메뉴 건너뛰기




Volumn 113, Issue 3, 2006, Pages 142-153

The dingo non-long terminal repeat retrotransposons from the genome of the hookworm, Ancylostoma caninum

Author keywords

Ancylostoma caninum; Dingo; EN; endonuclease; EST; expressed sequence tag; Genome; genome survey sequence; GSS; Hookworm; long terminal repeat; LTR; Mb; megabase pairs; MGE; Mobile genetic element; mobile genetic element; open reading frame; ORF; Retrotransposon; reverse transcriptase; Reverse transcriptase; RT; target site duplication; TSD; untranslated region; UTR

Indexed keywords

APURINIC ACID; PYRIMIDINE DERIVATIVE; RNA DIRECTED DNA POLYMERASE;

EID: 33744526367     PISSN: 00144894     EISSN: 10902449     Source Type: Journal    
DOI: 10.1016/j.exppara.2005.12.018     Document Type: Article
Times cited : (6)

References (49)
  • 1
    • 0034057622 scopus 로고    scopus 로고
    • Genes and genomes of Necator americanus and related hookworms
    • Blaxter M. Genes and genomes of Necator americanus and related hookworms. International Journal for Parasitology 30 (2000) 347-355
    • (2000) International Journal for Parasitology , vol.30 , pp. 347-355
    • Blaxter, M.1
  • 2
    • 0037314466 scopus 로고    scopus 로고
    • Mobile genetic elements colonizing the genomes of metazoan parasites
    • Brindley P.J., Laha T., McManus D.P., and Loukas A. Mobile genetic elements colonizing the genomes of metazoan parasites. Trends in Parasitology 19 (2003) 79-87
    • (2003) Trends in Parasitology , vol.19 , pp. 79-87
    • Brindley, P.J.1    Laha, T.2    McManus, D.P.3    Loukas, A.4
  • 3
    • 0028871801 scopus 로고
    • R4, a non-LTR retrotransposon specific to the large subunit rRNA genes of nematodes
    • Burke W.D., Muller F., and Eickbush T.H. R4, a non-LTR retrotransposon specific to the large subunit rRNA genes of nematodes. Nucleic Acids Research 23 (1995) 4628-4634
    • (1995) Nucleic Acids Research , vol.23 , pp. 4628-4634
    • Burke, W.D.1    Muller, F.2    Eickbush, T.H.3
  • 4
    • 0036795276 scopus 로고    scopus 로고
    • The dispersal of five group II introns among natural populations of Escherichia coli
    • Dai L., and Zimmerly S. The dispersal of five group II introns among natural populations of Escherichia coli. RNA 8 (2002) 1294-1307
    • (2002) RNA , vol.8 , pp. 1294-1307
    • Dai, L.1    Zimmerly, S.2
  • 5
    • 0033952127 scopus 로고    scopus 로고
    • A survey of genes expressed in adults of the human hookworm, Necator americanus
    • Daub J., Loukas A., Pritchard D.I., and Blaxter M. A survey of genes expressed in adults of the human hookworm, Necator americanus. Parasitology 120 Pt 2 (2000) 171-184
    • (2000) Parasitology , vol.120 , Issue.PART 2 , pp. 171-184
    • Daub, J.1    Loukas, A.2    Pritchard, D.I.3    Blaxter, M.4
  • 7
    • 0029066635 scopus 로고
    • Female-specific sequences isolated from Schistosoma mansoni by representational difference analysis
    • Drew A.C., and Brindley P.J. Female-specific sequences isolated from Schistosoma mansoni by representational difference analysis. Molecular and Biochemical Parasitology 71 (1995) 173-181
    • (1995) Molecular and Biochemical Parasitology , vol.71 , pp. 173-181
    • Drew, A.C.1    Brindley, P.J.2
  • 8
    • 0032819618 scopus 로고    scopus 로고
    • SR2 elements, non-long terminal repeat retrotransposons of the RTE-1 lineage from the human blood fluke Schistosoma mansoni
    • Drew A.C., Minchella D.J., King L.T., Rollinson D., and Brindley P.J. SR2 elements, non-long terminal repeat retrotransposons of the RTE-1 lineage from the human blood fluke Schistosoma mansoni. Molecular Biology and Evolution 16 (1999) 1256-1269
    • (1999) Molecular Biology and Evolution , vol.16 , pp. 1256-1269
    • Drew, A.C.1    Minchella, D.J.2    King, L.T.3    Rollinson, D.4    Brindley, P.J.5
  • 9
    • 0026862794 scopus 로고
    • Transposing without ends: the non-LTR retrotransposable elements
    • Eickbush T.H. Transposing without ends: the non-LTR retrotransposable elements. New Biologist 4 (1992) 430-440
    • (1992) New Biologist , vol.4 , pp. 430-440
    • Eickbush, T.H.1
  • 11
    • 0028102792 scopus 로고
    • Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides
    • Felder H., Herzceg A., de Chastonay Y., Aeby P., Tobler H., and Muller F. Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides. Gene 149 (1994) 219-225
    • (1994) Gene , vol.149 , pp. 219-225
    • Felder, H.1    Herzceg, A.2    de Chastonay, Y.3    Aeby, P.4    Tobler, H.5    Muller, F.6
  • 12
    • 33744543141 scopus 로고    scopus 로고
    • Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
  • 13
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng Q., Moran J.V., Kazazian Jr. H.H., and Boeke J.D. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition. Cell 87 (1996) 905-916
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian Jr., H.H.3    Boeke, J.D.4
  • 15
    • 3042790014 scopus 로고    scopus 로고
    • Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis
    • Fischer C., Bouneau L., Coutanceau J.P., Weissenbach J., Volff J.N., and Ozouf-Costaz C. Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis. Gene 336 (2004) 175-183
    • (2004) Gene , vol.336 , pp. 175-183
    • Fischer, C.1    Bouneau, L.2    Coutanceau, J.P.3    Weissenbach, J.4    Volff, J.N.5    Ozouf-Costaz, C.6
  • 17
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41 (1999) 95-98
    • (1999) Nucleic Acids Symposium Series , vol.41 , pp. 95-98
    • Hall, T.1
  • 18
    • 2442671716 scopus 로고    scopus 로고
    • A highly active synthetic mammalian retrotransposon
    • Han J.S., and Boeke J.D. A highly active synthetic mammalian retrotransposon. Nature 429 (2004) 314-318
    • (2004) Nature , vol.429 , pp. 314-318
    • Han, J.S.1    Boeke, J.D.2
  • 19
    • 0030567997 scopus 로고    scopus 로고
    • Acasp, a gene encoding a cathepsin D-like aspartic protease from the hookworm Ancylostoma caninum
    • Harrop S.A., Prociv P., and Brindley P.J. Acasp, a gene encoding a cathepsin D-like aspartic protease from the hookworm Ancylostoma caninum. Biochemical and Biophysical Research Communications 227 (1996) 294-302
    • (1996) Biochemical and Biophysical Research Communications , vol.227 , pp. 294-302
    • Harrop, S.A.1    Prociv, P.2    Brindley, P.J.3
  • 20
    • 0032607420 scopus 로고    scopus 로고
    • Genetic applications of transposons and other repetitive elements in zebrafish
    • Ivics Z., Izsvak Z., and Hackett P.B. Genetic applications of transposons and other repetitive elements in zebrafish. Methods in Cell Biology 60 (1999) 99-131
    • (1999) Methods in Cell Biology , vol.60 , pp. 99-131
    • Ivics, Z.1    Izsvak, Z.2    Hackett, P.B.3
  • 22
    • 22744445703 scopus 로고    scopus 로고
    • RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons
    • Kapitonov V.V., and Jurka J. RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons. PLoS Biology 6 (2005) e181
    • (2005) PLoS Biology , vol.6
    • Kapitonov, V.V.1    Jurka, J.2
  • 23
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: drivers of genome evolution
    • Kazazian Jr. H.H. Mobile elements: drivers of genome evolution. Science 303 (2004) 1626-1632
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian Jr., H.H.1
  • 24
    • 0036020261 scopus 로고    scopus 로고
    • Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum
    • Laha T., Brindley P.J., Smout M.J., Verity C.K., McManus D.P., and Loukas A. Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum. International Journal for Parasitology 32 (2002) 1163-1174
    • (2002) International Journal for Parasitology , vol.32 , pp. 1163-1174
    • Laha, T.1    Brindley, P.J.2    Smout, M.J.3    Verity, C.K.4    McManus, D.P.5    Loukas, A.6
  • 25
    • 27844455605 scopus 로고    scopus 로고
    • Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni
    • Laha T., Kewgrai N., Loukas A., and Brindley P.J. Characterization of SR3 reveals abundance of non-LTR retrotransposons of the RTE clade in the genome of the human blood fluke, Schistosoma mansoni. BMC Genomics. 6 (2005) 154
    • (2005) BMC Genomics. , vol.6 , pp. 154
    • Laha, T.1    Kewgrai, N.2    Loukas, A.3    Brindley, P.J.4
  • 26
    • 7944222696 scopus 로고    scopus 로고
    • The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni
    • (Corrigendum, 2005. International Journal for Parasitolology 35, 461)
    • Laha T., Loukas A., Smyth D.J., Copeland C.S., and Brindley P.J. The fugitive LTR retrotransposon from the genome of the human blood fluke, Schistosoma mansoni. International Journal for Parasitology 34 (2004) 1365-1375 (Corrigendum, 2005. International Journal for Parasitolology 35, 461)
    • (2004) International Journal for Parasitology , vol.34 , pp. 1365-1375
    • Laha, T.1    Loukas, A.2    Smyth, D.J.3    Copeland, C.S.4    Brindley, P.J.5
  • 27
    • 0035819563 scopus 로고    scopus 로고
    • Gulliver, a long terminal repeat retrotransposon from the genome of the oriental blood fluke Schistosoma japonicum
    • Laha T., Loukas A., Verity C.K., McManus D.P., and Brindley P.J. Gulliver, a long terminal repeat retrotransposon from the genome of the oriental blood fluke Schistosoma japonicum. Gene 264 (2001) 59-68
    • (2001) Gene , vol.264 , pp. 59-68
    • Laha, T.1    Loukas, A.2    Verity, C.K.3    McManus, D.P.4    Brindley, P.J.5
  • 28
    • 0014736555 scopus 로고
    • Influence of fertilization on ovogenesis in Ancylostoma caninum
    • LeJambre L.F., and Georgi J.R. Influence of fertilization on ovogenesis in Ancylostoma caninum. Journal of Parasitology 56 (1970) 131-137
    • (1970) Journal of Parasitology , vol.56 , pp. 131-137
    • LeJambre, L.F.1    Georgi, J.R.2
  • 31
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
    • Luan D.D., Korman M.H., Jakubczak J.L., and Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72 (1993) 595-605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 33
    • 0031857142 scopus 로고    scopus 로고
    • The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs
    • Malik H.S., and Eickbush T.H. The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEs. Molecular Biology and Evolution 15 (1998) 1123-1134
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 1123-1134
    • Malik, H.S.1    Eickbush, T.H.2
  • 34
    • 0033966338 scopus 로고    scopus 로고
    • NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans
    • Malik H.S., and Eickbush T.H. NeSL-1, an ancient lineage of site-specific non-LTR retrotransposons from Caenorhabditis elegans. Genetics 154 (2000) 193-203
    • (2000) Genetics , vol.154 , pp. 193-203
    • Malik, H.S.1    Eickbush, T.H.2
  • 35
    • 31544475124 scopus 로고    scopus 로고
    • Minos as a genetic and genomic tool in Drosophila melanogaster
    • Metaxakis A., Oehler S., Klinakis A., and Savakis C. Minos as a genetic and genomic tool in Drosophila melanogaster. Genetics 171 (2005) 571-581
    • (2005) Genetics , vol.171 , pp. 571-581
    • Metaxakis, A.1    Oehler, S.2    Klinakis, A.3    Savakis, C.4
  • 37
    • 4143121384 scopus 로고    scopus 로고
    • Genomic organization of the Schistosoma mansoni aspartic protease gene, a platyhelminth orthologue of mammalian lysosomal cathepsin D
    • Morales M.E., Kalinna B.H., Heyers O., Schulmeister A., Mann V.H., Copeland C.S., Loukas A., and Brindley P.J. Genomic organization of the Schistosoma mansoni aspartic protease gene, a platyhelminth orthologue of mammalian lysosomal cathepsin D. Gene 338 (2004) 99-109
    • (2004) Gene , vol.338 , pp. 99-109
    • Morales, M.E.1    Kalinna, B.H.2    Heyers, O.3    Schulmeister, A.4    Mann, V.H.5    Copeland, C.S.6    Loukas, A.7    Brindley, P.J.8
  • 38
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: an application to display phylogenetic trees on personal computers
    • Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12 (1996) 357-358
    • (1996) Computer Applications in the Biosciences , vol.12 , pp. 357-358
    • Page, R.D.1
  • 40
    • 0033179759 scopus 로고    scopus 로고
    • Resident aliens: the Tc1/mariner superfamily of transposable elements
    • Plasterk R.H., Izsvak Z., and Ivics Z. Resident aliens: the Tc1/mariner superfamily of transposable elements. Trends in Genetics 15 (1999) 326-332
    • (1999) Trends in Genetics , vol.15 , pp. 326-332
    • Plasterk, R.H.1    Izsvak, Z.2    Ivics, Z.3
  • 41
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4 (1987) 406-425
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 42
    • 0016700864 scopus 로고
    • Detection of specific sequences among DNA fragments separated by gel electrophoresis
    • Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis. Journal of Molecular Biology 98 (1975) 503-517
    • (1975) Journal of Molecular Biology , vol.98 , pp. 503-517
    • Southern, E.M.1
  • 44
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 0030966415 scopus 로고    scopus 로고
    • mle-1, a mariner-like transposable element in the nematode Trichostrongylus colubriformis
    • Wiley L.J., Riley L.G., Sangster N.C., and Weiss A.S. mle-1, a mariner-like transposable element in the nematode Trichostrongylus colubriformis. Gene 188 (1997) 235-237
    • (1997) Gene , vol.188 , pp. 235-237
    • Wiley, L.J.1    Riley, L.G.2    Sangster, N.C.3    Weiss, A.S.4
  • 49
    • 0030052098 scopus 로고    scopus 로고
    • Rte-1, a retrotransposon-like element in Caenorhabditis elegans
    • Youngman S., van Luenen H.G., and Plasterk R.H. Rte-1, a retrotransposon-like element in Caenorhabditis elegans. FEBS Letters 380 (1996) 1-7
    • (1996) FEBS Letters , vol.380 , pp. 1-7
    • Youngman, S.1    van Luenen, H.G.2    Plasterk, R.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.