Progress in predicting inter-residue contacts of proteins with neural networks and correlated mutations

Proteins: Structure, Function and Genetics

Volumn 45, Issue SUPPL. 5, 2001, Pages 157-162

  Fariselli, Piero ^a   Olmea, Osvaldo ^b   Valencia, Alfonso ^b   Casadio, Rita ^a,c  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

^c Department of Biology ^*  (Italy)

Author keywords

Contact maps; Correlated mutations; Neural networks; Protein structure predictions; Residue contacts

Indexed keywords

ACCURACY; ALPHA CHAIN; ARTICLE; ARTIFICIAL NEURAL NETWORK; BETA SHEET; EVOLUTION; MUTATION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; COMPUTER PROGRAM; EVALUATION; PROTEIN CONFORMATION; PROTEIN TERTIARY STRUCTURE;

MUTATION; NEURAL NETWORKS (COMPUTER); PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE;

EID: 0035700864     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.1173     Document Type: Article

References (14)

1. The prediction of protein contacts from multiple sequence alignments
2. Recovery of protein structure from contact maps
3. Neural network based predictor of residue contacts in proteins
4. Improving contact predictions by the combination of correlated mutations and other sources of sequence information
5. Protein distance constraints predicted by neural networks and probability density functions
6. Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction
7. The HSSP database of protein structure-sequence alignments and family profiles
8. Correlated mutations and residue contacts in proteins
9. Test for comparing related aminoacid sequences
10. Predicting secondary structures of membrane proteins with neural networks
11. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
12. Predictions of protein segments with the same amino acid sequence and different secondary structure: A benchmark for predictive methods
13. Correlated mutations contain information about protein-protein interaction