-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
2
-
-
0034255435
-
Cancer classification with DNA microarray
-
Wooster, R. (2000) Cancer classification with DNA microarray. Trends Genet., 16, 327-329.
-
(2000)
Trends Genet.
, vol.16
, pp. 327-329
-
-
Wooster, R.1
-
3
-
-
0034954414
-
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
-
Khan, J., Wei, J.S., Ringner, M., Saal, L.H., Ladanyi, M., Westermann, F., Berthold, F., Schwab, M., Antonescu, C.R., Peterson, C. and Meltzer, P.S. (2001) Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks. Nat. Med., 7, 673-679.
-
(2001)
Nat. Med.
, vol.7
, pp. 673-679
-
-
Khan, J.1
Wei, J.S.2
Ringner, M.3
Saal, L.H.4
Ladanyi, M.5
Westermann, F.6
Berthold, F.7
Schwab, M.8
Antonescu, C.R.9
Peterson, C.10
Meltzer, P.S.11
-
4
-
-
0034088857
-
A gene expression database for the molecular pharmacology of cancer
-
Scherf, U., Ross, D.T., Waltham, M., Smith, L.H., Lee, J.K., Tanabe, L., Kohn, K.W., Reinhold, W.C., Myers, T.G., Andrews, D.T. et al. (2000) A gene expression database for the molecular pharmacology of cancer. Nat. Genet., 24, 236-244.
-
(2000)
Nat. Genet.
, vol.24
, pp. 236-244
-
-
Scherf, U.1
Ross, D.T.2
Waltham, M.3
Smith, L.H.4
Lee, J.K.5
Tanabe, L.6
Kohn, K.W.7
Reinhold, W.C.8
Myers, T.G.9
Andrews, D.T.10
-
5
-
-
0034050902
-
Systematic variation in gene expression patterns in human cancer cell lines
-
Ross, D.T., Scherf, U., Eisen, M.B., Perou, C.M., Rees, C., Spellman, P., Iyer, V., Jeffrey, S.S., Van de Rijn, M., Waltham, M., et al. (2000) Systematic variation in gene expression patterns in human cancer cell lines. Nat. Genet., 24, 227-235.
-
(2000)
Nat. Genet.
, vol.24
, pp. 227-235
-
-
Ross, D.T.1
Scherf, U.2
Eisen, M.B.3
Perou, C.M.4
Rees, C.5
Spellman, P.6
Iyer, V.7
Jeffrey, S.S.8
Van de Rijn, M.9
Waltham, M.10
-
6
-
-
18244409933
-
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning
-
Shipp, M.A., Ross, K.N., Tamayo, P., Weng, A.P., Kutok, J.L., Aguiar, R.C., Gaasenbeek, M., Angelo, M., Reich, M., Pinkus, G.S. et al. (2002) Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat. Med., 8, 68-74.
-
(2002)
Nat. Med.
, vol.8
, pp. 68-74
-
-
Shipp, M.A.1
Ross, K.N.2
Tamayo, P.3
Weng, A.P.4
Kutok, J.L.5
Aguiar, R.C.6
Gaasenbeek, M.7
Angelo, M.8
Reich, M.9
Pinkus, G.S.10
-
7
-
-
0034614637
-
The hallmark of cancer
-
Hanahan, D. and Weinberg, R. (2000) The hallmark of cancer. Cell, 100, 57-71.
-
(2000)
Cell
, vol.100
, pp. 57-71
-
-
Hanahan, D.1
Weinberg, R.2
-
8
-
-
0032441150
-
Cluster analysis and display of genome-wide expression pattern
-
Eisen, M.B., Spellman, P.T., Brown, P.O. and Botstein, D. (1998) Cluster analysis and display of genome-wide expression pattern. Proc. Natl Acad. Sci. USA, 95, 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
9
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps, methods and application to hematopoietic differentiation
-
Tamayo, P., Slonim, D., Mesirov, J., Zhu, Q., Kitareewan, S., Dmitrovsky, E., Lander, E.S. and Golub, T.R. (1999) Interpreting patterns of gene expression with self-organizing maps, methods and application to hematopoietic differentiation. Proc. Natl Acad. Sci. USA, 96, 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
10
-
-
0033692876
-
Tissue classification with gene expression profiles
-
Ben-Dor, A., Bruhn, L., Friedman, N., Nachman, I., Schummer, M. and Yakhini, Z. (2000) Tissue classification with gene expression profiles. J. Comput. Biol., 7, 559-583.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 559-583
-
-
Ben-Dor, A.1
Bruhn, L.2
Friedman, N.3
Nachman, I.4
Schummer, M.5
Yakhini, Z.6
-
11
-
-
0035810997
-
Recursive partitioning for tumor classification with gene expression microarray data
-
Zhang, H., Yu, C.Y., Singer, B. and Xiong, M. (2001) Recursive partitioning for tumor classification with gene expression microarray data. Proc. Natl Acad. Sci. USA, 98, 6730-6735.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 6730-6735
-
-
Zhang, H.1
Yu, C.Y.2
Singer, B.3
Xiong, M.4
-
12
-
-
0034533063
-
Computational methods for gene expression-based tumor classification
-
Xiong, M., Jin, L., Li, W. and Boerwinkle, E. (2000) Computational methods for gene expression-based tumor classification. Biotechniques, 29, 1264-1268.
-
(2000)
Biotechniques
, vol.29
, pp. 1264-1268
-
-
Xiong, M.1
Jin, L.2
Li, W.3
Boerwinkle, E.4
-
13
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown, M.P., Grundy, W.N., Lin, D., Cristianini, N., Sugnet, C.W., Furey, T.S., Ares, M., Jr and Haussler, D. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl Acad. Sci. USA, 97, 262-267.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares M., Jr.7
Haussler, D.8
-
14
-
-
0033636139
-
Support vector machine and validation of cancer tissue using microarray expression data
-
Furey, T.S., Cristianini, N., Duffy, N., Bednarski, D.W., Shummer, M. and Haussler, D. (2000) Support vector machine and validation of cancer tissue using microarray expression data. Bioinformatics, 16, 906-914.
-
(2000)
Bioinformatics
, vol.16
, pp. 906-914
-
-
Furey, T.S.1
Cristianini, N.2
Duffy, N.3
Bednarski, D.W.4
Shummer, M.5
Haussler, D.6
-
15
-
-
0004027527
-
Discriminant Analysis and Statistical Pattern Recognition
-
Wiley, New York
-
McLachlan, G.J. (1992) Discriminant Analysis and Statistical Pattern Recognition. Wiley, New York.
-
(1992)
-
-
McLachlan, G.J.1
-
16
-
-
0034894874
-
Feature (gene) selection in gene expression-based tumor classification
-
Xiong, M., Li, W., Zhao, J., Jin, L. and Boerwinkle, E. (2001) Feature (gene) selection in gene expression-based tumor classification. Mol. Genet. Metab., 73, 239-247.
-
(2001)
Mol. Genet. Metab.
, vol.73
, pp. 239-247
-
-
Xiong, M.1
Li, W.2
Zhao, J.3
Jin, L.4
Boerwinkle, E.5
-
17
-
-
0036139278
-
Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
-
Li, L., Weinberg, C.R., Darden, T.A. and Pedersen, L.G. (2001) Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. Bioinformatics, 17, 1131-1142.
-
(2001)
Bioinformatics
, vol.17
, pp. 1131-1142
-
-
Li, L.1
Weinberg, C.R.2
Darden, T.A.3
Pedersen, L.G.4
-
18
-
-
0036372382
-
Permutation-validated principal components analysis of microarray data
-
research0019.1-0019.11
-
Landgrebe, J., Wurst, W. and Welzl, G. (2002) Permutation-validated principal components analysis of microarray data. Genome Biol., 3, research0019.1-0019.11.
-
(2002)
Genome Biol.
, vol.3
-
-
Landgrebe, J.1
Wurst, W.2
Welzl, G.3
-
19
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani, R., Hastie, T., Narasimhan, B. and Chu, G. (2002) Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc. Natl Acad. Sci. USA, 99, 6567-6572.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
20
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumours by using gene expression data
-
Dudoit, S., Fridlyand, J. and Speed, T. (2000) Comparison of discrimination methods for the classification of tumours by using gene expression data. J Am. Stat. Assoc., 97(457), 77-87.
-
(2000)
J. Am. Stat. Assoc.
, vol.97
, Issue.457
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.3
-
21
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallom M.V., Chee, M.S., Mittmann, M., Wang, C., Kobayashi, M., Horton, H. and Brown, E.L. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol., 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallom, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
22
-
-
0035914122
-
The main biological determinants of tumor line taxonomy elucidated by a principal component analysis of microarray data
-
Crescenzi, M. and Giuliani, A. (2001) The main biological determinants of tumor line taxonomy elucidated by a principal component analysis of microarray data. FEBS Lett., 507, 114-118.
-
(2001)
FEBS Lett.
, vol.507
, pp. 114-118
-
-
Crescenzi, M.1
Giuliani, A.2
-
23
-
-
0028292481
-
Quantitative modeling and biology, the multivariate approach
-
Benigni, R. and Giuliani, A. (1994) Quantitative modeling and biology, the multivariate approach. Am. J. Physiol., 266, 1697-1704.
-
(1994)
Am. J. Physiol.
, vol.266
, pp. 1697-1704
-
-
Benigni, R.1
Giuliani, A.2
-
24
-
-
0033657261
-
Principal component analysis to summarize microarray experiment, application to sporulation time series
-
2000
-
Raychaudhuri, S., Stuart, J.M. and Altman, R.B. (2000) Principal component analysis to summarize microarray experiment, application to sporulation time series. Pac. Symp. Biocomput., 2000, 455-466.
-
(2000)
Pac. Symp. Biocomput.
, pp. 455-466
-
-
Raychaudhuri, S.1
Stuart, J.M.2
Altman, R.B.3
-
25
-
-
0036166439
-
Tumor classification by partial least squares using microarray gene expression data
-
Nguyen, D.V and Rocke, D.M. (2002) Tumor classification by partial least squares using microarray gene expression data. Bioinformatics, 18, 39-50.
-
(2002)
Bioinformatics
, vol.18
, pp. 39-50
-
-
Nguyen, D.V.1
Rocke, D.M.2
-
26
-
-
0035923521
-
Classification of human lung carcinoma by mRNA expression profiling reveals distinct adenocarcinoma subclasses
-
Bhattacharjee, A., Richards, W.G., Staunton, J., Li, C., Monti, S., Vasa, P., Ladd, C., Behesti, J., Bueno, R., Gillette, M. et al. (2001) Classification of human lung carcinoma by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl Acad. Sci. USA, 98, 13790-13795.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 13790-13795
-
-
Bhattacharjee, A.1
Richards, W.G.2
Staunton, J.3
Li, C.4
Monti, S.5
Vasa, P.6
Ladd, C.7
Behesti, J.8
Bueno, R.9
Gillette, M.10
-
27
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West, M., Blanchette, C., Dressman, H., Huang, E., Ishida, S., Spang, R., Zuzan, H., Olson, J.A., Marks, J.R. and Nevins, J.R. (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc. Natl Acad. Sci. USA, 98, 11462-11467.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
Spang, R.6
Zuzan, H.7
Olson, J.A.8
Marks, J.R.9
Nevins, J.R.10
-
28
-
-
0000060617
-
Molecular classification of multiple tumor types
-
Yeang, C.H., Ramaswamy, S., Tamayo, P., Mukherjee, S., Rifkin, R.M., Angelo, M., Reich, M. and Lander, E. (2001) Molecular classification of multiple tumor types. Bioinformatics, 17, 316-322.
-
(2001)
Bioinformatics
, vol.17
, pp. 316-322
-
-
Yeang, C.H.1
Ramaswamy, S.2
Tamayo, P.3
Mukherjee, S.4
Rifkin, R.M.5
Angelo, M.6
Reich, M.7
Lander, E.8
-
30
-
-
0031443035
-
Proteases and their inhibitors in human brain tumours, a review
-
Rooprai, H.K. and McCormick, D. (1997) Proteases and their inhibitors in human brain tumours, a review. Anticancer Res., 17, 4151-4162.
-
(1997)
Anticancer Res.
, vol.17
, pp. 4151-4162
-
-
Rooprai, H.K.1
McCormick, D.2
-
31
-
-
0034954054
-
Fibronectin activates matrix metalloproteinase-9 secretion via the MEK1-MAPK and the PI3K-Akt pathways in ovarian cancer cells
-
Thant, A.A., Nawa, A., Kikkawa, F., Ichigotani, Y., Zhang, Y., Sein, T.T., Amin, A.R. and Hamaguchi, M. (2000) Fibronectin activates matrix metalloproteinase-9 secretion via the MEK1-MAPK and the PI3K-Akt pathways in ovarian cancer cells. Clin. Exp. Metastasis, 18, 423-428.
-
(2000)
Clin. Exp. Metastasis
, vol.18
, pp. 423-428
-
-
Thant, A.A.1
Nawa, A.2
Kikkawa, F.3
Ichigotani, Y.4
Zhang, Y.5
Sein, T.T.6
Amin, A.R.7
Hamaguchi, M.8
-
32
-
-
0032818581
-
Osteonectin/SPARC is overexpressed in human hepatocellular carcinoma
-
Le Bail, B., Faouzi, S., Boussarie, L., Guirouilh, J., Blanc, J.F., Carles, J., Bioulac-Sage, P., Balabaud, C. and Rosenbaum, J. (1999) Osteonectin/SPARC is overexpressed in human hepatocellular carcinoma. J. Pathol., 189, 46-52.
-
(1999)
J. Pathol.
, vol.189
, pp. 46-52
-
-
Le Bail, B.1
Faouzi, S.2
Boussarie, L.3
Guirouilh, J.4
Blanc, J.F.5
Carles, J.6
Bioulac-Sage, P.7
Balabaud, C.8
Rosenbaum, J.9
-
33
-
-
0031045940
-
Expression of bone matrix proteins in human breast cancer, potential roles in microcalcification formation and in the genesis of bone metastases
-
Bellahcene, A. and Castronovo, V (1997) Expression of bone matrix proteins in human breast cancer, potential roles in microcalcification formation and in the genesis of bone metastases. Bull. Cancer, 84, 17-24.
-
(1997)
Bull. Cancer
, vol.84
, pp. 17-24
-
-
Bellahcene, A.1
Castronovo, V.2
-
34
-
-
0035801472
-
Mutation in Brca2 stimulates error-prone homology-directed repair of DNA double-strand breaks occurring between repeated sequences
-
Tutt, A., Bertwistle, D., Valentine, J., Gabriel, A., Swift, S., Ross, G., Griffin, C., Thacker, J. and Ashworth, A. (2001) Mutation in Brca2 stimulates error-prone homology-directed repair of DNA double-strand breaks occurring between repeated sequences. EMBO J., 20, 4704-4716.
-
(2001)
EMBO J.
, vol.20
, pp. 4704-4716
-
-
Tutt, A.1
Bertwistle, D.2
Valentine, J.3
Gabriel, A.4
Swift, S.5
Ross, G.6
Griffin, C.7
Thacker, J.8
Ashworth, A.9
-
35
-
-
0034846944
-
Low titre autoantibodies against recoverin in sera of patients with small cell lung cancer but without a loss of vision
-
Bazhin, A.V., Shifrina, O.N., Savchenko, M.S., Tikhomirova, N.K., Goncharskaia, M.A., Gorbunova, V.A., Senin, I.I., Chuchalin, A.G. and Philippov, P.P. (2001) Low titre autoantibodies against recoverin in sera of patients with small cell lung cancer but without a loss of vision. Lung Cancer, 34, 99-104.
-
(2001)
Lung Cancer
, vol.34
, pp. 99-104
-
-
Bazhin, A.V.1
Shifrina, O.N.2
Savchenko, M.S.3
Tikhomirova, N.K.4
Goncharskaia, M.A.5
Gorbunova, V.A.6
Senin, I.I.7
Chuchalin, A.G.8
Philippov, P.P.9
-
36
-
-
0033859441
-
Simultaneous enzyme overlay membrane (EOM)-based in situ zymography and immunofluorescence technique reveals cathepsin B-like activity in a subset of tumour vessels
-
Berndt, A., Johannesson, J., Haas, M., Arkona, C., Katenkamp, D., Wiederanders, B., Hyckel, P. and Kosmehl, H. (2000) Simultaneous enzyme overlay membrane (EOM)-based in situ zymography and immunofluorescence technique reveals cathepsin B-like activity in a subset of tumour vessels. Histochem. Cell. Biol., 114, 63-68.
-
(2000)
Histochem. Cell. Biol.
, vol.114
, pp. 63-68
-
-
Berndt, A.1
Johannesson, J.2
Haas, M.3
Arkona, C.4
Katenkamp, D.5
Wiederanders, B.6
Hyckel, P.7
Kosmehl, H.8
-
37
-
-
0036185466
-
Skeletal muscle mRNA levels for cathepsin B, but not components of the ubiquitin-proteasome pathway, are increased in patients with lung cancer referred for thoracotomy
-
Jagoe, R.T., Redfern, C.P, Roberts, R.G., Gibson, G.J., Goodship, T.H. (2002) Skeletal muscle mRNA levels for cathepsin B, but not components of the ubiquitin-proteasome pathway, are increased in patients with lung cancer referred for thoracotomy. Clin. Sci., 102, 353-361.
-
(2002)
Clin. Sci.
, vol.102
, pp. 353-361
-
-
Jagoe, R.T.1
Redfern, C.P.2
Roberts, R.G.3
Gibson, G.J.4
Goodship, T.H.5
-
38
-
-
0035071162
-
Reduced expression of laminin alpha 3 and alpha 5 chains in non-small cell lung cancers
-
Akashi, T., Ito, E., Eishi, Y., Koike, M., Nakamura, K. and Burgeson. R.E. (2001) Reduced expression of laminin alpha 3 and alpha 5 chains in non-small cell lung cancers. Jpn. J. Cancer Res., 92, 293-301.
-
(2001)
Jpn. J. Cancer Res.
, vol.92
, pp. 293-301
-
-
Akashi, T.1
Ito, E.2
Eishi, Y.3
Koike, M.4
Nakamura, K.5
Burgeson, R.E.6
-
39
-
-
0033030593
-
Functional loss of E-cadherin and cadherin-11 alleles on chromosome 16q22 in colonic cancer
-
Braungart, E., Schumacher, C., Hartmann, E., Nekarda, H., Becker, K.F., Hofler, H., Atkinson, M.J. (1999) Functional loss of E-cadherin and cadherin-11 alleles on chromosome 16q22 in colonic cancer. J. Pathol., 187, 530-534.
-
(1999)
J. Pathol.
, vol.187
, pp. 530-534
-
-
Braungart, E.1
Schumacher, C.2
Hartmann, E.3
Nekarda, H.4
Becker, K.F.5
Hofler, H.6
Atkinson, M.J.7
-
40
-
-
0035728324
-
Transcriptional regulation of IGF-I receptor gene expression by the PAX3-FKHR oncoprotein
-
Ayalon, D., Glaser, T. and Werner, H. (2001) Transcriptional regulation of IGF-I receptor gene expression by the PAX3-FKHR oncoprotein. Growth Horm. IGF Res., 11, 289-297.
-
(2001)
Growth Horm. IGF Res.
, vol.11
, pp. 289-297
-
-
Ayalon, D.1
Glaser, T.2
Werner, H.3
-
41
-
-
0033676804
-
Loss of annexin 1 correlates with early onset of tumorigenesis in esophageal and prostate carcinoma
-
Paweletz, C.P., Ornstein, D.K., Roth, M.J., Bichsel, V.E., Gillespie, J.W., Calvert, V.S., Vocke, C.D., Hewitt, S.M., Duray, P.H., Herring, J. et al. (2000) Loss of annexin 1 correlates with early onset of tumorigenesis in esophageal and prostate carcinoma. Cancer. Res., 60, 6293-6297.
-
(2000)
Cancer Res.
, vol.60
, pp. 6293-6297
-
-
Paweletz, C.P.1
Ornstein, D.K.2
Roth, M.J.3
Bichsel, V.E.4
Gillespie, J.W.5
Calvert, V.S.6
Vocke, C.D.7
Hewitt, S.M.8
Duray, P.H.9
Herring, J.10
-
42
-
-
0034923013
-
On differential variability of expression ratios, improving statistical inference about gene expression changes from microarray data
-
Newton, M.A., Kendziorski, C.M., Richmond, C.S., Blatter, F.R. and Tsui, K.W. (2001) On differential variability of expression ratios, improving statistical inference about gene expression changes from microarray data. J. Comp. Biol., 8, 37-52.
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(2001)
J. Comp. Biol.
, vol.8
, pp. 37-52
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Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blatter, F.R.4
Tsui, K.W.5
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