-
1
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
Elf J, Li G and Xie X S 2007 Probing transcription factor dynamics at the single-molecule level in a living cell Science 316 1191-4
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1191-1194
-
-
Elf, J.1
Li, G.2
Xie, X.S.3
-
2
-
-
0014945567
-
The lac repressor-operator interaction: 3. Kinetic studies
-
Riggs A D, Burgeoise S and Cohn M 1970 The lac repressor-operator interaction: 3. Kinetic studies J. Mol. Biol. 53 401-17
-
(1970)
J. Mol. Biol.
, vol.53
, Issue.3
, pp. 401-417
-
-
Riggs, A.D.1
Burgeoise, S.2
Cohn, M.3
-
3
-
-
0021905844
-
Diffusion-controlled macromolecular interactions
-
Berg O G and von Hippel P H 1985 Diffusion-controlled macromolecular interactions Annu. Rev. Biophys. Chem. 14 131-60
-
(1985)
Annu. Rev. Biophys. Chem.
, vol.14
, Issue.1
, pp. 131-160
-
-
Berg, O.G.1
Von Hippel, P.H.2
-
4
-
-
0032986554
-
One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements
-
Shimamoto N 1999 One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements J. Biol. Chem. 274 15293-6
-
(1999)
J. Biol. Chem.
, vol.274
, Issue.22
, pp. 15293-15296
-
-
Shimamoto, N.1
-
5
-
-
0036656143
-
How to get from a to B: Strategies for analysing protein motion on DNA
-
Halford S E and Szczelkun M D 2002 How to get from A to B: strategies for analysing protein motion on DNA Eur. Biophys. J. 31 257-6
-
(2002)
Eur. Biophys. J.
, vol.31
, Issue.4
, pp. 257-256
-
-
Halford, S.E.1
Szczelkun, M.D.2
-
6
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets? (Survey and Summary)
-
Halford S E and Marko J F 2004 How do site-specific DNA-binding proteins find their targets? (Survey and Summary) Nucl. Acids Res. 32 3040-52
-
(2004)
Nucl. Acids Res.
, vol.32
, Issue.10
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
7
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel P H and Berg O G 1989 Facilitated target location in biological systems J. Biol. Chem. 264 675-8
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
8
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids: 1. Models and theory
-
Berg O G, Winter R B and von Hippel P H 1981 Diffusion-driven mechanisms of protein translocation on nucleic acids: 1. Models and theory Biochemistry 20 6929-48
-
(1981)
Biochemistry
, vol.20
, Issue.24
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
9
-
-
0034387984
-
One- and three-dimensional pathways for proteins to reach specific DNA sites
-
Stanford N P, Szczelkun M D, Marko J F and Halford S E 2000 One- and three-dimensional pathways for proteins to reach specific DNA sites EMBO J. 19 6546-57
-
(2000)
EMBO J.
, vol.19
, Issue.23
, pp. 6546-6557
-
-
Stanford, N.P.1
Szczelkun, M.D.2
Marko, J.F.3
Halford, S.E.4
-
10
-
-
0035902776
-
Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites
-
Milsom S E, Halford S E, Embleton M L and Szczelkun M D 2001 Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites J. Mol. Biol. 311 515-27
-
(2001)
J. Mol. Biol.
, vol.311
, Issue.3
, pp. 515-527
-
-
Milsom, S.E.1
Halford, S.E.2
Embleton, M.L.3
Szczelkun, M.D.4
-
12
-
-
0033485539
-
Quantitative comparison of DNA looping in vitro and in vivo: Chromatin increases effective DNA flexibility at short distances
-
Ringrose L, Chabanis S, Angrand P O, Woodroofe C and Stewart A F 1999 Quantitative comparison of DNA looping in vitro and in vivo: chromatin increases effective DNA flexibility at short distances EMBO J. 18 6630-41
-
(1999)
EMBO J.
, vol.18
, Issue.23
, pp. 6630-6641
-
-
Ringrose, L.1
Chabanis, S.2
Angrand, P.O.3
Woodroofe, C.4
Stewart, A.F.5
-
13
-
-
0016302334
-
Diffusion controlled reaction rates in spheroidal geometry. Application to repressor-operator association and membrane bound enzymes
-
Richter P H and Eigen M 1974 Diffusion controlled reaction rates in spheroidal geometry. Application to repressor-operator association and membrane bound enzymes Biophys Chem. 2 255-63
-
(1974)
Biophys Chem.
, vol.2
, Issue.3
, pp. 255-263
-
-
Richter, P.H.1
Eigen, M.2
-
14
-
-
0021844161
-
Linear diffusion of restriction endonucleases on DNA
-
Ehbrecht H J et al 1985 Linear diffusion of restriction endonucleases on DNA J. Biol. Chem. 260 6160-6
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 6160-6166
-
-
Ehbrecht, H.J.1
Al, E.2
-
15
-
-
0020160863
-
Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence
-
Jack W E, Terry B J and Modrich P 1982 Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence Proc. Natl Acad. Sci. USA 79 4010-4
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, Issue.13
, pp. 4010-4014
-
-
Jack, W.E.1
Terry, B.J.2
Modrich, P.3
-
16
-
-
0032562139
-
Kinetic characterization of linear diffusion of the restriction endonuclease Eco RV on DNA
-
Jeltsch A and Pingoud A 1998 Kinetic characterization of linear diffusion of the restriction endonuclease Eco RV on DNA Biochemistry. 37 2160-9
-
(1998)
Biochemistry.
, vol.37
, Issue.8
, pp. 2160-2169
-
-
Jeltsch, A.1
Pingoud, A.2
-
17
-
-
0029790522
-
Linear diffusion of the restriction endonuclease Eco RV on DNA is essential for the in vivo function of the enzyme
-
Jeltsch A, Wenz C, Stahl J and Pingoud A 1996 Linear diffusion of the restriction endonuclease Eco RV on DNA is essential for the in vivo function of the enzyme EMBO J. 15 5104-11
-
(1996)
EMBO J.
, vol.15
, pp. 5104-5111
-
-
Jeltsch, A.1
Wenz, C.2
Stahl, J.3
Pingoud, A.4
-
18
-
-
0022381905
-
Facilitated diffusion during catalysis by Eco RI endonuclease. Nonspecific interactions in Eco RI catalysis
-
Terry B J, Jack W E and Modrich P 1985 Facilitated diffusion during catalysis by Eco RI endonuclease. Nonspecific interactions in Eco RI catalysis J. Biol. Chem. 260 13130-7
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 13130-13137
-
-
Terry, B.J.1
Jack, W.E.2
Modrich, P.3
-
20
-
-
10044223573
-
Kinetics of protein-DNA interaction: Facilitated target location in sequence-dependent potential
-
Slutsky M and Minry L A 2004 Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential Biophys. J. 87 4021-35
-
(2004)
Biophys. J.
, vol.87
, Issue.6
, pp. 4021-4035
-
-
Slutsky, M.1
Minry, L.A.2
-
21
-
-
4444236055
-
Kinetics of target site localization of a protein on DNA: A stochastic approach
-
Coppey M, Benichou O, Voituriez R and Moreau M 2004 Kinetics of target site localization of a protein on DNA: a stochastic approach Biophys. J. 87 1640-9
-
(2004)
Biophys. J.
, vol.87
, Issue.3
, pp. 1640-1649
-
-
Coppey, M.1
Benichou, O.2
Voituriez, R.3
Moreau, M.4
-
22
-
-
1042298812
-
Mechanical measurement of single-molecule binding rates: Kinetics of DNA Helix-destabilization by T4 gene 32 protein
-
Pant K, Karpel R L, Rouzina L and Williams M C 2004 Mechanical measurement of single-molecule binding rates: kinetics of DNA Helix-destabilization by T4 gene 32 protein J. Mol. Biol. 336 851-70
-
(2004)
J. Mol. Biol.
, vol.336
, Issue.4
, pp. 851-870
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, L.3
Williams, M.C.4
-
23
-
-
18844364649
-
Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: Single molecule force spectroscopy measurements
-
Pant K, Karpel R L, Rouzina L and Williams M C 2005 Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: single molecule force spectroscopy measurements J. Mol. Biol. 349 317-30
-
(2005)
J. Mol. Biol.
, vol.349
, Issue.2
, pp. 317-330
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, L.3
Williams, M.C.4
-
25
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
Robertson G et al 2007 Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing Nature Method 4 651
-
(2007)
Nature Method
, vol.4
, Issue.8
, pp. 651
-
-
Robertson, G.1
Al, E.2
-
26
-
-
14944374038
-
Genome-wide prediction and analysis of function-specific transcription factor binding sites
-
Long F et al 2004 Genome-wide prediction and analysis of function-specific transcription factor binding sites In Silico Biol. 4 395-410
-
(2004)
In Silico Biol.
, vol.4
, pp. 395-410
-
-
Long, F.1
Al, E.2
-
27
-
-
0034649621
-
Rapid exchange of histone H1.1 on chromatin in living human cells
-
Lever M A, Th'ng J P H, Sun X and Hendzel M J 2000 Rapid exchange of histone H1.1 on chromatin in living human cells Nature 408 873-6
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 873-876
-
-
Lever, M.A.1
Th'Ng, J.P.H.2
Sun, X.3
Hendzel, M.J.4
-
28
-
-
0034649663
-
Dynamic binding of histone H1.1 to chromatin in living cells
-
Misteli T, Gunjan A, Hock R, Bustin M and Brown D T 2000 Dynamic binding of histone H1.1 to chromatin in living cells Nature 408 877
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 877
-
-
Misteli, T.1
Gunjan, A.2
Hock, R.3
Bustin, M.4
Brown, D.T.5
-
29
-
-
3042760021
-
Global nature of dynamic protein-chromatin interactions in vivo: Three-dimensional genome scanning and dynamic interaction networks of chromatin proteins
-
Phair R D et al 2004 Global nature of dynamic protein-chromatin interactions in vivo: three-dimensional genome scanning and dynamic interaction networks of chromatin proteins Mol. Cell. Biol. 24 6393
-
(2004)
Mol. Cell. Biol.
, vol.24
, Issue.14
, pp. 6393
-
-
Phair, R.D.1
Al, E.2
-
30
-
-
33744964248
-
Scanning chromatin: A new paradigm?
-
van Holde K and Zlatanova J 2006 Scanning chromatin: a new paradigm? J. Biol. Chem. 281 12197
-
(2006)
J. Biol. Chem.
, vol.281
, Issue.18
, pp. 12197
-
-
Van Holde, K.1
Zlatanova, J.2
-
31
-
-
1542267822
-
Molecular chaperones function as steroid receptor nuclear mobility factors
-
Elbi C, Walker D A, Romero G, Sullivan W P, Toft D O, Hager G L and DeFranco D B 2004 Molecular chaperones function as steroid receptor nuclear mobility factors PANS 101 2876
-
(2004)
PANS
, vol.101
, Issue.9
, pp. 2876
-
-
Elbi, C.1
Walker, D.A.2
Romero, G.3
Sullivan, W.P.4
Toft, D.O.5
Hager, G.L.6
Defranco, D.B.7
-
32
-
-
12144290835
-
Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes
-
Stavreva D A, Müller W G, Hager G L, Smith C L and McNally J G 2004 Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes Mol. Cell. Biol. 24 2682
-
(2004)
Mol. Cell. Biol.
, vol.24
, Issue.7
, pp. 2682
-
-
Stavreva, D.A.1
Müller, W.G.2
Hager, G.L.3
Smith, C.L.4
McNally, J.G.5
-
33
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne C S et al 2004 Active genes dynamically colocalize to shared sites of ongoing transcription Nat. Genet. 36 1065
-
(2004)
Nat. Genet.
, vol.36
, Issue.10
, pp. 1065
-
-
Osborne, C.S.1
Al, E.2
-
34
-
-
33748289518
-
Characterization of the Drosophila melanogaster genome at the nuclear lamina
-
Pickersgill H, Kalverda B, de Wit E, Talhout W, Fornerod M and van Steensel B 2006 Characterization of the Drosophila melanogaster genome at the nuclear lamina Nat. Genet. 38 1005
-
(2006)
Nat. Genet.
, vol.38
, Issue.9
, pp. 1005
-
-
Pickersgill, H.1
Kalverda, B.2
De Wit, E.3
Talhout, W.4
Fornerod, M.5
Van Steensel, B.6
-
37
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
Santos-Rosa H et al 2002 Active genes are tri-methylated at K4 of histone H3 Nature 419 407-11
-
(2002)
Nature
, vol.419
, Issue.6905
, pp. 407-411
-
-
Santos-Rosa, H.1
Al, E.2
-
38
-
-
33751528593
-
A chromatin-mediated mechanism for specification of conditional transcription factor targets
-
Buck M J and Lieb J D 2006 A chromatin-mediated mechanism for specification of conditional transcription factor targets Nat. Genet. 38 1446-51
-
(2006)
Nat. Genet.
, vol.38
, Issue.12
, pp. 1446-1451
-
-
Buck, M.J.1
Lieb, J.D.2
|