Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa)

Proteomics

Volumn 7, Issue 24, 2007, Pages 4511-4527

  Tan, Feng ^a   Li, Guosheng ^a   Chitteti, Brahmananda Reddy ^a   Peng, Zhaohua ^a  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

Chromatin; Chromatin associated proteins; Phosphoproteome; Rice (Oryza sativa)

Indexed keywords

HISTONE; PROTEOME;

ARTICLE; CHROMATIN; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOSOME; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MODIFICATION; PROTEIN PURIFICATION; RICE; STAINING; UNINDEXED SEQUENCE;

BLOTTING, WESTERN; CHROMATIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MASS SPECTROMETRY; ORYZA SATIVA; PHOSPHOPROTEINS; PLANT PROTEINS; PROTEOME; PROTOPLASTS; SUBCELLULAR FRACTIONS;

EUKARYOTA; ORYZA SATIVA;

EID: 38049067580     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700580     Document Type: Article

References (57)

1. Kornberg, R. D., Science 1974, 184, 868-871.
2. Olins, A. L., Olins, D. E., Science 1974, 183, 330-332.
3. Horn, P. J., Peterson, C. L., Science 2002, 297, 1824-1827.
4. Finch, J. T., Klug, A., Proc. Natl. Acad. Sci. USA 1976, 73, 1897-1901.
5. Robinson, P. J., Rhodes, D., Curr. Opin. Struct. Biol. 2006, 16, 336-343.
6. Woodcock, C. L., Skoultchi, A. I., Fan, Y., Chromosome Res. 2006, 14, 17-25.
7. Misteli, T., Science 2001, 291, 843-847.
8. Fischle, W., Wang, Y., Allis, C. D., Curr. Opin. Cell Biol. 2003, 15, 172-183.
9. Espada, J., Esteller, M., Cell. Mol. Life Sci. 2007, 64, 449-457.
10. Laemmli, U. K., Pharmacol. Rev. 1978, 30, 469-476.
11. Tackett, A. J., Dilworth, D. J., Davey, M. J., O'Donnell, M. et al., J. Cell. Biol. 2005, 169, 35-47.
12. Cohen, B. A., Mitra, R. D., Hughes, J. D., Church, G. M., Nat. Genet. 2000, 26, 183-186.
13. Labrador, M., Corces, V. G., Cell 2002, 111, 151-154.
14. Burgess-Beusse, B., Farrell, C., Gaszner, M., Litt, M. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 16433-16437.
15. Nemeth, A., Langst, G., Brief. Funct. Genomic. Proteomic. 2004, 2, 334-343.
16. Gerasimova, T. I., Byrd, K., Corces, V. G., Mol. Cell. 2000, 6, 1025-1035.
17. Ishii, K., Arib, G., Lin, C., Van Houwe, G., Laemmli, U. K., Cell 2002, 109, 551-562.
18. Shelby, R. D., Hahn, K. M., Sullivan, K. F., J. Cell. Biol. 1996, 135, 545-557.
19. Li, G., Sudlow, G., Belmont, A. S., J. Cell. Biol. 1998, 140, 975-989.
20. Hozak, P., Hassan, A. B., Jackson, D. A., Cook, P. R., Cell 1993, 73, 361-373.
21. Uchiyama, S., Kobayashi, S., Takata, H., Ishihara, T. et al., J. Biol. Chem. 2005, 280, 16994-17004.
22. Chu, D. S., Liu, H. B., Nix, P., Wu, T. F. et al., Nature 2006, 443, 101-105.
23. Shiio, Y., Eisenman, R. N., Yi, E. C., Donohoe, S. et al., J. Am. Soc. Mass Spectrom. 2003, 14, 696-703.
24. Baba, A., Hasezawa, S., Syono, K., Plant Cell Physiol. 1986, 27, 463-471.
25. Kyozuka, J., Shimamoto, K., in: Lindsey (Ed.), Plant Tissue Culture Manual, B1, Kluwer Academic Publisher, Dordrecht 1991, pp. 1-16.
26. Yamada, Y., Zhi-Qi, Y., Ding-Tai, T., Plant Cell Rep. 1986, 5, 85-88.
27. Vengerov, Y. Y., Popenko, V. I., Nucleic Acids Res. 1977, 4, 3017-3027.
28. Hurkman, W. J., Tanaka, C. K., Plant Physiol. 1986, 81, 802-806.
29. Saravanan, R. S., Rose, J. K., Proteomics 2004, 4, 2522-2532.
30. Peng, Z., Serino, G., Deng, X. W., Plant Cell 2001, 13, 2393-2407.
31. Peng, Z., Serino, G., Deng, X. W., Development 2001, 128, 4277-4288.
32. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Nat. Genet. 2000, 25, 25-29.
33. McCarthy, F. M., Bridges, S. M., Wang, N., Magee, G. B. et al., Nucleic Acids Res. 2007, 35, D599-D603.
34. Chamovitz, D. A., Wei, N., Osterlund, M. T., von Arnim, A. G. et al., Cell 1996, 86, 115-121.
35. Mazzola, J. L., Sirover, M. A., Neurotoxicology 2002, 23, 603-609.
36. Zheng, L., Roeder, R. G., Luo, Y., Cell 2003, 114, 255-266.
37. Schulenberg, B., Goodman, T. N., Aggeler, R., Capaldi, R. A., Patron, W. F., Electrophoresis 2004, 25, 2526-2532.
38. Steinberg, T. H., Agnew, B. J., Gee, K. R., Leung, W. Y. et al., Proteomics 2003, 3, 1128-1144.
39. Agrawal, G. K., Thelen, J. J., Proteomics 2005, 5, 4684-4688.
40. Stasyk, T., Morandell, S., Bakry, R., Feuerstein, I. et al., Electrophoresis 2005, 26, 2850-2854.
41. Agrawal, G. K., Thelen, J. J., Mol. Cell. Proteomics 2006, 5, 2044-2059.
42. Chitteti, B. R., Peng, Z., Proteomics 2007, 7, 1473-1500.
43. Chitteti, B. R., Peng, Z., J. Proteome Res. 2007, 6, 1718-1727.
44. Bernstein, E., Hake, S. B., Biochem. Cell Biol. 2006, 84, 505-517.
45. Hake, S. B., Allis, C. D., Proc. Natl. Acad Sci. USA 2006, 103, 6428-6435.
46. Hall, D. A., Zhu, H., Zhu, X. W., Royce, T. et al., Science 2004, 306, 482-484.
47. Zhao, K., Wang, W., Rando, O. J., Xue, Y. et al., Cell 1998, 95, 625-636.
48. Scheer, U., Hinssen, H., Franke, W. W., Jockusch, B. M., Cell 1984, 39, 111-122.
49. Mallick, P., Schirle, M., Chen, S. S., Flory, M. R. et al., Nat. Biotechnol. 2007, 25, 125-131.
50. Rivett, A. J., Bose, S., Brooks, P., Broadfoot, K. I., Biochimie 2001, 83, 363-366.
51. Kruiswijk, T., de Hey, J. T., Planta, R. J., Biochem. J. 1978, 175, 213-219.
52. Vilardell, J., Goday, A., Freire, M., Torrent, M. et al., Plant Mol. Biol. 1990, 14, 423-432.
53. Yang, P., Chen, C., Wang, Z., Fan, B., Chen, Z., Plant J. 1999, 18, 141-149.
54. Larsen, M. R., Thingholm, T. E., Jensen, O. N., Roepstorff, P., Jorgensen, T. J., Mol. Cell. Proteomics 2005, 4, 873-886.
55. Ficarro, S. B., McCleland, M. L., Stukenberg, P. T., Burke, D. J. et al., Nat. Biotechnol. 2002, 20, 301-305.
56. Maccarrone, G., Kolb, N., Teplytska, L., Birg, I. et al., Electrophoresis 2006, 27, 4585-4595.
57. Jones, A. M., Bennett, M. H., Mansfield, J. W., Grant, M., Proteomics 2006, 6, 4155-4165.