-
1
-
-
0033637153
-
Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, and Brown PO (2000) Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes. Mol. Biol. Cell 11: 4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
2
-
-
0035852785
-
Dynamic modeling of gene expression data
-
Holter N, Maritan A, Cieplak M, Fedoroff N, and Banavar J (2001) Dynamic modeling of gene expression data. PNAS, USA 98: 1693-1698.
-
(2001)
PNAS, USA
, vol.98
, pp. 1693-1698
-
-
Holter, N.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.4
Banavar, J.5
-
3
-
-
0037047161
-
Cluster analysis of gene expression dynamics
-
Ramoni M, Sebastiani P, and Kohane I (2002) Cluster analysis of gene expression dynamics. PNAS, 99, 9121-9126.
-
(2002)
PNAS
, vol.99
, pp. 9121-9126
-
-
Ramoni, M.1
Sebastiani, P.2
Kohane, I.3
-
4
-
-
0034800371
-
Principal component analysis for clustering gene expression data
-
Yeung KY and Ruzzo WL (2001) Principal component analysis for clustering gene expression data. Bioinformatics, 17, 763-774.
-
(2001)
Bioinformatics
, vol.17
, pp. 763-774
-
-
Yeung, K.Y.1
Ruzzo, W.L.2
-
5
-
-
0037667290
-
Clustering gene-expression data with repeated measurements
-
Yeung KY, Medvedovic M, and Bumgarner RE (2003) Clustering gene-expression data with repeated measurements. Genome Biology, 4, R34.1-R34.17.
-
(2003)
Genome Biology
, vol.4
-
-
Yeung, K.Y.1
Medvedovic, M.2
Bumgarner, R.E.3
-
6
-
-
0034568109
-
-
Hastiel T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, and Brown PO (2000) Gene shaving as a method for identifying distinct sets of genes with similar expression patterns. Genome Biology 1(2): Research0003.1-0003.21.
-
Hastiel T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, and Brown PO (2000) Gene shaving as a method for identifying distinct sets of genes with similar expression patterns. Genome Biology 1(2): Research0003.1-0003.21.
-
-
-
-
7
-
-
0037447386
-
Pattern recognition in gene expression profiling using DNA array: A comparative study of different statistical methods applied to cancer classification
-
Romualdi C, Campanaro S, Campagna D, Celegato B, Cannata N, Toppo S, Valle G, Lanfranchi G (2003) Pattern recognition in gene expression profiling using DNA array: A comparative study of different statistical methods applied to cancer classification. Human Molecular Genetics, Vol. 12, No. 8 pp. 823-836.
-
(2003)
Human Molecular Genetics
, vol.12
, Issue.8
, pp. 823-836
-
-
Romualdi, C.1
Campanaro, S.2
Campagna, D.3
Celegato, B.4
Cannata, N.5
Toppo, S.6
Valle, G.7
Lanfranchi, G.8
-
8
-
-
0034682504
-
Fundamental patterns underlying gene expression profiles: Simplicity from complexicity
-
Neal SH, Madhusmita M, Holter NS, Mitra M, Maritan A, Cieplak M, Banavar JR, and Fedoroff, VF (2000) Fundamental patterns underlying gene expression profiles: Simplicity from complexicity. PNAS, 97:8409-8414.
-
(2000)
PNAS
, vol.97
, pp. 8409-8414
-
-
Neal, S.H.1
Madhusmita, M.2
Holter, N.S.3
Mitra, M.4
Maritan, A.5
Cieplak, M.6
Banavar, J.R.7
Fedoroff, V.F.8
-
9
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using supported vector machines
-
Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Junior MA, and Haussler D (2000) Knowledge-based analysis of microarray gene expression data by using supported vector machines. PNAS. USA vol. 97(1): 262-267.
-
(2000)
PNAS. USA
, vol.97
, Issue.1
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Junior, M.A.7
Haussler, D.8
-
11
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Herrero J, Valencia A, and Dopazo J (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17:126-136.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
14
-
-
0004063090
-
-
Prentice Hall Upper Saddle River, New Jersey
-
Haykin S (1999) Neural Networks. Prentice Hall Upper Saddle River, New Jersey.
-
(1999)
Neural Networks
-
-
Haykin, S.1
-
15
-
-
0029375851
-
Gradient calculation for dynamic recurrent neural networks
-
Pearlmutter BA (1995) Gradient calculation for dynamic recurrent neural networks. IEEE Transactions on Neural Networks 6(5):1212-1228.
-
(1995)
IEEE Transactions on Neural Networks
, vol.6
, Issue.5
, pp. 1212-1228
-
-
Pearlmutter, B.A.1
-
17
-
-
35048846178
-
Backpropagation Through Time: What it does and how to do it
-
San Francisco, CA
-
Werbos PJ (1993) Backpropagation Through Time: What it does and how to do it. Proc. of the ICNN, San Francisco, CA.
-
(1993)
Proc. of the ICNN
-
-
Werbos, P.J.1
-
18
-
-
0032561246
-
The Transcriptional Program of Sporulation in Budding Yeast
-
Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, and Brown PO (1998) The Transcriptional Program of Sporulation in Budding Yeast. Science 282, 699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
-
19
-
-
0032441150
-
-
Eisen MB, Spellman PT, Brown PO, and Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. PNAS, 95, Issue 25, 14863-14868.
-
Eisen MB, Spellman PT, Brown PO, and Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. PNAS, Vol. 95, Issue 25, 14863-14868.
-
-
-
-
20
-
-
0031742022
-
Comprehensive identification of cell cycle regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman PT, Sherlock G, Zhang MW, Iyer VR, Anders K, Eisen MB, Brown PO, and Futcher B (1998) Comprehensive identification of cell cycle regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9: 3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.W.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Futcher, B.8
-
21
-
-
0034653294
-
Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins
-
Jansen R and Gerstein M (2000) Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins. Nucleic Acids Research, Vol. 28, No. 6 1481-1488.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.6
, pp. 1481-1488
-
-
Jansen, R.1
Gerstein, M.2
-
22
-
-
0032075070
-
A dynamical system perspective of structural learning with forgetting
-
Miller DA and Zurada JM (1998) A dynamical system perspective of structural learning with forgetting. IEEE Transactions on Neural Networks, 9(3): 508-515.
-
(1998)
IEEE Transactions on Neural Networks
, vol.9
, Issue.3
, pp. 508-515
-
-
Miller, D.A.1
Zurada, J.M.2
-
23
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H (1974) A new look at the statistical model identification. IEEE Transactions on Automatic Control 19:716-723.
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
24
-
-
0000629975
-
Cross-validatory choice and assessment of statistical predictions (with discussion)
-
Stone M (1974) Cross-validatory choice and assessment of statistical predictions (with discussion). Journal of the Royal Statistical Society, Series B, 36, 111-147.
-
(1974)
Journal of the Royal Statistical Society, Series B
, vol.36
, pp. 111-147
-
-
Stone, M.1
-
25
-
-
0003199213
-
Assessing risk factors of human complex diseases by Akaike and Bayesian information criteria (abstract)
-
Li W, Sherriff A, and Liu X (2000) Assessing risk factors of human complex diseases by Akaike and Bayesian information criteria (abstract). Am J Hum Genet 67(Suppl): S222.
-
(2000)
Am J Hum Genet
, vol.67
, Issue.SUPPL.
-
-
Li, W.1
Sherriff, A.2
Liu, X.3
-
26
-
-
0033569406
-
Molecular classification of cancer: Class Discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim, DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh, ML, Downing JR, Caliguiri MA, Bloomfield CD, and Lander ES (1999) Molecular classification of cancer: Class Discovery and class prediction by gene expression monitoring. Science, 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caliguiri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
27
-
-
0034730140
-
Singular value decomposition for genome-wide expression data processing and modeling
-
Alter O, Brown PO, and Botstein D (2000) Singular value decomposition for genome-wide expression data processing and modeling. PNAS, 97, 10101-10106.
-
(2000)
PNAS
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
Brown, P.O.2
Botstein, D.3
-
28
-
-
0031637395
-
Qualitative analysis of gene networks
-
Thieffry D and Thomas R (1998) Qualitative analysis of gene networks. Pacific Symp. Biocomp, 3:77-88.
-
(1998)
Pacific Symp. Biocomp
, vol.3
, pp. 77-88
-
-
Thieffry, D.1
Thomas, R.2
-
29
-
-
14644409581
-
Time series analysis of yeast S. cerevisiae cell cycle expression data
-
Bronberg-Bauer E, De Beucklaer A, Kummer U, and Rost U eds, Heidelberg
-
Socci ND and Mitra P (1999) Time series analysis of yeast S. cerevisiae cell cycle expression data. In Bronberg-Bauer E, De Beucklaer A, Kummer U, and Rost U (eds) Proceedings of Workshop on computation of Biochemical Pathways and Genetic Networks, Heidelberg.
-
(1999)
Proceedings of Workshop on computation of Biochemical Pathways and Genetic Networks
-
-
Socci, N.D.1
Mitra, P.2
-
30
-
-
0003253640
-
Unsupervised neural network for discovery of gene expression patterns in B-cell lymphoma
-
Azuaje F (2001) Unsupervised neural network for discovery of gene expression patterns in B-cell lymphoma. Online Journal of Bioinformatics, Vol 1: 26-41.
-
(2001)
Online Journal of Bioinformatics
, vol.1
, pp. 26-41
-
-
Azuaje, F.1
-
32
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan J, Wei JS, Ringner M, Saal LH, Ladanyi M, Westermann F, Berthold F, Schwab M, Antonescu CR, Peterson C, and Meltzer PS (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nature Med. Vol.7, No. 6. 673-679.
-
(2001)
Nature Med
, vol.7
, Issue.6
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
33
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, and Speed T (2002) Comparison of discrimination methods for the classification of tumors using gene expression data. JASA, 97 (457):77-87.
-
(2002)
JASA
, vol.97
, Issue.457
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.3
|