The Stanford Microarray Database accommodates additional microarray platforms and data formats

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Ball, Catherine A ^a   Awad, Ihab A B ^a   Demeter, Janos ^a   Gollub, Jeremy ^a   Hebert, Joan M ^a   Hernandez Boussard, Tina ^a   Jin, Heng ^a   Matese, John C ^b   Nitzberg, Michael ^a   Wymore, Farrell ^a   Zachariah, Zachariah K ^a   Brown, Patrick O ^a,c   Sherlock, Gavin ^a  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b PRINCETON UNIVERSITY   (United States)

^c HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIGARETTE SMOKE; TRANSCRIPTOME;

ACCESS TO INFORMATION; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; DNA MICROARRAY; GENE EXPRESSION; GENETIC DATABASE; GENETIC RESOURCE; HUMAN; IMAGE ANALYSIS; INFORMATION RETRIEVAL; INTERNET; NERVE FIBER; NONHUMAN; PRIORITY JOURNAL; RESPIRATORY EPITHELIUM; SMOKING; STANFORD MICROARRAY DATABASE; ARRAYEXPRESS; BIOINFORMATICS; FACTUAL DATABASE; GENE EXPRESSION OMNIBUS; INFORMATION PROCESSING; STANDARD;

CALIFORNIA; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; GENE EXPRESSION PROFILING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SYSTEMS INTEGRATION;

EID: 13444282425     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki006     Document Type: Article

References (8)

1. Gollub,J., Ball,C.A., Binkley,G., Demeter,J., Finkelstein,D.B., Hebert,J.M., Hernandez-Boussard,T., Jin,H., Kaloper,M., Matese,J.C. et al. (2003) The Stanford Microarray Database: data access and quality assessment tools. Nucleic Acids Res., 31, 94-96.
2. Li,C. and Hung Wong,W. (2001) Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application. Genome Biol., 2, RESEARCH0032.
3. Brazma,A., Parkinson,H., Sarkans,U., Shojatalab,M., Vilo,J., Abeygunawardena,N., Holloway,E., Kapushesky,M., Kemmeren,P., Lara,G.G. et al. (2003) ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 31, 68-71.
4. Spellman,P.T., Miller,M., Stewart,J., Troup,C., Sarkans,U., Chervitz,S., Bernhart,D., Sherlock,G., Ball,C., Lepage,M. et al. (2002) Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol., 3, RESEARCH0046.
5. Brazma,A., Hingamp,P., Quackenbush,J., Sherlock,G., Spellman,P., Stoeckert,C., Aach,J., Ansorge,W., Ball,C.A., Causton,H.C. et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genet., 29 365-371.
6. Edgar,R. Domrachev,M. and Lash,A.E. (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res., 30, 207-210.
7. Wilkinson,M.D. and Links,M. (2002) BioMOBY: an open source biological web services proposal. Brief. Bioinform, 3, 331-341.
8. Rees,C.A., Demeter,J., Matese,J.M., Botstein,D. and Sherlock,G. (2004) GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics, 5, 141.