메뉴 건너뛰기




Volumn 131, Issue 2, 2008, Pages 271-278

Evolutionary analyses of European H1N2 swine influenza A virus by placing timestamps on the multiple reassortment events

Author keywords

H1N2 influenza; Local clock; Molecular clock; Molecular dating; Multiple reassortments; Synonymous substitution

Indexed keywords

ARTICLE; EUROPE; GENETIC LINKAGE; GENETIC REASSORTMENT; INFLUENZA VIRUS A H1N2; MOLECULAR CLOCK; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SWINE INFLUENZA VIRUS; UNITED KINGDOM; VIRUS GENE; VIRUS GENOME;

EID: 38649137252     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2007.08.012     Document Type: Article
Times cited : (22)

References (43)
  • 1
    • 0029282103 scopus 로고
    • Disease outbreaks in pigs in Great Britain due to an influenza A virus of H1N2 subtype
    • Brown I.H., Chakraverty P., Harris P.A., and Alexander D.J. Disease outbreaks in pigs in Great Britain due to an influenza A virus of H1N2 subtype. Vet. Rec. 136 13 (1995) 328-329
    • (1995) Vet. Rec. , vol.136 , Issue.13 , pp. 328-329
    • Brown, I.H.1    Chakraverty, P.2    Harris, P.A.3    Alexander, D.J.4
  • 2
    • 0032427877 scopus 로고    scopus 로고
    • Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype
    • Brown I.H., Harris P.A., McCauley J.W., and Alexander D.J. Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype. J. Gen. Virol. 79 Pt 12 (1998) 2947-2955
    • (1998) J. Gen. Virol. , vol.79 , Issue.PART 12 , pp. 2947-2955
    • Brown, I.H.1    Harris, P.A.2    McCauley, J.W.3    Alexander, D.J.4
  • 4
    • 0027319691 scopus 로고
    • Genetic reassortment between avian and human influenza A viruses in Italian pigs
    • Castrucci M.R., Donatelli I., Sidoli L., Barigazzi G., Kawaoka Y., and Webster R.G. Genetic reassortment between avian and human influenza A viruses in Italian pigs. Virology 193 1 (1993) 503-506
    • (1993) Virology , vol.193 , Issue.1 , pp. 503-506
    • Castrucci, M.R.1    Donatelli, I.2    Sidoli, L.3    Barigazzi, G.4    Kawaoka, Y.5    Webster, R.G.6
  • 5
    • 0036674782 scopus 로고    scopus 로고
    • Phylogenetic analysis of H1N2 isolates of influenza A virus from pigs in the United States
    • Choi Y.K., Goyal S.M., Farnham M.W., and Joo H.S. Phylogenetic analysis of H1N2 isolates of influenza A virus from pigs in the United States. Virus Res. 87 2 (2002) 173-179
    • (2002) Virus Res. , vol.87 , Issue.2 , pp. 173-179
    • Choi, Y.K.1    Goyal, S.M.2    Farnham, M.W.3    Joo, H.S.4
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 6 (1981) 368-376
    • (1981) J. Mol. Evol. , vol.17 , Issue.6 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0036094818 scopus 로고    scopus 로고
    • An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
    • Gaunt M.W., and Miles M.A. An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol. Biol. Evol. 19 5 (2002) 748-761
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.5 , pp. 748-761
    • Gaunt, M.W.1    Miles, M.A.2
  • 10
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 5 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 11
    • 0035942198 scopus 로고    scopus 로고
    • Estimating risks in declining populations with poor data
    • Holmes E.E. Estimating risks in declining populations with poor data. Proc. Natl. Acad. Sci. U.S.A. 98 9 (2001) 5072-5077
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , Issue.9 , pp. 5072-5077
    • Holmes, E.E.1
  • 12
    • 33748672063 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B
    • Hon C.C., Lam T.Y., Drummond A., Rambaut A., Lee Y.F., Yip C.W., Zeng F., Lam P.Y., Ng P.T., and Leung F.C. Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B. J. Virol. 80 17 (2006) 8503-8509
    • (2006) J. Virol. , vol.80 , Issue.17 , pp. 8503-8509
    • Hon, C.C.1    Lam, T.Y.2    Drummond, A.3    Rambaut, A.4    Lee, Y.F.5    Yip, C.W.6    Zeng, F.7    Lam, P.Y.8    Ng, P.T.9    Leung, F.C.10
  • 13
    • 0030902563 scopus 로고    scopus 로고
    • Phylogenetic methods come of age: testing hypotheses in an evolutionary context
    • Huelsenbeck J.P., and Rannala B. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276 5310 (1997) 227-232
    • (1997) Science , vol.276 , Issue.5310 , pp. 227-232
    • Huelsenbeck, J.P.1    Rannala, B.2
  • 15
    • 0031668553 scopus 로고    scopus 로고
    • Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan
    • Ito T., Kawaoka Y., Vines A., Ishikawa H., Asai T., and Kida H. Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan. Arch. Virol. 143 9 (1998) 1773-1782
    • (1998) Arch. Virol. , vol.143 , Issue.9 , pp. 1773-1782
    • Ito, T.1    Kawaoka, Y.2    Vines, A.3    Ishikawa, H.4    Asai, T.5    Kida, H.6
  • 16
    • 0000667845 scopus 로고    scopus 로고
    • Receptors of influenza A viruses. Implications for the role of pigs in the generation of pandemic human influenza viruses
    • Brown L.E., Hampson A.W., and Webster R.G. (Eds), Elsevier Science, Amsterdam
    • Ito T., Kida H., and Kawaoka Y. Receptors of influenza A viruses. Implications for the role of pigs in the generation of pandemic human influenza viruses. In: Brown L.E., Hampson A.W., and Webster R.G. (Eds). In Options for the Control of Influenza III (1996), Elsevier Science, Amsterdam 516-519
    • (1996) In Options for the Control of Influenza III , pp. 516-519
    • Ito, T.1    Kida, H.2    Kawaoka, Y.3
  • 17
    • 0036147047 scopus 로고    scopus 로고
    • Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis
    • Jenkins G.M., Rambaut A., Pybus O.G., and Holmes E.C. Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J. Mol. Evol. 54 2 (2002) 156-165
    • (2002) J. Mol. Evol. , vol.54 , Issue.2 , pp. 156-165
    • Jenkins, G.M.1    Rambaut, A.2    Pybus, O.G.3    Holmes, E.C.4
  • 22
    • 0242475196 scopus 로고    scopus 로고
    • Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions
    • Lemey P., Salemi M., Wang B., Duffy M., Hall W.H., Saksena N.K., and Vandamme A.M. Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions. FEMS Immunol. Med. Microbiol. 39 2 (2003) 125-132
    • (2003) FEMS Immunol. Med. Microbiol. , vol.39 , Issue.2 , pp. 125-132
    • Lemey, P.1    Salemi, M.2    Wang, B.3    Duffy, M.4    Hall, W.H.5    Saksena, N.K.6    Vandamme, A.M.7
  • 24
    • 38649087722 scopus 로고    scopus 로고
    • NCBI, National Center for Biotechnology Information. Influenza Virus Resource, 2004 Nov 17. Available from http://www.ncbi.nlm.nih.gov/genomes/FLU/.
    • NCBI, National Center for Biotechnology Information. Influenza Virus Resource, 2004 Nov 17. Available from http://www.ncbi.nlm.nih.gov/genomes/FLU/.
  • 25
    • 0037053093 scopus 로고    scopus 로고
    • The emergence of novel swine influenza viruses in North America
    • Olsen C.W. The emergence of novel swine influenza viruses in North America. Virus Res. 85 2 (2002) 199-210
    • (2002) Virus Res. , vol.85 , Issue.2 , pp. 199-210
    • Olsen, C.W.1
  • 26
    • 0020457664 scopus 로고
    • Human influenza A viruses in pigs: isolation of a H3N2 strain antigenically related to A/England/42/72 and evidence for continuous circulation of human viruses in the pig population
    • Ottis K., Sidoli L., Bachmann P.A., Webster R.G., and Kaplan M.M. Human influenza A viruses in pigs: isolation of a H3N2 strain antigenically related to A/England/42/72 and evidence for continuous circulation of human viruses in the pig population. Arch. Virol. 73 2 (1982) 103-108
    • (1982) Arch. Virol. , vol.73 , Issue.2 , pp. 103-108
    • Ottis, K.1    Sidoli, L.2    Bachmann, P.A.3    Webster, R.G.4    Kaplan, M.M.5
  • 27
    • 9444272187 scopus 로고    scopus 로고
    • Large outbreak of swine influenza in southern Japan caused by reassortant (H1N2) influenza viruses: its epizootic background and characterization of the causative viruses
    • Ouchi A., Nerome K., Kanegae Y., Ishida M., Nerome R., Hayashi K., Hashimoto T., Kaji M., Kaji Y., and Inaba Y. Large outbreak of swine influenza in southern Japan caused by reassortant (H1N2) influenza viruses: its epizootic background and characterization of the causative viruses. J. Gen. Virol. 77 Pt 8 (1996) 1751-1759
    • (1996) J. Gen. Virol. , vol.77 , Issue.PART 8 , pp. 1751-1759
    • Ouchi, A.1    Nerome, K.2    Kanegae, Y.3    Ishida, M.4    Nerome, R.5    Hayashi, K.6    Hashimoto, T.7    Kaji, M.8    Kaji, Y.9    Inaba, Y.10
  • 28
    • 0033613376 scopus 로고    scopus 로고
    • Inferring the historical patterns of biological evolution
    • Pagel M. Inferring the historical patterns of biological evolution. Nature 401 6756 (1999) 877-884
    • (1999) Nature , vol.401 , Issue.6756 , pp. 877-884
    • Pagel, M.1
  • 29
    • 27144453692 scopus 로고    scopus 로고
    • The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses
    • Parrish C.R., and Kawaoka Y. The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu. Rev. Microbiol. 59 (2005) 553-586
    • (2005) Annu. Rev. Microbiol. , vol.59 , pp. 553-586
    • Parrish, C.R.1    Kawaoka, Y.2
  • 30
    • 0034044313 scopus 로고    scopus 로고
    • Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
    • Rambaut A. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16 4 (2000) 395-399
    • (2000) Bioinformatics , vol.16 , Issue.4 , pp. 395-399
    • Rambaut, A.1
  • 31
    • 0031966291 scopus 로고    scopus 로고
    • Estimating divergence dates from molecular sequences
    • Rambaut A., and Bromham L. Estimating divergence dates from molecular sequences. Mol. Biol. Evol. 15 4 (1998) 442-448
    • (1998) Mol. Biol. Evol. , vol.15 , Issue.4 , pp. 442-448
    • Rambaut, A.1    Bromham, L.2
  • 32
    • 23844484143 scopus 로고    scopus 로고
    • Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS
    • Salemi M., Lamers S.L., Yu S., de Oliveira T., Fitch W.M., and McGrath M.S. Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS. J. Virol. 79 17 (2005) 11343-11352
    • (2005) J. Virol. , vol.79 , Issue.17 , pp. 11343-11352
    • Salemi, M.1    Lamers, S.L.2    Yu, S.3    de Oliveira, T.4    Fitch, W.M.5    McGrath, M.S.6
  • 33
    • 3042643030 scopus 로고    scopus 로고
    • Molecular epidemiology of porcine H3N2 influenza A viruses isolated in Germany between 1982 and 2001
    • Schrader C., and Suss J. Molecular epidemiology of porcine H3N2 influenza A viruses isolated in Germany between 1982 and 2001. Intervirology 47 2 (2004) 72-77
    • (2004) Intervirology , vol.47 , Issue.2 , pp. 72-77
    • Schrader, C.1    Suss, J.2
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0019271568 scopus 로고
    • Surveillance of influenza in pig herds in Czechoslovakia in 1974-1979. 1. Introduction of influenza epidemic A (H3N2) viruses into pig herds
    • Tumova B., Veznikova D., Mensik J., and Stumpa A. Surveillance of influenza in pig herds in Czechoslovakia in 1974-1979. 1. Introduction of influenza epidemic A (H3N2) viruses into pig herds. Zentralbl. Veterinarmed. B 27 7 (1980) 517-523
    • (1980) Zentralbl. Veterinarmed. B , vol.27 , Issue.7 , pp. 517-523
    • Tumova, B.1    Veznikova, D.2    Mensik, J.3    Stumpa, A.4
  • 36
    • 2442587211 scopus 로고    scopus 로고
    • Genetic relationships, serological cross-reaction and cross-protection between H1N2 and other influenza A virus subtypes endemic in European pigs
    • van Reeth K.V., Brown I., Essen S., and Pensaert M. Genetic relationships, serological cross-reaction and cross-protection between H1N2 and other influenza A virus subtypes endemic in European pigs. Virus Res. 103 1/2 (2004) 115-124
    • (2004) Virus Res. , vol.103 , Issue.1-2 , pp. 115-124
    • van Reeth, K.V.1    Brown, I.2    Essen, S.3    Pensaert, M.4
  • 37
    • 33745802348 scopus 로고    scopus 로고
    • Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43
    • Vijgen L., Keyaerts E., Lemey P., Maes P., Van Reeth K., Nauwynck H., Pensaert M., and Van Ranst M. Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43. J. Virol. 80 14 (2006) 7270-7274
    • (2006) J. Virol. , vol.80 , Issue.14 , pp. 7270-7274
    • Vijgen, L.1    Keyaerts, E.2    Lemey, P.3    Maes, P.4    Van Reeth, K.5    Nauwynck, H.6    Pensaert, M.7    Van Ranst, M.8
  • 40
    • 20144362109 scopus 로고    scopus 로고
    • Molecular dating when rates vary
    • Welch J.J., and Bromham L. Molecular dating when rates vary. Trends Ecol. Evol. 20 6 (2005) 320-327
    • (2005) Trends Ecol. Evol. , vol.20 , Issue.6 , pp. 320-327
    • Welch, J.J.1    Bromham, L.2
  • 41
    • 0030683599 scopus 로고    scopus 로고
    • PAML: a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 5 (1997) 555-556
    • (1997) Comput. Appl. Biosci. , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1
  • 42
    • 0033933640 scopus 로고    scopus 로고
    • Estimation of primate speciation dates using local molecular clocks
    • Yoder A.D., and Yang Z. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17 7 (2000) 1081-1090
    • (2000) Mol. Biol. Evol. , vol.17 , Issue.7 , pp. 1081-1090
    • Yoder, A.D.1    Yang, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.