-
1
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi, A-L. and Albert, R. (1999) 'Emergence of scaling in random networks', Science, Vol. 286, No. 5439, pp.509-512.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 509-512
-
-
Barabasi, A.-L.1
Albert, R.2
-
2
-
-
24744435534
-
Kernel methods for predicting protein-protein interactions
-
Ben-Hur, A. and Noble, W.S. (2005) 'Kernel methods for predicting protein-protein interactions', Bioinformatics, Vol. 21, Suppl. 1, pp.i38-i46.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 1
-
-
Ben-Hur, A.1
Noble, W.S.2
-
3
-
-
0001907967
-
Support vector machines: Hype or hallelujah?
-
Bennet, K.P. and Campbell, C. (2000) 'Support vector machines: hype or hallelujah?', ACM SIGKDD Explorations, Vol. 2, pp.1-13.
-
(2000)
ACM SIGKDD Explorations
, vol.2
, pp. 1-13
-
-
Bennet, K.P.1
Campbell, C.2
-
4
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock, J.R. and Gough, D.A. (2001) 'Predicting protein-protein interactions from primary structure', Bioinformatics, Vol. 17, No. 5, pp.455-460.
-
(2001)
Bioinformatics
, vol.17
, Issue.5
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
5
-
-
0037255072
-
The swiss-prot protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M-C., Estreicher, A., Gasteiger, E., Martin, M.J., Michoud, K., O'Donovan, C., Phan, I., Pilbout, S. and Schneider, M. (2003) 'The swiss-prot protein knowledgebase and its supplement TrEMBL in 2003', Nucleic Acids Res., Vol. 31, pp.365-370.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.-C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
6
-
-
33644755784
-
Prediction of B-strand packing interaction using the signature product
-
Brown, W.M., Martin, S., Chabarek, J.P., Strauss, C. and Faulon, J-L. (2005) 'Prediction of B-strand packing interaction using the signature product', Journal of Molecular Modeling, Vol. 12, No. 3, pp.355-361.
-
(2005)
Journal of Molecular Modeling
, vol.12
, Issue.3
, pp. 355-361
-
-
Brown, W.M.1
Martin, S.2
Chabarek, J.P.3
Strauss, C.4
Faulon, J.-L.5
-
7
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges, C.J.C. (1998) 'A tutorial on support vector machines for pattern recognition', Knowl. Discov. Data Mining, Vol. 2, pp.121-167.
-
(1998)
Knowl. Discov. Data Mining
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
8
-
-
0035105997
-
NompA encodes a PNS-specific, ZP domain protein required to connect mechanosensory dendrites to sensory structures
-
Chung, Y.D., Zhu, J., Han, Y. and Kernan, M.J. (2001) 'NompA encodes a PNS-specific, ZP domain protein required to connect mechanosensory dendrites to sensory structures', Neuron, Vol. 29, No. 2, pp.415-428.
-
(2001)
Neuron
, vol.29
, Issue.2
, pp. 415-428
-
-
Chung, Y.D.1
Zhu, J.2
Han, Y.3
Kernan, M.J.4
-
10
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
Dandekar, T., Snel, B., Huynen, M. and Bork, P. (1998) 'Conservation of gene order: a fingerprint of proteins that physically interact', Trends Biochem. Sci., Vol. 23, No. 9, pp.324-328.
-
(1998)
Trends Biochem. Sci
, vol.23
, Issue.9
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
11
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright, A.J., Iliopoulos, I., Kyrpides, N.C. and Ouzounis, C.A. (1999) 'Protein interaction maps for complete genomes based on gene fusion events', Nature, Vol. 402, No. 6757, pp.86-90.
-
(1999)
Nature
, vol.402
, Issue.6757
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
12
-
-
0038173400
-
The signature molecular descriptor. 2. Enumerating molecules from their extended valence sequences
-
Faulon, J.L., Churchwell, C.J. and Visco, J.D.P. (2003a) 'The signature molecular descriptor. 2. Enumerating molecules from their extended valence sequences', J. Chem. Inf. Comput. Sci., Vol. 43, No. 3, pp.721-734.
-
(2003)
J. Chem. Inf. Comput. Sci
, vol.43
, Issue.3
, pp. 721-734
-
-
Faulon, J.L.1
Churchwell, C.J.2
Visco, J.D.P.3
-
13
-
-
0038579386
-
The signature molecular descriptor. 1. Using extended valence sequences in QSAR and QSPR studies
-
Faulon, J.L., Visco Jr., D.P. and Pophale, R.S. (2003b) 'The signature molecular descriptor. 1. Using extended valence sequences in QSAR and QSPR studies', J. Chem. Inf. Comput. Sci., Vol. 43, No. 3, pp.707-720.
-
(2003)
J. Chem. Inf. Comput. Sci
, vol.43
, Issue.3
, pp. 707-720
-
-
Faulon, J.L.1
Visco Jr., D.P.2
Pophale, R.S.3
-
14
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields, S. and Song, O. (1989) 'A novel genetic system to detect protein-protein interactions', Nature, Vol. 340, No. 6230, pp.245, 246.
-
(1989)
Nature
, vol.340
, Issue.6230
-
-
Fields, S.1
Song, O.2
-
15
-
-
0345600247
-
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C.A., Finley Jr., R.L., White, K.P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R.A., McKenna, M.P., Chant, J. and Rothberg, J.M. (2003) 'A protein interaction map of Drosophila melanogaster', Science, 302, No. 5651, pp.1727-1736.
-
Giot, L., Bader, J.S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y.L., Ooi, C.E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C.A., Finley Jr., R.L., White, K.P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R.A., McKenna, M.P., Chant, J. and Rothberg, J.M. (2003) 'A protein interaction map of Drosophila melanogaster', Science, Vol. 302, No. 5651, pp.1727-1736.
-
-
-
-
16
-
-
0034595516
-
Co-evolution of proteins with their interaction partners
-
Goh, C.S., Bogan, A.A., Joachimiak, M., Walther, D. and Cohen, F.E. (2000) 'Co-evolution of proteins with their interaction partners', J. Mol. Biol., Vol. 299, No. 2, pp.283-293.
-
(2000)
J. Mol. Biol
, vol.299
, Issue.2
, pp. 283-293
-
-
Goh, C.S.1
Bogan, A.A.2
Joachimiak, M.3
Walther, D.4
Cohen, F.E.5
-
17
-
-
0037050004
-
-
Ho, Y., Gruhler, A., Heilbut, A., Bader, G.D., Moore, L., Adams, S.L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., Vo, M., Taggart, J., Goudreault, M., Muskat, B., Alfarano, C., Dewar, D., Lin, Z., Michalickova, K., Willems, A.R., Sassi, H., Nielsen, P.A., Rasmussen, K.J., Andersen, J.R., Johansen, L.E., Hansen, L.H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B.D., Matthiesen, J., Hendrickson, R.C., Gleeson, F., Pawson, T., Moran, M.F., Durocher, D., Mann, M., Hogue, C.W., Figeys, D. and Tyers, M. (2002) 'Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry', Nature, 415, No. 6868, pp.180-183.
-
Ho, Y., Gruhler, A., Heilbut, A., Bader, G.D., Moore, L., Adams, S.L., Millar, A., Taylor, P., Bennett, K., Boutilier, K., Yang, L., Wolting, C., Donaldson, I., Schandorff, S., Shewnarane, J., Vo, M., Taggart, J., Goudreault, M., Muskat, B., Alfarano, C., Dewar, D., Lin, Z., Michalickova, K., Willems, A.R., Sassi, H., Nielsen, P.A., Rasmussen, K.J., Andersen, J.R., Johansen, L.E., Hansen, L.H., Jespersen, H., Podtelejnikov, A., Nielsen, E., Crawford, J., Poulsen, V., Sorensen, B.D., Matthiesen, J., Hendrickson, R.C., Gleeson, F., Pawson, T., Moran, M.F., Durocher, D., Mann, M., Hogue, C.W., Figeys, D. and Tyers, M. (2002) 'Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry', Nature, Vol. 415, No. 6868, pp.180-183.
-
-
-
-
18
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S.P. et al. (2001) 'Lethality and centrality in protein networks', Nature, Vol. 411, No. 6833, pp.41, 42.
-
(2001)
Nature
, vol.411
, Issue.6833
-
-
Jeong, H.1
Mason, S.P.2
-
19
-
-
0034609791
-
The large-scale organization of metabolic networks
-
Jeong, H., Tombor, B., Albert, R., Oltvai, Z.N. and Barabasi, A.L. (2000) 'The large-scale organization of metabolic networks', Nature, Vol. 407, No. 6804, pp.651-654.
-
(2000)
Nature
, vol.407
, Issue.6804
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabasi, A.L.5
-
20
-
-
0002714543
-
Making large-scale SVM learning pratical
-
Scholkopf, B, Burges, C.J.C. and Smola, A.J, Eds, MIT Press, Cambridge, MA, pp
-
Joachims, T. (1999) 'Making large-scale SVM learning pratical', in Scholkopf, B., Burges, C.J.C. and Smola, A.J. (Eds.): Advances in Kernel Methods-Support Vector Learning, MIT Press, Cambridge, MA, pp.169-184.
-
(1999)
Advances in Kernel Methods-Support Vector Learning
, pp. 169-184
-
-
Joachims, T.1
-
21
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte, E.M., Pellegrini, M., Ng, H.L., Rice, D.W., Yeates, T.O. and Eisenberg, D. (1999) 'Detecting protein function and protein-protein interactions from genome sequences', Science, Vol. 285, No. 5428, pp.751-753.
-
(1999)
Science
, vol.285
, Issue.5428
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
22
-
-
13444262436
-
Predicting protein-protein interactions using signature products
-
Martin, S., Roe, D.C. and Faulon, J-L. (2005) 'Predicting protein-protein interactions using signature products', Bioinformatics, Vol. 21, No. 2, pp.218-226.
-
(2005)
Bioinformatics
, vol.21
, Issue.2
, pp. 218-226
-
-
Martin, S.1
Roe, D.C.2
Faulon, J.-L.3
-
23
-
-
84960612715
-
C-type virus released from cultured human rhabdomyosarcoma cells
-
McAllister, R.M., Nicolson, M., Gardener, M.B., Rongey, R.W., Rasheed, S., Sarma, P.S., Huebner, R.J., Hatanaka, M., Oroszian, S., Gilden, R.V., Kabigting, A. and Vernon, L. (1972) 'C-type virus released from cultured human rhabdomyosarcoma cells', Nat. New Biol., Vol. 235, pp.3-6.
-
(1972)
Nat. New Biol
, vol.235
, pp. 3-6
-
-
McAllister, R.M.1
Nicolson, M.2
Gardener, M.B.3
Rongey, R.W.4
Rasheed, S.5
Sarma, P.S.6
Huebner, R.J.7
Hatanaka, M.8
Oroszian, S.9
Gilden, R.V.10
Kabigting, A.11
Vernon, L.12
-
24
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
Pazos, F. and Valencia, A. (2001) 'Similarity of phylogenetic trees as indicator of protein-protein interaction', Protein Eng., Vol. 14, No. 9, pp.609-614.
-
(2001)
Protein Eng
, vol.14
, Issue.9
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
25
-
-
0020566096
-
Characterization of a differentiated cat melanoma cell line
-
Rasheed, S. (1983) 'Characterization of a differentiated cat melanoma cell line', Cancer Res., Vol. 43, pp.3379-3384.
-
(1983)
Cancer Res
, vol.43
, pp. 3379-3384
-
-
Rasheed, S.1
-
26
-
-
18144390872
-
Is melanoma a stem cell tumor? Identification of neurogenic proteins in trans-differentiated cells
-
Rasheed, S., Mao, Z., Chan, J.M. and Chan, L.S. (2005) 'Is melanoma a stem cell tumor? Identification of neurogenic proteins in trans-differentiated cells', J. Transl. Med., Vol. 3, No. 1, p.14.
-
(2005)
J. Transl. Med
, vol.3
, Issue.1
, pp. 14
-
-
Rasheed, S.1
Mao, Z.2
Chan, J.M.3
Chan, L.S.4
-
27
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B. and Ideker, T. (2003) 'Cytoscape: a software environment for integrated models of biomolecular interaction networks', Genome Res., Vol. 13, No. 11, pp.2498-2504.
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
28
-
-
0035943340
-
Correlated sequence-signatures as markers of protein-protein interaction
-
Sprinzak, E. and Margalit, H. (2001) 'Correlated sequence-signatures as markers of protein-protein interaction', J. Mol. Biol., Vol. 311, No. 4, pp.681-692.
-
(2001)
J. Mol. Biol
, vol.311
, Issue.4
, pp. 681-692
-
-
Sprinzak, E.1
Margalit, H.2
-
29
-
-
0035860499
-
Global analysis of protein activities using proteome chips
-
Zhu, H., Bilgin, M., Bangham, R., Hall, D., Casamayor, A., Bertone, P., Lan, N., Jansen, R., Bidlingmaier, S., Houfek, T., Mitchell, T., Miller, P., Dean, R.A., Gerstein, M. and Snyder, M. (2001) 'Global analysis of protein activities using proteome chips', Science, Vol. 293, No. 5537, pp.2101-2105.
-
(2001)
Science
, vol.293
, Issue.5537
, pp. 2101-2105
-
-
Zhu, H.1
Bilgin, M.2
Bangham, R.3
Hall, D.4
Casamayor, A.5
Bertone, P.6
Lan, N.7
Jansen, R.8
Bidlingmaier, S.9
Houfek, T.10
Mitchell, T.11
Miller, P.12
Dean, R.A.13
Gerstein, M.14
Snyder, M.15
|