Analysis of DNA looping interactions by type II restriction enzymes that require two copies of their recognition sites

Journal of Molecular Biology

Volumn 311, Issue 3, 2001, Pages 515-527

  Milsom, Susan E ^a   Halford, Stephen E ^a   Embleton, Michelle L ^a   Szczelkun, Mark D ^a  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

Cfr10I; DNA communication; Restriction endonuclease; SfiI; Site specific recombination

Indexed keywords

RESOLVASE; RESTRICTION ENDONUCLEASE;

ANIMAL CELL; ARTICLE; DNA CLEAVAGE; DNA DETERMINATION; DNA PROTEIN COMPLEX; DNA SEQUENCE; GENETIC RECOMBINATION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; TRANSPOSON;

EID: 0035902776     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2001.4893     Document Type: Article

References (46)

1. DNA looping
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4. Topological selectivity in site-specific recombination
5. Two are better than one
6. Restriction endonuclease reactions requiring two recognition sites
7. DNA cleavage reactions by type II restriction enzymes that require two copies of their recognition sites
8. Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
9. Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates
10. Reactions of type II restriction endonucleases with 8-base pair recognition sites
11. ATP-dependent restriction enzymes
12. Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement
13. DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI
14. Cooperative binding properties of restriction endonuclease EcoRII with DNA recognition sites
15. Crystal structure of NaeI - An evolutionary bridge between DNA endonucleases and topoisomerases
16. EcoRII can be activated to cleave refractory DNA recognition sites
17. Nonidentical DNA-binding sites of endonuclease NaeI recognize different families of sequences flanking the recognition site
18. The SfiI restriction endonuclease makes a 4-strand DNA break at two copies of its recognition sequence
19. The Cfr10I restriction enzyme is functional as a tetramer
20. Structure of the tetrameric restriction endonuclease NgoMIV in complex with cleaved DNA
21. Recombination by resolvase to analyse DNA communications by the SfiI restriction endonuclease
22. DNA excision by the SfiI restriction endonuclease
23. DNA looping by the SfiI restriction endonuclease
24. Alternative geometries of DNA looping: An analysis using the SfiI endonuclease
25. Specificity from the synapsis of DNA elements by the SfiI endonuclease
26. NaeI endonuclease binding to pBR322 DNA induces looping
27. Imaging DNA loops induced by restriction endonuclease EcoRII
28. Recombination by resolvase is inhibited by lac repressor simultaneously binding operators between res sites
29. Dynamics of long range interactions on DNA: The speed of synapsis during site-specific recombination by resolvase
30. Analysis of a nucleoprotein complex: The synaptosome of γδ resolvase
31. Communications between distant sites on supercoiled DNA from non-exponential kinetics for DNA synapsis by resolvase
32. Site-specific recombination and topoisomerization by Tn21 resolvase: Role of metal ions
33. DNA supercoiling determines the activation energy barrier for site specific recombination by Tn21 resolvase
34. Random walk models for DNA synapsis by resolvase
35. Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases
36. Manganese(II) as a probe for the mechanism and specificity of restriction endonucleases
37. Reactions of BglI and other type II restriction endonucleases with discontinuous recognition sites
38. EcorRV restriction endonuclease binds all DNA sequences with equal affinity
39. 2+-ions stimulate DNA binding specificity of Cfr10I restriction enzyme
40. Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: A study using fluorescent oligonucleotides and fluorescence polarization
41. 2+ ions
42. A type II restriction endonuclease with an eight nucleotide specificity from Streptomyces fimbriatus
43. SfiI endonuclease activity is strongly influenced by the nonspecific sequence in the middle of its recognition site
44. Kinetics for the Life Sciences
45. Effect of supercoiling on the juxtaposition and relative orientation of DNA sites