-
1
-
-
0037764668
-
Aryl hydrocarbon receptor gene silencing with small inhibitory RNA differentially modulates Ah-responsiveness in MCF-7 and HepG2 cancer cells
-
Abdelrahim M., Smith III R., et al. Aryl hydrocarbon receptor gene silencing with small inhibitory RNA differentially modulates Ah-responsiveness in MCF-7 and HepG2 cancer cells. Molecular Pharmacology 63 6 (2003) 1373-1381
-
(2003)
Molecular Pharmacology
, vol.63
, Issue.6
, pp. 1373-1381
-
-
Abdelrahim, M.1
Smith III, R.2
-
2
-
-
0034282316
-
Global optimization of mixed-integer nonlinear problems
-
Adjiman C.S., Androulakis I.P., et al. Global optimization of mixed-integer nonlinear problems. Aiche Journal 46 9 (2000) 1769-1797
-
(2000)
Aiche Journal
, vol.46
, Issue.9
, pp. 1769-1797
-
-
Adjiman, C.S.1
Androulakis, I.P.2
-
3
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh A.A., Eisen M.B., et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403 6769 (2000) 503-511
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
-
4
-
-
0035893766
-
Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile
-
Allander S.V., Nupponen N.N., et al. Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile. Cancer Research 61 24 (2001) 8624-8628
-
(2001)
Cancer Research
, vol.61
, Issue.24
, pp. 8624-8628
-
-
Allander, S.V.1
Nupponen, N.N.2
-
5
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon U., Barkai N., et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proceeding of the National Academy of Sciences of the United States of America 96 12 (1999) 6745-6750
-
(1999)
Proceeding of the National Academy of Sciences of the United States of America
, vol.96
, Issue.12
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
-
6
-
-
0033990794
-
Regulation of metallothionein gene expression by oxidative stress and metal ions
-
Andrews G.K. Regulation of metallothionein gene expression by oxidative stress and metal ions. Biochemical Pharmacology 59 1 (2000) 95-104
-
(2000)
Biochemical Pharmacology
, vol.59
, Issue.1
, pp. 95-104
-
-
Andrews, G.K.1
-
7
-
-
15744376696
-
Selecting maximally informative genes
-
Androulakis I.P. Selecting maximally informative genes. Computers & Chemical Engineering 29 3 (2005) 535-546
-
(2005)
Computers & Chemical Engineering
, vol.29
, Issue.3
, pp. 535-546
-
-
Androulakis, I.P.1
-
8
-
-
2942520985
-
Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma
-
Baer C., Nees M., et al. Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma. International Journal of Cancer 110 5 (2004) 687-694
-
(2004)
International Journal of Cancer
, vol.110
, Issue.5
, pp. 687-694
-
-
Baer, C.1
Nees, M.2
-
9
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi A.L., and Oltvai Z.N. Network biology: Understanding the cell's functional organization. Nature Reviews Genetics 5 2 (2004) 101-113
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
10
-
-
84984934346
-
Gene expression informatics-it's all in your mine
-
Bassett Jr. D.E., Eisen M.B., et al. Gene expression informatics-it's all in your mine. Nature Genetics 21 Suppl. 1 (1999) 51-55
-
(1999)
Nature Genetics
, vol.21
, Issue.SUPPL. 1
, pp. 51-55
-
-
Bassett Jr., D.E.1
Eisen, M.B.2
-
12
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M., Meltzer P., et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406 6795 (2000) 536-540
-
(2000)
Nature
, vol.406
, Issue.6795
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
-
13
-
-
38849194544
-
-
Boscolo, R., & Sabatti, C., et al. (2004). Reconstructing hidden regulatory layers by network component analysis: Theory and application, http://www.ee.ucla.edu/%7Ericcardo/NCA/Boscolo-TCBB-0516.pdf.
-
Boscolo, R., & Sabatti, C., et al. (2004). Reconstructing hidden regulatory layers by network component analysis: Theory and application, http://www.ee.ucla.edu/%7Ericcardo/NCA/Boscolo-TCBB-0516.pdf.
-
-
-
-
14
-
-
0032919458
-
Options available - from start to finish - for obtaining expression data by microarray
-
Bowtell D.D. Options available - from start to finish - for obtaining expression data by microarray. Nature Genetics 21 Suppl. 1 (1999) 25-32
-
(1999)
Nature Genetics
, vol.21
, Issue.SUPPL. 1
, pp. 25-32
-
-
Bowtell, D.D.1
-
15
-
-
23944510728
-
Feature selection for consistent biclustering via fractinal 0-1 programming
-
Busygin S., Prokopyev O.A., et al. Feature selection for consistent biclustering via fractinal 0-1 programming. Journal of Combinatorial Optimization 10 1 (2005) 7-21
-
(2005)
Journal of Combinatorial Optimization
, vol.10
, Issue.1
, pp. 7-21
-
-
Busygin, S.1
Prokopyev, O.A.2
-
16
-
-
3343024743
-
Molecular mechanisms of CD99-induced caspase-independent cell death and cell-cell adhesion in Ewing's sarcoma cells: Actin and zyxin as key intracellular mediators
-
Cerisano V., Aalto Y., et al. Molecular mechanisms of CD99-induced caspase-independent cell death and cell-cell adhesion in Ewing's sarcoma cells: Actin and zyxin as key intracellular mediators. Oncogene 23 33 (2004) 5664-5674
-
(2004)
Oncogene
, vol.23
, Issue.33
, pp. 5664-5674
-
-
Cerisano, V.1
Aalto, Y.2
-
17
-
-
33744948050
-
Role of GAC63 in transcriptional activation mediated by the aryl hydrocarbon receptor
-
Chen Y.H., Beischlag T.V., et al. Role of GAC63 in transcriptional activation mediated by the aryl hydrocarbon receptor. Journal of Biological Chemistry 281 18 (2006) 12242-12247
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.18
, pp. 12242-12247
-
-
Chen, Y.H.1
Beischlag, T.V.2
-
18
-
-
0032608229
-
Making and reading microarrays
-
Cheung V.G., Morley M., et al. Making and reading microarrays. Nature Genetics 21 Suppl. 1 (1999) 15-19
-
(1999)
Nature Genetics
, vol.21
, Issue.SUPPL. 1
, pp. 15-19
-
-
Cheung, V.G.1
Morley, M.2
-
19
-
-
0036126862
-
Multivariate approach for selecting sets of differentially expressed genes
-
Chilingaryan A., Gevorgyan N., et al. Multivariate approach for selecting sets of differentially expressed genes. Mathematical Biosciences 176 1 (2002) 59-69
-
(2002)
Mathematical Biosciences
, vol.176
, Issue.1
, pp. 59-69
-
-
Chilingaryan, A.1
Gevorgyan, N.2
-
20
-
-
2442687038
-
A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks
-
Dasika M.S., Gupta A., et al. A mixed integer linear programming (MILP) framework for inferring time delay in gene regulatory networks. Pacific Symposium in Biocomputing (2004) 474-485
-
(2004)
Pacific Symposium in Biocomputing
, pp. 474-485
-
-
Dasika, M.S.1
Gupta, A.2
-
21
-
-
4143134783
-
Finding predictive gene groups from microarray data
-
Dettling M., and Buhlmann P. Finding predictive gene groups from microarray data. Journal of Multivariate Analysis 90 1 (2004) 106-131
-
(2004)
Journal of Multivariate Analysis
, vol.90
, Issue.1
, pp. 106-131
-
-
Dettling, M.1
Buhlmann, P.2
-
22
-
-
0035076190
-
Small sample issues for microarray-based classification
-
Dougherty E.R. Small sample issues for microarray-based classification. Comparative and Functional Genomics 2 1 (2001) 28-34
-
(2001)
Comparative and Functional Genomics
, vol.2
, Issue.1
, pp. 28-34
-
-
Dougherty, E.R.1
-
23
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit S., Yang Y.H., et al. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12 1 (2002) 111-139
-
(2002)
Statistica Sinica
, vol.12
, Issue.1
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
-
25
-
-
0000764772
-
The use of multiple measurements in taxonomic problems
-
Fisher R.A. The use of multiple measurements in taxonomic problems. Annals of Eugenics 7 11 (1936) 179-188
-
(1936)
Annals of Eugenics
, vol.7
, Issue.11
, pp. 179-188
-
-
Fisher, R.A.1
-
27
-
-
25144487283
-
Research challenges, opportunities and synergism in systems engineering and computational biology
-
Floudas C.A. Research challenges, opportunities and synergism in systems engineering and computational biology. Aiche Journal 51 7 (2005) 1872-1884
-
(2005)
Aiche Journal
, vol.51
, Issue.7
, pp. 1872-1884
-
-
Floudas, C.A.1
-
28
-
-
3042626692
-
Overexpression of the NF2 gene inhibits schwannoma cell proliferation through promoting PDGFR degradation
-
Fraenzer J.T., Pan H., et al. Overexpression of the NF2 gene inhibits schwannoma cell proliferation through promoting PDGFR degradation. International Journal of Oncology 23 6 (2003) 1493-1500
-
(2003)
International Journal of Oncology
, vol.23
, Issue.6
, pp. 1493-1500
-
-
Fraenzer, J.T.1
Pan, H.2
-
29
-
-
84989432337
-
A linear programming approach to the discriminant problem
-
Freed N., and Glover F. A linear programming approach to the discriminant problem. Decision Sciences 12 (1981) 68-74
-
(1981)
Decision Sciences
, vol.12
, pp. 68-74
-
-
Freed, N.1
Glover, F.2
-
30
-
-
0019565499
-
Simple but powerful goal programming for the discriminant problem
-
Freed N., and Glover F. Simple but powerful goal programming for the discriminant problem. European Journal of Operational Research 7 (1981) 44-60
-
(1981)
European Journal of Operational Research
, vol.7
, pp. 44-60
-
-
Freed, N.1
Glover, F.2
-
31
-
-
84985774794
-
Evaluating alternative linear programming formulations for the discriminant problem
-
Freed N., and Glover F. Evaluating alternative linear programming formulations for the discriminant problem. Decision Sciences 17 (1986) 151-162
-
(1986)
Decision Sciences
, vol.17
, pp. 151-162
-
-
Freed, N.1
Glover, F.2
-
32
-
-
0022882706
-
General mathematical programming formulations for the statistical classification problem
-
Gehrlein W.V. General mathematical programming formulations for the statistical classification problem. Operations Research Letters 5 6 (1986) 299-304
-
(1986)
Operations Research Letters
, vol.5
, Issue.6
, pp. 299-304
-
-
Gehrlein, W.V.1
-
33
-
-
0016619730
-
Improved Linear integer Programming Formulations of Nonlinear Integer Problems
-
Glover F. Improved Linear integer Programming Formulations of Nonlinear Integer Problems. Management Science 22 4 (1975) 455-460
-
(1975)
Management Science
, vol.22
, Issue.4
, pp. 455-460
-
-
Glover, F.1
-
34
-
-
84985847276
-
Improved linear programming models for discrminant analysis
-
Glover F. Improved linear programming models for discrminant analysis. Decision Sciences 21 (1990) 771-785
-
(1990)
Decision Sciences
, vol.21
, pp. 771-785
-
-
Glover, F.1
-
35
-
-
84985822265
-
A new class of models for the discrminant problem
-
Glover F., Keene S., et al. A new class of models for the discrminant problem. Decision Sciences 19 (1988) 269-280
-
(1988)
Decision Sciences
, vol.19
, pp. 269-280
-
-
Glover, F.1
Keene, S.2
-
36
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub T.R., Slonim D.K., et al. Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286 5439 (1999) 531-537
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
-
37
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon I., Weston J., et al. Gene selection for cancer classification using support vector machines. Machine Learning 46 1-3 (2002) 389-422
-
(2002)
Machine Learning
, vol.46
, Issue.1-3
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
-
38
-
-
1242328740
-
Reconstruction of microbial transcriptional regulatory networks
-
Herrgard M.J., Covert M.W., et al. Reconstruction of microbial transcriptional regulatory networks. Current Opinion in Biotechnology 15 1 (2004) 70-77
-
(2004)
Current Opinion in Biotechnology
, vol.15
, Issue.1
, pp. 70-77
-
-
Herrgard, M.J.1
Covert, M.W.2
-
39
-
-
0036083445
-
A data complexity analysis of comparative advantages of decision forest constructirs
-
Ho T. A data complexity analysis of comparative advantages of decision forest constructirs. Pattern Analysis Applications 5 (2002) 102-112
-
(2002)
Pattern Analysis Applications
, vol.5
, pp. 102-112
-
-
Ho, T.1
-
41
-
-
26444603842
-
Altered expression of immune defense genes in pilocytic astrocytomas
-
Huang H., Hara A., et al. Altered expression of immune defense genes in pilocytic astrocytomas. Journal of Neuropathology and Experimental Neurology 64 10 (2005) 891-901
-
(2005)
Journal of Neuropathology and Experimental Neurology
, vol.64
, Issue.10
, pp. 891-901
-
-
Huang, H.1
Hara, A.2
-
43
-
-
0031078007
-
Feature selection: Evaluation, application, and small sample performance
-
Jain A., and Zongker D. Feature selection: Evaluation, application, and small sample performance. IEEE Transactions on Pattern Analysis and Machine Intelligence 19 2 (1997) 153-158
-
(1997)
IEEE Transactions on Pattern Analysis and Machine Intelligence
, vol.19
, Issue.2
, pp. 153-158
-
-
Jain, A.1
Zongker, D.2
-
44
-
-
0036739031
-
Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes
-
Jegga A.G., Sherwood S.P., et al. Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes. Genome Research 12 9 (2002) 1408-1417
-
(2002)
Genome Research
, vol.12
, Issue.9
, pp. 1408-1417
-
-
Jegga, A.G.1
Sherwood, S.P.2
-
45
-
-
0036299061
-
A revolutionary landscape: The restructuring of biology and its convergence with medicine
-
Kafatos F.C. A revolutionary landscape: The restructuring of biology and its convergence with medicine. Journal of Molecular Biology 319 4 (2002) 861-867
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.4
, pp. 861-867
-
-
Kafatos, F.C.1
-
46
-
-
0345743695
-
Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis
-
Kao K.C., Yang Y.L., et al. Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis. Proceedings of the National Academy of Sciences of the United States of America 101 2 (2004) 641-646
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.2
, pp. 641-646
-
-
Kao, K.C.1
Yang, Y.L.2
-
47
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J., Wei J.S., et al. Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Natural Medicine 7 6 (2001) 673-679
-
(2001)
Natural Medicine
, vol.7
, Issue.6
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
-
48
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nature Reviews Genetics 5 11 (2004) 826-837
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.11
, pp. 826-837
-
-
Kitano, H.1
-
49
-
-
0031381525
-
Wrappers for feature subset selection
-
Kohavi R., and John G.H. Wrappers for feature subset selection. Artificial Intelligence 97 1-2 (1997) 273-324
-
(1997)
Artificial Intelligence
, vol.97
, Issue.1-2
, pp. 273-324
-
-
Kohavi, R.1
John, G.H.2
-
50
-
-
0038711281
-
Profiling of dynamic changes in hypermetabolic livers
-
Lee K., Berthiaume F., et al. Profiling of dynamic changes in hypermetabolic livers. Biotechnology and Bioengineering 83 4 (2003) 400-415
-
(2003)
Biotechnology and Bioengineering
, vol.83
, Issue.4
, pp. 400-415
-
-
Lee, K.1
Berthiaume, F.2
-
51
-
-
0037666114
-
Hepatobiliary excretion of tributylmethylamonium in rats with lipopolysaccharide-induced acute inflammation
-
Lee I.K., Lee Y.M., et al. Hepatobiliary excretion of tributylmethylamonium in rats with lipopolysaccharide-induced acute inflammation. Archives of Pharmacal Research 25 6 (2002) 969-972
-
(2002)
Archives of Pharmacal Research
, vol.25
, Issue.6
, pp. 969-972
-
-
Lee, I.K.1
Lee, Y.M.2
-
52
-
-
0036791604
-
Caveolin-1 mutations (P132L and null) and the pathogenesis of breast cancer: Caveolin-1 (P132L) behaves in a dominant-negative manner and caveolin-1(-/-) null mice show mammary epithelial cell hyperplasia
-
Lee H., Park D.S., et al. Caveolin-1 mutations (P132L and null) and the pathogenesis of breast cancer: Caveolin-1 (P132L) behaves in a dominant-negative manner and caveolin-1(-/-) null mice show mammary epithelial cell hyperplasia. American Journal of Pathology 161 4 (2002) 1357-1369
-
(2002)
American Journal of Pathology
, vol.161
, Issue.4
, pp. 1357-1369
-
-
Lee, H.1
Park, D.S.2
-
54
-
-
0036166753
-
Linear modes of gene expression determined by independent component analysis
-
Liebermeister W. Linear modes of gene expression determined by independent component analysis. Bioinformatics 18 1 (2002) 51-60
-
(2002)
Bioinformatics
, vol.18
, Issue.1
, pp. 51-60
-
-
Liebermeister, W.1
-
55
-
-
7644224224
-
AF1q, a differentially expressed gene during neuronal differentiation, transforms HEK cells into neuron-like cells
-
Lin H.J., Shaffer K.M., et al. AF1q, a differentially expressed gene during neuronal differentiation, transforms HEK cells into neuron-like cells. Brain Research. Molecular Brain Research 131 1-2 (2004) 126-130
-
(2004)
Brain Research. Molecular Brain Research
, vol.131
, Issue.1-2
, pp. 126-130
-
-
Lin, H.J.1
Shaffer, K.M.2
-
56
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz R.J., Fodor S.P., et al. High density synthetic oligonucleotide arrays. Nature Genetics 21 Suppl. 1 (1999) 20-24
-
(1999)
Nature Genetics
, vol.21
, Issue.SUPPL. 1
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
-
58
-
-
19944434141
-
Genetic and epigenetic alteration of the NF2 gene in sporadic meningiomas
-
Lomas J., Bello M.J., et al. Genetic and epigenetic alteration of the NF2 gene in sporadic meningiomas. Genes Chromosomes Cancer 42 3 (2005) 314-319
-
(2005)
Genes Chromosomes Cancer
, vol.42
, Issue.3
, pp. 314-319
-
-
Lomas, J.1
Bello, M.J.2
-
59
-
-
0035874995
-
Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling
-
Luo J., Duggan D.J., et al. Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling. Cancer Research 61 12 (2001) 4683-4688
-
(2001)
Cancer Research
, vol.61
, Issue.12
, pp. 4683-4688
-
-
Luo, J.1
Duggan, D.J.2
-
60
-
-
0000963583
-
Linear and nonlinear separation of patterns by linear programming
-
Mangasarian O.L. Linear and nonlinear separation of patterns by linear programming. Operations Research 13 (1965) 444-452
-
(1965)
Operations Research
, vol.13
, pp. 444-452
-
-
Mangasarian, O.L.1
-
62
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
Matys V., Fricke E., et al. TRANSFAC: Transcriptional regulation, from patterns to profiles. Nucleic Acids Research 31 1 (2003) 374-378
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
-
63
-
-
20144385916
-
Transcriptional regulation of NF-E2 p45-related factor (NRF2) expression by the aryl hydrocarbon receptor-xenobiotic response element signaling pathway: Direct cross-talk between phase I and II drug-metabolizing enzymes
-
Miao W., Hu L., et al. Transcriptional regulation of NF-E2 p45-related factor (NRF2) expression by the aryl hydrocarbon receptor-xenobiotic response element signaling pathway: Direct cross-talk between phase I and II drug-metabolizing enzymes. Journal of Biological Chemistry 280 21 (2005) 20340-20348
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.21
, pp. 20340-20348
-
-
Miao, W.1
Hu, L.2
-
64
-
-
0017535866
-
A branch and bound algorithm for feature subset selection
-
Narendra P., and Fukunaga K. A branch and bound algorithm for feature subset selection. IEEE Transactions of Computers C-26 9 (1977) 917-926
-
(1977)
IEEE Transactions of Computers
, vol.C-26
, Issue.9
, pp. 917-926
-
-
Narendra, P.1
Fukunaga, K.2
-
66
-
-
0031225483
-
IL-6 triggers cell growth via the Ras-dependent mitogen-activated protein kinase cascade
-
Ogata A., Chauhan D., et al. IL-6 triggers cell growth via the Ras-dependent mitogen-activated protein kinase cascade. Journal of Immunology 159 5 (1997) 2212-2221
-
(1997)
Journal of Immunology
, vol.159
, Issue.5
, pp. 2212-2221
-
-
Ogata, A.1
Chauhan, D.2
-
68
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack J.R., Perou C.M., et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nature Genetics 23 1 (1999) 41-46
-
(1999)
Nature Genetics
, vol.23
, Issue.1
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
-
69
-
-
0142179209
-
Prediction of regulatory networks: Genome-wide identification of transcription factor targets from gene expression data
-
Qian J., Lin J., et al. Prediction of regulatory networks: Genome-wide identification of transcription factor targets from gene expression data. Bioinformatics 19 15 (2003) 1917-1926
-
(2003)
Bioinformatics
, vol.19
, Issue.15
, pp. 1917-1926
-
-
Qian, J.1
Lin, J.2
-
70
-
-
0028971143
-
MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
Quandt K., Frech K., et al. MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Research 23 23 (1995) 4878-4884
-
(1995)
Nucleic Acids Research
, vol.23
, Issue.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
-
71
-
-
0035515318
-
Caveolin-1 expression is associated with high-grade bladder cancer
-
Rajjayabun P.H., Garg S., et al. Caveolin-1 expression is associated with high-grade bladder cancer. Urology 58 5 (2001) 811-814
-
(2001)
Urology
, vol.58
, Issue.5
, pp. 811-814
-
-
Rajjayabun, P.H.1
Garg, S.2
-
72
-
-
0033657261
-
Principal components analysis to summarize microarray experiments: Application to sporulation time series
-
Raychaudhuri S., Stuart J.M., et al. Principal components analysis to summarize microarray experiments: Application to sporulation time series. Pacific Symposium on Biocomputing (2000) 455-466
-
(2000)
Pacific Symposium on Biocomputing
, pp. 455-466
-
-
Raychaudhuri, S.1
Stuart, J.M.2
-
73
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross D.T., Scherf U., et al. Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics 24 3 (2000) 227-235
-
(2000)
Nature Genetics
, vol.24
, Issue.3
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
-
74
-
-
24044521938
-
The merlin tumor suppressor interacts with Ral guanine nucleotide dissociation stimulator and inhibits its activity
-
Ryu C.H., Kim S.W., et al. The merlin tumor suppressor interacts with Ral guanine nucleotide dissociation stimulator and inhibits its activity. Oncogene 24 34 (2005) 5355-5364
-
(2005)
Oncogene
, vol.24
, Issue.34
, pp. 5355-5364
-
-
Ryu, C.H.1
Kim, S.W.2
-
75
-
-
0000318768
-
BARON: A general purpose global optimization software package
-
Sahinidis N.V. BARON: A general purpose global optimization software package. Journal of Global Optimization 8 2 (1996) 201-205
-
(1996)
Journal of Global Optimization
, vol.8
, Issue.2
, pp. 201-205
-
-
Sahinidis, N.V.1
-
76
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M., Shalon D., et al. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 5235 (1995) 467-470
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
-
77
-
-
4444352289
-
Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data
-
Schmitt Jr. W.A., Raab R.M., et al. Elucidation of gene interaction networks through time-lagged correlation analysis of transcriptional data. Genome Research 14 8 (2004) 1654-1663
-
(2004)
Genome Research
, vol.14
, Issue.8
, pp. 1654-1663
-
-
Schmitt Jr., W.A.1
Raab, R.M.2
-
78
-
-
0037062684
-
Obligatory role of cyclic adenosine monophosphate response element in cyclooxygenase-2 promoter induction and feedback regulation by inflammatory mediators
-
Schroer K., Zhu Y., et al. Obligatory role of cyclic adenosine monophosphate response element in cyclooxygenase-2 promoter induction and feedback regulation by inflammatory mediators. Circulation 105 23 (2002) 2760-2765
-
(2002)
Circulation
, vol.105
, Issue.23
, pp. 2760-2765
-
-
Schroer, K.1
Zhu, Y.2
-
79
-
-
0036843575
-
Jaks, STATs, Cytokines, and Sepsis
-
Scott M.J., Godshall C.J., et al. Jaks, STATs, Cytokines, and Sepsis. Clinical and Diagnostic Laboratory Immunology 9 6 (2002) 1153-1159
-
(2002)
Clinical and Diagnostic Laboratory Immunology
, vol.9
, Issue.6
, pp. 1153-1159
-
-
Scott, M.J.1
Godshall, C.J.2
-
81
-
-
0037108907
-
A novel transgenic line of mice exhibiting autosomal recessive male-specific lethality and non-alcoholic fatty liver disease
-
Sollars V.E., McEntee B.J., et al. A novel transgenic line of mice exhibiting autosomal recessive male-specific lethality and non-alcoholic fatty liver disease. Human Molecular Genetics 11 22 (2002) 2777-2786
-
(2002)
Human Molecular Genetics
, vol.11
, Issue.22
, pp. 2777-2786
-
-
Sollars, V.E.1
McEntee, B.J.2
-
82
-
-
3343020739
-
Caveolin-1 expression is critical for vascular endothelial growth factor-induced ischemic hindlimb collateralization and nitric oxide-mediated angiogenesis
-
Sonveaux P., Martinive P., et al. Caveolin-1 expression is critical for vascular endothelial growth factor-induced ischemic hindlimb collateralization and nitric oxide-mediated angiogenesis. Circulation Research 95 2 (2004) 154-161
-
(2004)
Circulation Research
, vol.95
, Issue.2
, pp. 154-161
-
-
Sonveaux, P.1
Martinive, P.2
-
83
-
-
0031522092
-
Nontraditional approaches to statistical classification: Some perspectives on L_p-norm methods
-
Stam A. Nontraditional approaches to statistical classification: Some perspectives on L_p-norm methods. Annals of Operations Research 74 (1997) 1-36
-
(1997)
Annals of Operations Research
, vol.74
, pp. 1-36
-
-
Stam, A.1
-
84
-
-
14644390203
-
Oblique multicategory decision trees using nonlinear programming
-
Street W.N. Oblique multicategory decision trees using nonlinear programming. Informs Journal on Computing 17 1 (2005) 25-31
-
(2005)
Informs Journal on Computing
, vol.17
, Issue.1
, pp. 25-31
-
-
Street, W.N.1
-
85
-
-
38849146180
-
A mathematical programming approach for gene selection and tumor classification
-
Sun M., and Xiong M. A mathematical programming approach for gene selection and tumor classification. American Journal of Human Genetics 71 4 (2002) 229-1229
-
(2002)
American Journal of Human Genetics
, vol.71
, Issue.4
, pp. 229-1229
-
-
Sun, M.1
Xiong, M.2
-
86
-
-
0036130619
-
Variable selection and pattern recognition with gene expression data generated by the microarray technology
-
Szabo A., Boucher K., et al. Variable selection and pattern recognition with gene expression data generated by the microarray technology. Mathematical Biosciences 176 1 (2002) 71-98
-
(2002)
Mathematical Biosciences
, vol.176
, Issue.1
, pp. 71-98
-
-
Szabo, A.1
Boucher, K.2
-
87
-
-
33646489947
-
Heterotachy in mammalian promoter evolution
-
Taylor M.S., Kai C., et al. Heterotachy in mammalian promoter evolution. PLoS Genet 2 4 (2006) e30
-
(2006)
PLoS Genet
, vol.2
, Issue.4
-
-
Taylor, M.S.1
Kai, C.2
-
88
-
-
33644873683
-
The YEASTRACT database: A tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae
-
Teixeira M.C., Monteiro P., et al. The YEASTRACT database: A tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. Nucleic Acids Research 34 Database issue (2006) D446-D451
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.Database issue
-
-
Teixeira, M.C.1
Monteiro, P.2
-
89
-
-
21144439147
-
Assessing computational tools for the discovery of transcription factor binding sites
-
Tompa M., Li N., et al. Assessing computational tools for the discovery of transcription factor binding sites. Nature Biotechnology 23 1 (2005) 137-144
-
(2005)
Nature Biotechnology
, vol.23
, Issue.1
, pp. 137-144
-
-
Tompa, M.1
Li, N.2
-
90
-
-
15244338624
-
gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation
-
Tran L.M., Brynildsen M.P., et al. gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation. Metabolic Engineering 7 2 (2005) 128-141
-
(2005)
Metabolic Engineering
, vol.7
, Issue.2
, pp. 128-141
-
-
Tran, L.M.1
Brynildsen, M.P.2
-
91
-
-
38849196035
-
-
Uney, F., Turkay, M. (in press). A mixed-integer programming approach to multi-class data classification problem. European Journal of Operations Research.
-
Uney, F., Turkay, M. (in press). A mixed-integer programming approach to multi-class data classification problem. European Journal of Operations Research.
-
-
-
-
92
-
-
4844229870
-
Expression profiling analysis of the metabolic and inflammatory changes following burn injury in rats
-
Vemula M., Berthiaume F., et al. Expression profiling analysis of the metabolic and inflammatory changes following burn injury in rats. Physiology Genomics 18 1 (2004) 87-98
-
(2004)
Physiology Genomics
, vol.18
, Issue.1
, pp. 87-98
-
-
Vemula, M.1
Berthiaume, F.2
-
94
-
-
1842640322
-
Role of mediator in transcriptional activation by the aryl hydrocarbon receptor
-
Wang S., Ge K., et al. Role of mediator in transcriptional activation by the aryl hydrocarbon receptor. Journal of Biological Chemistry 279 14 (2004) 13593-13600
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.14
, pp. 13593-13600
-
-
Wang, S.1
Ge, K.2
-
95
-
-
1842584947
-
Applied bioinformatics for the identification of regulatory elements
-
Wasserman W.W., and Sandelin A. Applied bioinformatics for the identification of regulatory elements. Nature Reviews Genetics 5 4 (2004) 276-287
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.4
, pp. 276-287
-
-
Wasserman, W.W.1
Sandelin, A.2
-
96
-
-
3142755492
-
Charting gene regulatory networks: Strategies, challenges and perspectives
-
Wei G.H., Liu D.P., et al. Charting gene regulatory networks: Strategies, challenges and perspectives. Biochemistry Journal 381 Pt 1 (2004) 1-12
-
(2004)
Biochemistry Journal
, vol.381
, Issue.PART 1
, pp. 1-12
-
-
Wei, G.H.1
Liu, D.P.2
-
98
-
-
0037342807
-
Loss of caveolin-1 gene expression accelerates the development of dysplastic mammary lesions in tumor-prone transgenic mice
-
Williams T.M., Cheung M.W., et al. Loss of caveolin-1 gene expression accelerates the development of dysplastic mammary lesions in tumor-prone transgenic mice. Molecular Biology of Cell 14 3 (2003) 1027-1042
-
(2003)
Molecular Biology of Cell
, vol.14
, Issue.3
, pp. 1027-1042
-
-
Williams, T.M.1
Cheung, M.W.2
-
99
-
-
21644452110
-
Caveolin-1 promotes tumor progression in an autochthonous mouse model of prostate cancer: Genetic ablation of Cav-1 delays advanced prostate tumor development in tramp mice
-
Williams T.M., Hassan G.S., et al. Caveolin-1 promotes tumor progression in an autochthonous mouse model of prostate cancer: Genetic ablation of Cav-1 delays advanced prostate tumor development in tramp mice. Journal of Biological Chemistry 280 26 (2005) 25134-25145
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.26
, pp. 25134-25145
-
-
Williams, T.M.1
Hassan, G.S.2
-
100
-
-
19944366937
-
Caveolin-1 gene disruption promotes mammary tumorigenesis and dramatically enhances lung metastasis in vivo. Role of Cav-1 in cell invasiveness and matrix metalloproteinase (MMP-2/9) secretion
-
Williams T.M., Medina F., et al. Caveolin-1 gene disruption promotes mammary tumorigenesis and dramatically enhances lung metastasis in vivo. Role of Cav-1 in cell invasiveness and matrix metalloproteinase (MMP-2/9) secretion. Journal of Biological Chemistry 279 49 (2004) 51630-51646
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.49
, pp. 51630-51646
-
-
Williams, T.M.1
Medina, F.2
-
103
-
-
33645650763
-
New approaches for enabling temporal expression profiling analysis
-
Cincinnati
-
Yang E., Roth C.M., et al. New approaches for enabling temporal expression profiling analysis. AIChE Annual Meeting. Cincinnati (2005)
-
(2005)
AIChE Annual Meeting
-
-
Yang, E.1
Roth, C.M.2
-
104
-
-
23744502897
-
Inferring yeast cell cycle regulators and interactions using transcription factor activities
-
Yang Y.L., Suen J., et al. Inferring yeast cell cycle regulators and interactions using transcription factor activities. BMC Genomics 6 1 (2005) 90
-
(2005)
BMC Genomics
, vol.6
, Issue.1
, pp. 90
-
-
Yang, Y.L.1
Suen, J.2
-
105
-
-
0035284906
-
MHC class I-related neonatal Fc receptor for IgG is functionally expressed in monocytes, intestinal macrophages, and dendritic cells
-
Zhu X., Meng G., et al. MHC class I-related neonatal Fc receptor for IgG is functionally expressed in monocytes, intestinal macrophages, and dendritic cells. Journal of Immunology 166 5 (2001) 3266-3276
-
(2001)
Journal of Immunology
, vol.166
, Issue.5
, pp. 3266-3276
-
-
Zhu, X.1
Meng, G.2
|