-
1
-
-
0029282103
-
Disease outbreaks in pigs in Great Britain due to an influenza A virus of H1N2 subtype
-
Brown I.H., Chakraverty P., Harris P.A., and Alexander D.J. Disease outbreaks in pigs in Great Britain due to an influenza A virus of H1N2 subtype. Vet. Rec. 136 13 (1995) 328-329
-
(1995)
Vet. Rec.
, vol.136
, Issue.13
, pp. 328-329
-
-
Brown, I.H.1
Chakraverty, P.2
Harris, P.A.3
Alexander, D.J.4
-
2
-
-
0032427877
-
Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype
-
Brown I.H., Harris P.A., McCauley J.W., and Alexander D.J. Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype. J. Gen. Virol. 79 Pt 12 (1998) 2947-2955
-
(1998)
J. Gen. Virol.
, vol.79
, Issue.PART 12
, pp. 2947-2955
-
-
Brown, I.H.1
Harris, P.A.2
McCauley, J.W.3
Alexander, D.J.4
-
3
-
-
0030788982
-
Continued evolution of H1N1 and H3N2 influenza viruses in pigs in Italy
-
Campitelli L., Donatelli I., Foni E., Castrucci M.R., Fabiani C., Kawaoka Y., Krauss S., and Webster R.G. Continued evolution of H1N1 and H3N2 influenza viruses in pigs in Italy. Virology 232 2 (1997) 310-318
-
(1997)
Virology
, vol.232
, Issue.2
, pp. 310-318
-
-
Campitelli, L.1
Donatelli, I.2
Foni, E.3
Castrucci, M.R.4
Fabiani, C.5
Kawaoka, Y.6
Krauss, S.7
Webster, R.G.8
-
4
-
-
0027319691
-
Genetic reassortment between avian and human influenza A viruses in Italian pigs
-
Castrucci M.R., Donatelli I., Sidoli L., Barigazzi G., Kawaoka Y., and Webster R.G. Genetic reassortment between avian and human influenza A viruses in Italian pigs. Virology 193 1 (1993) 503-506
-
(1993)
Virology
, vol.193
, Issue.1
, pp. 503-506
-
-
Castrucci, M.R.1
Donatelli, I.2
Sidoli, L.3
Barigazzi, G.4
Kawaoka, Y.5
Webster, R.G.6
-
5
-
-
0036674782
-
Phylogenetic analysis of H1N2 isolates of influenza A virus from pigs in the United States
-
Choi Y.K., Goyal S.M., Farnham M.W., and Joo H.S. Phylogenetic analysis of H1N2 isolates of influenza A virus from pigs in the United States. Virus Res. 87 2 (2002) 173-179
-
(2002)
Virus Res.
, vol.87
, Issue.2
, pp. 173-179
-
-
Choi, Y.K.1
Goyal, S.M.2
Farnham, M.W.3
Joo, H.S.4
-
6
-
-
34247098490
-
Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe
-
de Jong J.C., Smith D.J., Lapedes A.S., Donatelli I., Campitelli L., Barigazzi G., Van Reeth K., Jones T.C., Rimmelzwaan G.F., Osterhaus A.D., and Fouchier R.A. Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe. J. Virol. 81 8 (2007) 4315-4322
-
(2007)
J. Virol.
, vol.81
, Issue.8
, pp. 4315-4322
-
-
de Jong, J.C.1
Smith, D.J.2
Lapedes, A.S.3
Donatelli, I.4
Campitelli, L.5
Barigazzi, G.6
Van Reeth, K.7
Jones, T.C.8
Rimmelzwaan, G.F.9
Osterhaus, A.D.10
Fouchier, R.A.11
-
7
-
-
0019797407
-
Evolutionary trees from DNA sequences: a maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 6 (1981) 368-376
-
(1981)
J. Mol. Evol.
, vol.17
, Issue.6
, pp. 368-376
-
-
Felsenstein, J.1
-
8
-
-
0036094818
-
An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks
-
Gaunt M.W., and Miles M.A. An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks. Mol. Biol. Evol. 19 5 (2002) 748-761
-
(2002)
Mol. Biol. Evol.
, vol.19
, Issue.5
, pp. 748-761
-
-
Gaunt, M.W.1
Miles, M.A.2
-
9
-
-
0346373759
-
Unifying the epidemiological and evolutionary dynamics of pathogens
-
Grenfell B.T., Pybus O.G., Gog J.R., Wood J.L., Daly J.M., Mumford J.A., and Holmes E.C. Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303 5656 (2004) 327-332
-
(2004)
Science
, vol.303
, Issue.5656
, pp. 327-332
-
-
Grenfell, B.T.1
Pybus, O.G.2
Gog, J.R.3
Wood, J.L.4
Daly, J.M.5
Mumford, J.A.6
Holmes, E.C.7
-
10
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 5 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
11
-
-
0035942198
-
Estimating risks in declining populations with poor data
-
Holmes E.E. Estimating risks in declining populations with poor data. Proc. Natl. Acad. Sci. U.S.A. 98 9 (2001) 5072-5077
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, Issue.9
, pp. 5072-5077
-
-
Holmes, E.E.1
-
12
-
-
33748672063
-
Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B
-
Hon C.C., Lam T.Y., Drummond A., Rambaut A., Lee Y.F., Yip C.W., Zeng F., Lam P.Y., Ng P.T., and Leung F.C. Phylogenetic analysis reveals a correlation between the expansion of very virulent infectious bursal disease virus and reassortment of its genome segment B. J. Virol. 80 17 (2006) 8503-8509
-
(2006)
J. Virol.
, vol.80
, Issue.17
, pp. 8503-8509
-
-
Hon, C.C.1
Lam, T.Y.2
Drummond, A.3
Rambaut, A.4
Lee, Y.F.5
Yip, C.W.6
Zeng, F.7
Lam, P.Y.8
Ng, P.T.9
Leung, F.C.10
-
13
-
-
0030902563
-
Phylogenetic methods come of age: testing hypotheses in an evolutionary context
-
Huelsenbeck J.P., and Rannala B. Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276 5310 (1997) 227-232
-
(1997)
Science
, vol.276
, Issue.5310
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
14
-
-
0031820637
-
Molecular basis for the generation in pigs of influenza A viruses with pandemic potential
-
Ito T., Couceiro J.N., Kelm S., Baum L.G., Krauss S., Castrucci M.R., Donatelli I., Kida H., Paulson J.C., Webster R.G., and Kawaoka Y. Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J. Virol. 72 9 (1998) 7367-7373
-
(1998)
J. Virol.
, vol.72
, Issue.9
, pp. 7367-7373
-
-
Ito, T.1
Couceiro, J.N.2
Kelm, S.3
Baum, L.G.4
Krauss, S.5
Castrucci, M.R.6
Donatelli, I.7
Kida, H.8
Paulson, J.C.9
Webster, R.G.10
Kawaoka, Y.11
-
15
-
-
0031668553
-
Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan
-
Ito T., Kawaoka Y., Vines A., Ishikawa H., Asai T., and Kida H. Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan. Arch. Virol. 143 9 (1998) 1773-1782
-
(1998)
Arch. Virol.
, vol.143
, Issue.9
, pp. 1773-1782
-
-
Ito, T.1
Kawaoka, Y.2
Vines, A.3
Ishikawa, H.4
Asai, T.5
Kida, H.6
-
16
-
-
0000667845
-
Receptors of influenza A viruses. Implications for the role of pigs in the generation of pandemic human influenza viruses
-
Brown L.E., Hampson A.W., and Webster R.G. (Eds), Elsevier Science, Amsterdam
-
Ito T., Kida H., and Kawaoka Y. Receptors of influenza A viruses. Implications for the role of pigs in the generation of pandemic human influenza viruses. In: Brown L.E., Hampson A.W., and Webster R.G. (Eds). In Options for the Control of Influenza III (1996), Elsevier Science, Amsterdam 516-519
-
(1996)
In Options for the Control of Influenza III
, pp. 516-519
-
-
Ito, T.1
Kida, H.2
Kawaoka, Y.3
-
17
-
-
0036147047
-
Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis
-
Jenkins G.M., Rambaut A., Pybus O.G., and Holmes E.C. Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J. Mol. Evol. 54 2 (2002) 156-165
-
(2002)
J. Mol. Evol.
, vol.54
, Issue.2
, pp. 156-165
-
-
Jenkins, G.M.1
Rambaut, A.2
Pybus, O.G.3
Holmes, E.C.4
-
18
-
-
0032104647
-
Influence of host species on the evolution of the nonstructural (NS) gene of influenza A viruses
-
Kawaoka Y., Gorman O.T., Ito T., Wells K., Donis R.O., Castrucci M.R., Donatelli I., and Webster R.G. Influence of host species on the evolution of the nonstructural (NS) gene of influenza A viruses. Virus Res. 55 2 (1998) 143-156
-
(1998)
Virus Res.
, vol.55
, Issue.2
, pp. 143-156
-
-
Kawaoka, Y.1
Gorman, O.T.2
Ito, T.3
Wells, K.4
Donis, R.O.5
Castrucci, M.R.6
Donatelli, I.7
Webster, R.G.8
-
19
-
-
0028104105
-
Potential for transmission of avian influenza viruses to pigs
-
Kida H., Ito T., Yasuda J., Shimizu Y., Itakura C., Shortridge K.F., Kawaoka Y., and Webster R.G. Potential for transmission of avian influenza viruses to pigs. J. Gen. Virol. 75 Pt 9 (1994) 2183-2188
-
(1994)
J. Gen. Virol.
, vol.75
, Issue.PART 9
, pp. 2183-2188
-
-
Kida, H.1
Ito, T.2
Yasuda, J.3
Shimizu, Y.4
Itakura, C.5
Shortridge, K.F.6
Kawaoka, Y.7
Webster, R.G.8
-
20
-
-
24644432882
-
Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain
-
Lemey P., Derdelinckx I., Rambaut A., Van Laethem K., Dumont S., Vermeulen S., Van Wijngaerden E., and Vandamme A.M. Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain. J. Virol. 79 18 (2005) 11981-11989
-
(2005)
J. Virol.
, vol.79
, Issue.18
, pp. 11981-11989
-
-
Lemey, P.1
Derdelinckx, I.2
Rambaut, A.3
Van Laethem, K.4
Dumont, S.5
Vermeulen, S.6
Van Wijngaerden, E.7
Vandamme, A.M.8
-
21
-
-
33847246314
-
Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
-
Lemey P., Kosakovsky Pond S.L., Drummond A.J., Pybus O.G., Shapiro B., Barroso H., Taveira N., and Rambaut A. Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics. PLoS Comput. Biol. 3 2 (2007) e29
-
(2007)
PLoS Comput. Biol.
, vol.3
, Issue.2
-
-
Lemey, P.1
Kosakovsky Pond, S.L.2
Drummond, A.J.3
Pybus, O.G.4
Shapiro, B.5
Barroso, H.6
Taveira, N.7
Rambaut, A.8
-
22
-
-
0242475196
-
Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions
-
Lemey P., Salemi M., Wang B., Duffy M., Hall W.H., Saksena N.K., and Vandamme A.M. Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions. FEMS Immunol. Med. Microbiol. 39 2 (2003) 125-132
-
(2003)
FEMS Immunol. Med. Microbiol.
, vol.39
, Issue.2
, pp. 125-132
-
-
Lemey, P.1
Salemi, M.2
Wang, B.3
Duffy, M.4
Hall, W.H.5
Saksena, N.K.6
Vandamme, A.M.7
-
23
-
-
0036208457
-
Antigenic and genetic diversity among swine influenza A H1N1 and H1N2 viruses in Europe
-
Marozin S., Gregory V., Cameron K., Bennett M., Valette M., Aymard M., Foni E., Barigazzi G., Lin Y., and Hay A. Antigenic and genetic diversity among swine influenza A H1N1 and H1N2 viruses in Europe. J. Gen. Virol. 83 Pt 4 (2002) 735-745
-
(2002)
J. Gen. Virol.
, vol.83
, Issue.PART 4
, pp. 735-745
-
-
Marozin, S.1
Gregory, V.2
Cameron, K.3
Bennett, M.4
Valette, M.5
Aymard, M.6
Foni, E.7
Barigazzi, G.8
Lin, Y.9
Hay, A.10
-
24
-
-
38649087722
-
-
NCBI, National Center for Biotechnology Information. Influenza Virus Resource, 2004 Nov 17. Available from http://www.ncbi.nlm.nih.gov/genomes/FLU/.
-
NCBI, National Center for Biotechnology Information. Influenza Virus Resource, 2004 Nov 17. Available from http://www.ncbi.nlm.nih.gov/genomes/FLU/.
-
-
-
-
25
-
-
0037053093
-
The emergence of novel swine influenza viruses in North America
-
Olsen C.W. The emergence of novel swine influenza viruses in North America. Virus Res. 85 2 (2002) 199-210
-
(2002)
Virus Res.
, vol.85
, Issue.2
, pp. 199-210
-
-
Olsen, C.W.1
-
26
-
-
0020457664
-
Human influenza A viruses in pigs: isolation of a H3N2 strain antigenically related to A/England/42/72 and evidence for continuous circulation of human viruses in the pig population
-
Ottis K., Sidoli L., Bachmann P.A., Webster R.G., and Kaplan M.M. Human influenza A viruses in pigs: isolation of a H3N2 strain antigenically related to A/England/42/72 and evidence for continuous circulation of human viruses in the pig population. Arch. Virol. 73 2 (1982) 103-108
-
(1982)
Arch. Virol.
, vol.73
, Issue.2
, pp. 103-108
-
-
Ottis, K.1
Sidoli, L.2
Bachmann, P.A.3
Webster, R.G.4
Kaplan, M.M.5
-
27
-
-
9444272187
-
Large outbreak of swine influenza in southern Japan caused by reassortant (H1N2) influenza viruses: its epizootic background and characterization of the causative viruses
-
Ouchi A., Nerome K., Kanegae Y., Ishida M., Nerome R., Hayashi K., Hashimoto T., Kaji M., Kaji Y., and Inaba Y. Large outbreak of swine influenza in southern Japan caused by reassortant (H1N2) influenza viruses: its epizootic background and characterization of the causative viruses. J. Gen. Virol. 77 Pt 8 (1996) 1751-1759
-
(1996)
J. Gen. Virol.
, vol.77
, Issue.PART 8
, pp. 1751-1759
-
-
Ouchi, A.1
Nerome, K.2
Kanegae, Y.3
Ishida, M.4
Nerome, R.5
Hayashi, K.6
Hashimoto, T.7
Kaji, M.8
Kaji, Y.9
Inaba, Y.10
-
28
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
Pagel M. Inferring the historical patterns of biological evolution. Nature 401 6756 (1999) 877-884
-
(1999)
Nature
, vol.401
, Issue.6756
, pp. 877-884
-
-
Pagel, M.1
-
29
-
-
27144453692
-
The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses
-
Parrish C.R., and Kawaoka Y. The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu. Rev. Microbiol. 59 (2005) 553-586
-
(2005)
Annu. Rev. Microbiol.
, vol.59
, pp. 553-586
-
-
Parrish, C.R.1
Kawaoka, Y.2
-
30
-
-
0034044313
-
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies
-
Rambaut A. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 16 4 (2000) 395-399
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 395-399
-
-
Rambaut, A.1
-
31
-
-
0031966291
-
Estimating divergence dates from molecular sequences
-
Rambaut A., and Bromham L. Estimating divergence dates from molecular sequences. Mol. Biol. Evol. 15 4 (1998) 442-448
-
(1998)
Mol. Biol. Evol.
, vol.15
, Issue.4
, pp. 442-448
-
-
Rambaut, A.1
Bromham, L.2
-
32
-
-
23844484143
-
Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS
-
Salemi M., Lamers S.L., Yu S., de Oliveira T., Fitch W.M., and McGrath M.S. Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS. J. Virol. 79 17 (2005) 11343-11352
-
(2005)
J. Virol.
, vol.79
, Issue.17
, pp. 11343-11352
-
-
Salemi, M.1
Lamers, S.L.2
Yu, S.3
de Oliveira, T.4
Fitch, W.M.5
McGrath, M.S.6
-
33
-
-
3042643030
-
Molecular epidemiology of porcine H3N2 influenza A viruses isolated in Germany between 1982 and 2001
-
Schrader C., and Suss J. Molecular epidemiology of porcine H3N2 influenza A viruses isolated in Germany between 1982 and 2001. Intervirology 47 2 (2004) 72-77
-
(2004)
Intervirology
, vol.47
, Issue.2
, pp. 72-77
-
-
Schrader, C.1
Suss, J.2
-
34
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
35
-
-
0019271568
-
Surveillance of influenza in pig herds in Czechoslovakia in 1974-1979. 1. Introduction of influenza epidemic A (H3N2) viruses into pig herds
-
Tumova B., Veznikova D., Mensik J., and Stumpa A. Surveillance of influenza in pig herds in Czechoslovakia in 1974-1979. 1. Introduction of influenza epidemic A (H3N2) viruses into pig herds. Zentralbl. Veterinarmed. B 27 7 (1980) 517-523
-
(1980)
Zentralbl. Veterinarmed. B
, vol.27
, Issue.7
, pp. 517-523
-
-
Tumova, B.1
Veznikova, D.2
Mensik, J.3
Stumpa, A.4
-
36
-
-
2442587211
-
Genetic relationships, serological cross-reaction and cross-protection between H1N2 and other influenza A virus subtypes endemic in European pigs
-
van Reeth K.V., Brown I., Essen S., and Pensaert M. Genetic relationships, serological cross-reaction and cross-protection between H1N2 and other influenza A virus subtypes endemic in European pigs. Virus Res. 103 1/2 (2004) 115-124
-
(2004)
Virus Res.
, vol.103
, Issue.1-2
, pp. 115-124
-
-
van Reeth, K.V.1
Brown, I.2
Essen, S.3
Pensaert, M.4
-
37
-
-
33745802348
-
Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43
-
Vijgen L., Keyaerts E., Lemey P., Maes P., Van Reeth K., Nauwynck H., Pensaert M., and Van Ranst M. Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalomyelitis virus, bovine coronavirus, and human coronavirus OC43. J. Virol. 80 14 (2006) 7270-7274
-
(2006)
J. Virol.
, vol.80
, Issue.14
, pp. 7270-7274
-
-
Vijgen, L.1
Keyaerts, E.2
Lemey, P.3
Maes, P.4
Van Reeth, K.5
Nauwynck, H.6
Pensaert, M.7
Van Ranst, M.8
-
38
-
-
0026576063
-
Evolution and ecology of influenza A viruses
-
Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., and Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56 1 (1992) 152-179
-
(1992)
Microbiol. Rev.
, vol.56
, Issue.1
, pp. 152-179
-
-
Webster, R.G.1
Bean, W.J.2
Gorman, O.T.3
Chambers, T.M.4
Kawaoka, Y.5
-
40
-
-
20144362109
-
Molecular dating when rates vary
-
Welch J.J., and Bromham L. Molecular dating when rates vary. Trends Ecol. Evol. 20 6 (2005) 320-327
-
(2005)
Trends Ecol. Evol.
, vol.20
, Issue.6
, pp. 320-327
-
-
Welch, J.J.1
Bromham, L.2
-
41
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 5 (1997) 555-556
-
(1997)
Comput. Appl. Biosci.
, vol.13
, Issue.5
, pp. 555-556
-
-
Yang, Z.1
-
42
-
-
0033933640
-
Estimation of primate speciation dates using local molecular clocks
-
Yoder A.D., and Yang Z. Estimation of primate speciation dates using local molecular clocks. Mol. Biol. Evol. 17 7 (2000) 1081-1090
-
(2000)
Mol. Biol. Evol.
, vol.17
, Issue.7
, pp. 1081-1090
-
-
Yoder, A.D.1
Yang, Z.2
-
43
-
-
0344118228
-
Genetic reassortment of avian, swine, and human influenza A viruses in American pigs
-
Zhou N.N., Senne D.A., Landgraf J.S., Swenson S.L., Erickson G., Rossow K., Liu L., Yoon K., Krauss S., and Webster R.G. Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J. Virol. 73 10 (1999) 8851-8856
-
(1999)
J. Virol.
, vol.73
, Issue.10
, pp. 8851-8856
-
-
Zhou, N.N.1
Senne, D.A.2
Landgraf, J.S.3
Swenson, S.L.4
Erickson, G.5
Rossow, K.6
Liu, L.7
Yoon, K.8
Krauss, S.9
Webster, R.G.10
|