-
1
-
-
0008046960
-
Combinatorial optimization with rational objective functions: A communication
-
Ahuja,R. et al. (1983) Combinatorial optimization with rational objective functions: A communication. Math. Oper. Res., 8, 314.
-
(1983)
Math. Oper. Res
, vol.8
, pp. 314
-
-
Ahuja, R.1
-
2
-
-
13444282425
-
-
2005The Stanford Microarray Database accommodates additional microarray platforms and data formats, Database issue, D580-D582
-
Ball,C. et al. (2005)The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res. 33 (Database issue), D580-D582.
-
Nucleic Acids Res
, vol.33
-
-
Ball, C.1
-
3
-
-
13444304325
-
-
NCBI GEO: Mining millions of expression profiles-database and tools, Database issue, D562-D566
-
Barrett,T. et al. (2005) NCBI GEO: Mining millions of expression profiles-database and tools. Nucleic Acids Res., 33 (Database issue), D562-D566.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Barrett, T.1
-
4
-
-
0347968038
-
-
Craigon,D. et al. (2004) NASC Arrays: A repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32 (Database issue), D575-D577.
-
Craigon,D. et al. (2004) NASC Arrays: A repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32 (Database issue), D575-D577.
-
-
-
-
5
-
-
22744458472
-
Pathways to the analysis of microarray data
-
Curtis,R. et al. (2005) Pathways to the analysis of microarray data. Trends Biotechnol., 23, 429-435.
-
(2005)
Trends Biotechnol
, vol.23
, pp. 429-435
-
-
Curtis, R.1
-
6
-
-
0036578644
-
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
-
Dahlquist,K. et al. (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat. Genet., 31, 19-20.
-
(2002)
Nat. Genet
, vol.31
, pp. 19-20
-
-
Dahlquist, K.1
-
7
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisiJ. et al. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisiJ1
-
8
-
-
0037293075
-
Global functional profiling of gene expression
-
Draghici,S. et al. (2003) Global functional profiling of gene expression. Genomics, 81, 98-104.
-
(2003)
Genomics
, vol.81
, pp. 98-104
-
-
Draghici, S.1
-
9
-
-
0024107868
-
Relaxed heaps: An alternative to Fibonacci heaps with applications to parallel computation
-
Driscoll,J. et al. (1988) Relaxed heaps: An alternative to Fibonacci heaps with applications to parallel computation. Commmun. ACM, 31, 1343-1354.
-
(1988)
Commmun. ACM
, vol.31
, pp. 1343-1354
-
-
Driscoll, J.1
-
10
-
-
0039552100
-
Three 4-coumarate:cOenzyme A ligases in Arabidapsis thaliana represent two evolutionarily divergent classes in angiosperms
-
Ehlting,J. et al. (1999) Three 4-coumarate:cOenzyme A ligases in Arabidapsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J, 19, 9-20.
-
(1999)
Plant J
, vol.19
, pp. 9-20
-
-
Ehlting, J.1
-
11
-
-
0032108018
-
Finding the k shortest paths
-
Eppstein,D. (1998) Finding the k shortest paths. SIAM J. Computing, 28, 652-673.
-
(1998)
SIAM J. Computing
, vol.28
, pp. 652-673
-
-
Eppstein, D.1
-
13
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch,A. et al. (2000) Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell, 11 4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.1
-
14
-
-
0038014879
-
-
Hanisch,D. et al. (2002) Co-clustering of biological networks and gene expression data. Bioinformatics, 18 (Suppl. 1), S145-S154. 1
-
Hanisch,D. et al. (2002) Co-clustering of biological networks and gene expression data. Bioinformatics, 18 (Suppl. 1), S145-S154. 1
-
-
-
-
15
-
-
2642594056
-
Investigation of two yeast genes encoding putative isoenzymes of phosphoglycerate mutase
-
Hemisch,J. et al. (1988) Investigation of two yeast genes encoding putative isoenzymes of phosphoglycerate mutase. Yeast, 14, 203-213.
-
(1988)
Yeast
, vol.14
, pp. 203-213
-
-
Hemisch, J.1
-
16
-
-
33646895693
-
Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data
-
Huang,D. and Pan, W. (2006) Incorporating biological knowledge into distance-based clustering analysis of microarray gene expression data. Bioinformatics, 22, 1259-1268.
-
(2006)
Bioinformatics
, vol.22
, pp. 1259-1268
-
-
Huang, D.1
Pan, W.2
-
17
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes,T. et al. (2000) Functional discovery via a compendium of expression profiles. Cell, 102, 109-126.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.1
-
18
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker,T. et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science, 292 929-934.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
-
19
-
-
0346095291
-
Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
-
Ihmels,J. et al. (2004) Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nat. Biotechnol. 22, 86-92.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 86-92
-
-
Ihmels, J.1
-
20
-
-
33644874819
-
-
Kanchisa,M. et al. (2006) From genomics to chemical genomic s: New developments in KEGG. Nucleic Acids Res., 34 (Database issue), D354-D357.
-
Kanchisa,M. et al. (2006) From genomics to chemical genomic s: New developments in KEGG. Nucleic Acids Res., 34 (Database issue), D354-D357.
-
-
-
-
21
-
-
13444262374
-
-
EcoCyc: A comprehensive database resource for escherichia coli, Database issue, D334-D337
-
Keseler,I. et al. (2005) EcoCyc: A comprehensive database resource for escherichia coli. Nucleic Acids Res., 33 (Database issue), D334-D337.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Keseler, I.1
-
22
-
-
33646200155
-
Expression dynamics of a cellular metabolic network
-
Kharchenko,P. et al. (2005) Expression dynamics of a cellular metabolic network. Mol. Syst. Biol., 1, 2005. 0016.
-
(2005)
Mol. Syst. Biol
, vol.1
, pp. 0016
-
-
Kharchenko, P.1
-
23
-
-
0000685484
-
A procedure for computing the k best solutions to discrete optimization problem and its application to the shortest path problem
-
Lawler,E. (1972) A procedure for computing the k best solutions to discrete optimization problem and its application to the shortest path problem. Manage. Sci., 18, 401-405.
-
(1972)
Manage. Sci
, vol.18
, pp. 401-405
-
-
Lawler, E.1
-
24
-
-
23144431919
-
-
PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways, Web Server issue, W633-W637
-
Mlecnik,B. et al. (2005) PathwayExplorer: Web service for visualizing high-throughput expression data on biological pathways. Nucleic Acids Res., 33 (Web Server issue), W633-W637.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mlecnik, B.1
-
25
-
-
0038054341
-
PGC-l alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
Mootha,V. et al. (2003) PGC-l alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet., 34, 267-73.
-
(2003)
Nat. Genet
, vol.34
, pp. 267-273
-
-
Mootha, V.1
-
26
-
-
33645289673
-
Incorporating gene functions as priors in model-based clustering of microarray gene expression data
-
Pan,W. (2006) Incorporating gene functions as priors in model-based clustering of microarray gene expression data. Bioinformatics, 22, 795-801.
-
(2006)
Bioinformatics
, vol.22
, pp. 795-801
-
-
Pan, W.1
-
27
-
-
13444249955
-
-
Parkinson,H. et al. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 33 (Database issue), D553-D555.
-
Parkinson,H. et al. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 33 (Database issue), D553-D555.
-
-
-
-
28
-
-
0036372454
-
Exploring gene expression data with class scores
-
Pavlidis,P. et al. (2002) Exploring gene expression data with class scores. Pac. Symp. Biocomput., 474-485.
-
(2002)
Pac. Symp. Biocomput
, pp. 474-485
-
-
Pavlidis, P.1
-
29
-
-
0142035247
-
Genome-wide characterization of the lignification toolbox in Arabidopsis
-
Raes,J. et al. (2003) Genome-wide characterization of the lignification toolbox in Arabidopsis. Plant Physiol., 133, 1051-1071.
-
(2003)
Plant Physiol
, vol.133
, pp. 1051-1071
-
-
Raes, J.1
-
30
-
-
14644430468
-
-
Rahnenführer,J. et al. (2004) Calculating; the statistical significance of changes in pathway activity from gene expression data. Stat. Appl. Genet. Mol. Biol., 3, Article16.
-
Rahnenführer,J. et al. (2004) Calculating; the statistical significance of changes in pathway activity from gene expression data. Stat. Appl. Genet. Mol. Biol., 3, Article16.
-
-
-
-
31
-
-
0032478569
-
Hexokinase PII has a double cytosolic-nuclear localisation in Saccharomyces-cerevisiae
-
Randez-Gil,F. et al. (1988) Hexokinase PII has a double cytosolic-nuclear localisation in Saccharomyces-cerevisiae. FEBS Lett., 425, 475-478.
-
(1988)
FEBS Lett
, vol.425
, pp. 475-478
-
-
Randez-Gil, F.1
-
32
-
-
0035339662
-
The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae
-
Rodriguez,A. et al. (2001) The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae. Biochem. J., 356 (Pt 3), 625-631.
-
(2001)
Biochem. J
, vol.356
, Issue.PART 3
, pp. 625-631
-
-
Rodriguez, A.1
-
33
-
-
26444608611
-
Discovering statistimilly significant pathways in expression profiling studies
-
Tian,L. et al. (2005) Discovering statistimilly significant pathways in expression profiling studies. Proc. Natl Acad. Sci. USA 102, 13544-13549.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 13544-13549
-
-
Tian, L.1
-
34
-
-
14644436209
-
Extracting active pathways from gene expression data
-
Vert,J. and Kanehisa,M. (2003) Extracting active pathways from gene expression data. Bioinformatics, 19 (Suppl. 2), 11238-11244.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 2
, pp. 11238-11244
-
-
Vert, J.1
Kanehisa, M.2
-
35
-
-
0000663732
-
Finding thek-shortest loopless paths in a network
-
Yen,J. (1971) Finding thek-shortest loopless paths in a network. Manage Sci., 17, 712-716.
-
(1971)
Manage Sci
, vol.17
, pp. 712-716
-
-
Yen, J.1
-
36
-
-
27744448992
-
Network constrained clustering for gene microarray data
-
Zhu,D. et al. (2005) Network constrained clustering for gene microarray data. Bioinformatics, 21, 4014-4020.
-
(2005)
Bioinformatics
, vol.21
, pp. 4014-4020
-
-
Zhu, D.1
-
37
-
-
0034564487
-
Analysis of gene expression data with pathway scores
-
Zien,A. et al. (2000) Analysis of gene expression data with pathway scores. Proc. Int. Conf. Intell Syst. Mol. Biol., 8, 407-417.
-
(2000)
Proc. Int. Conf. Intell Syst. Mol. Biol
, vol.8
, pp. 407-417
-
-
Zien, A.1
|