메뉴 건너뛰기




Volumn 31, Issue 8, 2007, Pages 803-812

Detecting haplotype effects in genomewide association studies

Author keywords

Case control studies; Complex diseases; HapMap; Linkage disequilibrium; Rheumatoid arthritis; SNPs; Statistical significance

Indexed keywords

ADULT; ARTICLE; DISEASE ASSOCIATION; GENETIC ASSOCIATION; HAPLOTYPE; HAPLOTYPE MAP; HUMAN; MONTE CARLO METHOD; RHEUMATOID ARTHRITIS; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS;

EID: 38049026747     PISSN: 07410395     EISSN: 10982272     Source Type: Journal    
DOI: 10.1002/gepi.20242     Document Type: Article
Times cited : (36)

References (34)
  • 1
    • 0035058585 scopus 로고    scopus 로고
    • Haplotypes vs single marker linkage disequilibrium tests: What do we gain?
    • Akey J, Jin L, Xiong M. 2001. Haplotypes vs single marker linkage disequilibrium tests: what do we gain? Eur J Hum Genet 9: 291-300.
    • (2001) Eur J Hum Genet , vol.9 , pp. 291-300
    • Akey, J.1    Jin, L.2    Xiong, M.3
  • 3
    • 33747838783 scopus 로고    scopus 로고
    • Relaxed Significance Criteria for Linkage Analysis
    • Chen L, Storey JD. 2006. Relaxed Significance Criteria for Linkage Analysis. Genetics 173:2371-2381.
    • (2006) Genetics , vol.173 , pp. 2371-2381
    • Chen, L.1    Storey, J.D.2
  • 4
    • 0030688004 scopus 로고    scopus 로고
    • Variations on a theme: Cataloging human DNA sequence variation
    • Collins FS, Guyer MS, Chakravarti A. 1997. Variations on a theme: cataloging human DNA sequence variation. Science 278: 1580-1581.
    • (1997) Science , vol.278 , pp. 1580-1581
    • Collins, F.S.1    Guyer, M.S.2    Chakravarti, A.3
  • 6
    • 3042591234 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes
    • Durrant C, Zondervan KT, Cardon LR, Hunt S, Deloukas P, Morris AP. 2004. Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes. Am J Hum Genet 75:35-43.
    • (2004) Am J Hum Genet , vol.75 , pp. 35-43
    • Durrant, C.1    Zondervan, K.T.2    Cardon, L.R.3    Hunt, S.4    Deloukas, P.5    Morris, A.P.6
  • 7
    • 0344410771 scopus 로고    scopus 로고
    • Inference on haplotype effects in case-control studies using unphased genotype data
    • Epstein MP, Satten GA. 2003. Inference on haplotype effects in case-control studies using unphased genotype data. Am J Hum Genet 73:1316-1329.
    • (2003) Am J Hum Genet , vol.73 , pp. 1316-1329
    • Epstein, M.P.1    Satten, G.A.2
  • 8
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier L, Slatkin M. 1995. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12:921-927.
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 10
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437:1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 12
  • 14
    • 23744439164 scopus 로고    scopus 로고
    • Generalizations of the familywise error rate
    • Lehmann EL, Romano JP. 2005. Generalizations of the familywise error rate. Ann Stat 33:1138-1154.
    • (2005) Ann Stat , vol.33 , pp. 1138-1154
    • Lehmann, E.L.1    Romano, J.P.2
  • 15
    • 15944388957 scopus 로고    scopus 로고
    • An efficient Monte Carlo approach to assessing statistical significance in genomic studies
    • Lin DY. 2005. An efficient Monte Carlo approach to assessing statistical significance in genomic studies. Bioinformatics 21: 781-787.
    • (2005) Bioinformatics , vol.21 , pp. 781-787
    • Lin, D.Y.1
  • 16
    • 28344450089 scopus 로고    scopus 로고
    • Maximum likelihood estimation of haplotype effects and haplotype-environment interactions in association studies
    • Lin DY, Zeng D, Millikan R. 2005. Maximum likelihood estimation of haplotype effects and haplotype-environment interactions in association studies. Genet Epidemiol 29:299-312.
    • (2005) Genet Epidemiol , vol.29 , pp. 299-312
    • Lin, D.Y.1    Zeng, D.2    Millikan, R.3
  • 17
    • 33847181748 scopus 로고    scopus 로고
    • On the use of inferred haplotypes in downstream analyses
    • Lin DY, Huang BE. 2007. On the use of inferred haplotypes in downstream analyses. Am J Hum Genet 80:577-579.
    • (2007) Am J Hum Genet , vol.80 , pp. 577-579
    • Lin, D.Y.1    Huang, B.E.2
  • 18
    • 13144282294 scopus 로고    scopus 로고
    • Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies
    • Lin S, Chakravarti A, Cutler DJ. 2004. Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies. Nat Genet 36:1181-1188.
    • (2004) Nat Genet , vol.36 , pp. 1181-1188
    • Lin, S.1    Chakravarti, A.2    Cutler, D.J.3
  • 19
    • 27244451809 scopus 로고    scopus 로고
    • Maraganore DM, de Andrade M, Lesnick TG, Strain KJ, Farrer MJ, Rocca WA, Pant PVK, Frazer KA, Cox DR, Ballinger DG. 2005. High-resolution whole-genome association study of Parkinson disease. Am J Hum Genet 77:685-693.
    • Maraganore DM, de Andrade M, Lesnick TG, Strain KJ, Farrer MJ, Rocca WA, Pant PVK, Frazer KA, Cox DR, Ballinger DG. 2005. High-resolution whole-genome association study of Parkinson disease. Am J Hum Genet 77:685-693.
  • 21
    • 0035152589 scopus 로고    scopus 로고
    • Suggestive evidence for association of human chromosome 18q12-q21 and its orthologue on rat and mouse chromosome 18 with several autoimmune diseases
    • Merriman TR, Cordell HJ, Eaves IA, Danoy PA, Coraddu F, Barber R, Cucca F, Broadley S, Sawcer S, Compston A, et al. 2001. Suggestive evidence for association of human chromosome 18q12-q21 and its orthologue on rat and mouse chromosome 18 with several autoimmune diseases. Diabetes 50:184-194.
    • (2001) Diabetes , vol.50 , pp. 184-194
    • Merriman, T.R.1    Cordell, H.J.2    Eaves, I.A.3    Danoy, P.A.4    Coraddu, F.5    Barber, R.6    Cucca, F.7    Broadley, S.8    Sawcer, S.9    Compston, A.10
  • 22
    • 0036792816 scopus 로고    scopus 로고
    • On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles
    • Morris RW, Kaplan NL. 2002. On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles. Genet Epidemiol 23:221-233.
    • (2002) Genet Epidemiol , vol.23 , pp. 221-233
    • Morris, R.W.1    Kaplan, N.L.2
  • 23
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • Niu T, Qin ZS, Xu X, Liu JS. 2002. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am J Hum Genet 70:157-169.
    • (2002) Am J Hum Genet , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 26
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K. 1996. The future of genetic studies of complex human diseases. Science 273:1616-1617.
    • (1996) Science , vol.273 , pp. 1616-1617
    • Risch, N.1    Merikangas, K.2
  • 27
    • 0036155283 scopus 로고    scopus 로고
    • Score tests for association between traits and haplotypes when linkage phase is ambiguous
    • Schaid DJ, Rowland CM, Tines DE, Jacobson RM, Poland GA. 2002. Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am J Hum Genet 70:425-434.
    • (2002) Am J Hum Genet , vol.70 , pp. 425-434
    • Schaid, D.J.1    Rowland, C.M.2    Tines, D.E.3    Jacobson, R.M.4    Poland, G.A.5
  • 28
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989.
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 30
    • 23944469845 scopus 로고    scopus 로고
    • Recent developments in genomewide association scans: A workshop summary and review
    • Thomas DC, Haile RW, Duggan D. 2005. Recent developments in genomewide association scans: a workshop summary and review. Am J Hum Genet 77:337-345.
    • (2005) Am J Hum Genet , vol.77 , pp. 337-345
    • Thomas, D.C.1    Haile, R.W.2    Duggan, D.3
  • 31
    • 31544481920 scopus 로고    scopus 로고
    • Regression-Based Association Analysis with Clustered Haplotypes through Use of Genotypes
    • Tzeng J-Y, Wang C-H, Kao J-T, Hsiao CK. 2006. Regression-Based Association Analysis with Clustered Haplotypes through Use of Genotypes. Am J Hum Genet 78:231-242.
    • (2006) Am J Hum Genet , vol.78 , pp. 231-242
    • Tzeng, J.-Y.1    Wang, C.-H.2    Kao, J.-T.3    Hsiao, C.K.4
  • 33
    • 0036284203 scopus 로고    scopus 로고
    • Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals
    • Zaykin DV, Westfall PH, Young SS, Karnoub MA, Wagner MJ, Ehm MG. 2002. Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals. Hum Hered 53:79-91.
    • (2002) Hum Hered , vol.53 , pp. 79-91
    • Zaykin, D.V.1    Westfall, P.H.2    Young, S.S.3    Karnoub, M.A.4    Wagner, M.J.5    Ehm, M.G.6
  • 34
    • 0038406155 scopus 로고    scopus 로고
    • A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies
    • Zhao LP, Li SS, Khalid N. 2003. A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies. Am J Hum Genet 72:1231-1250.
    • (2003) Am J Hum Genet , vol.72 , pp. 1231-1250
    • Zhao, L.P.1    Li, S.S.2    Khalid, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.