyle Bow ties, metabolism and disease Trends Biotechnol. 22 2004 446 450
6. H.W. Ma, and A.P. Zeng The connectivity structure, giant strong component and centrality of metabolic networks Bioinformatics 19 2003 1423 1430
7. A. Klein, B. Steiner, and A. Steil Known and novel diversity approaches as a powerful means to enhance the performance of cellular mobile radio systems IEEE J. Sel. Area. Comm. 14 1996 1784 1795
8. M.J. Berridge, M.D. Bootman, and P. Lipp Calcium - a life and death signal Nature 395 1998 645 648
9. S. Schuster, M. Marhl, and T. Höfer Modelling of simple and complex calcium oscillations. From single-cell responses to intercellular signalling Eur. J. Biochem. 269 2002 1333 1355
10. 2+ signalling Adv. Phys. 53 2004 255 440
11. 2+ signals in cytosol and nucleus in pancreatic beta-cells Diabetes 53 2004 S92 S95
12. 2+ oscillations promote APC/C-dependent cyclin B1 degradation during metaphase arrest and completion of meiosis in fertilizing mouse eggs Curr. Biol. 12 2002 746 750
13. G.J. Allen, S.P. Chu, C.L. Harrington, K. Schumacher, T. Hoffman, Y.Y. Tang, E. Grill, and J.I. Schroeder A defined range of guard cell calcium oscillation parameters encodes stomatal movements Nature 411 2001 1053 1057
14. Y. Li, G.-X. Wang, M. Xin, H.-M. Yang, X.-J. Wu, and T. Li The parameters of guard cell calcium oscillation encodes stomatal oscillation and closure in Vicia faba Plant Sci. 166 2004 415 421
15. 2+ oscillations Science 279 1998 227 230
16. Y.-X. Li, and A. Goldbeter Pulsatile signaling in intercellular communication Biophys. J. 61 1992 161 171
17. S. Schuster, B. Knoke, and M. Marhl Differential regulation of proteins by bursting calcium oscillations - a theoretical study BioSystems 81 2005 49 63
18. 2+ oscillations: a simple model Cell Calcium 34 2003 485 497
19. E. Yeger-Lotem, S. Sattath, N. Kashtan, S. Itzkovitz, R. Milo, R.Y. Pinter, U. Alon, and H. Margalit Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction Proc. Natl. Acad. Sci. USA 101 2004 5934 5939
20. D.M. Wolf, and A.P. Arkin Motifs, modules and games in bacteria Curr. Opin. Microbiol. 6 2003 125 134
21. R. Alves, and M.A. Savageau Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function Mol. Microbiol. 48 2003 25 51
22. L.E. Ulrich, E.V. Koonin, and I.B. Zhulin One-component systems dominate signal transduction in prokaryotes Trends Microbiol. 13 2005 52 56
23. 2+ signal? Trends Plant Sci. 5 2000 154 159
24. 2+ signalling systems Trends Plant Sci. 3 1998 32 36
25. J.E. Dumont, S. Dremier, I. Pirson, and C. Maenhaut Cross signaling, cell specificity, and physiology Am. J. Physiol. Cell Physiol. 283 2002 C2 C28
26. U.S. Bhalla, and R. Iyengar Emergent properties of networks of biological signaling pathways Science 283 1999 381 387
27. C.V. Rao, and A.P. Arkin Control motifs for intracellular regulatory networks Annu. Rev. Biomed. Eng. 3 2001 391 419
28. H.M. Sauro, and B.N. Kholodenko Quantitative analysis of signaling networks Prog. Biophys. Mol. Biol. 86 2004 5 43