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Volumn 8, Issue , 2007, Pages

Application of amino acid occurrence for discriminating different folding types of globular proteins

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID COMPOSITIONS; AMINO ACID PROPERTIES; AMINO ACID SEQUENCE; DISCRIMINATION ACCURACY; GLOBULAR PROTEINS; LINEAR DISCRIMINANT ANALYSIS; PROTEIN STRUCTURE PREDICTION; THREE-DIMENSIONAL STRUCTURE;

EID: 37749024654     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-404     Document Type: Article
Times cited : (62)

References (26)
  • 1
    • 0023054768 scopus 로고
    • Prediction of protein structural class by discriminant analysis
    • 3778917
    • Klein P Prediction of protein structural class by discriminant analysis Biochim Biophys Acta 1986, 874:205-215. 3778917
    • (1986) Biochim Biophys Acta , vol.874 , pp. 205-215
    • Klein, P.1
  • 2
    • 0027054450 scopus 로고
    • Diagrammatization of codon usage in 339 human immunodeficiency virus proteins and its biological implication
    • 1493047
    • Chou KC Zhang CT Diagrammatization of codon usage in 339 human immunodeficiency virus proteins and its biological implication AIDS Res Hum Retroviruses 1992, 8:1967-1976. 1493047
    • (1992) AIDS Res Hum Retroviruses , vol.8 , pp. 1967-1976
    • Chou, K.C.1    Zhang, C.T.2
  • 3
    • 0028919502 scopus 로고
    • Prediction of protein secondary structures from their hydrophobic characteristics
    • 7775015
    • Gromiha MM Ponnuswamy PK Prediction of protein secondary structures from their hydrophobic characteristics Int J Pept Protein Res 1995, 45:225-240. 7775015
    • (1995) Int J Pept Protein Res , vol.45 , pp. 225-240
    • Gromiha, M.M.1    Ponnuswamy, P.K.2
  • 4
    • 0000520412 scopus 로고    scopus 로고
    • Prediction of protein (domain) structural classes based on amino-acid index
    • 10.1046/j.1432-1327.1999.00947.x 10583400
    • Bu WS Feng ZP Zhang Z Zhang CT Prediction of protein (domain) structural classes based on amino-acid index Eur J Biochem 1999, 266:1043-1049. 10.1046/j.1432-1327.1999.00947.x 10583400
    • (1999) Eur J Biochem , vol.266 , pp. 1043-1049
    • Bu, W.S.1    Feng, Z.P.2    Zhang, Z.3    Zhang, C.T.4
  • 5
    • 0034141493 scopus 로고    scopus 로고
    • How good is prediction of protein structural class by the component-coupled method?
    • 10.1002/(SICI)1097-0134(20000201)38:2<165::AID-PROT5>3.0.CO;2-V 10656263
    • Wang ZZ Yuan Z How good is prediction of protein structural class by the component-coupled method? Proteins 2000, 38:165-175. 10.1002/ (SICI)1097-0134(20000201)38:2<165::AID-PROT5>3.0.CO;2-V 10656263
    • (2000) Proteins , vol.38 , pp. 165-175
    • Wang, Z.Z.1    Yuan, Z.2
  • 6
    • 0034672751 scopus 로고    scopus 로고
    • Structural class prediction: An application of residue distribution along the sequence
    • 10.1016/S0301-4622(00)00201-5 11152278
    • Kumarevel TS Gromiha MM Ponnuswamy MN Structural class prediction: An application of residue distribution along the sequence Biophys Chem 2000, 88:81-101. 10.1016/S0301-4622(00)00201-5 11152278
    • (2000) Biophys Chem , vol.88 , pp. 81-101
    • Kumarevel, T.S.1    Gromiha, M.M.2    Ponnuswamy, M.N.3
  • 7
    • 2442671554 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins in a hybridization space
    • 10.1093/bioinformatics/bth054 14764553
    • Cai YD Chou KC Predicting subcellular localization of proteins in a hybridization space Bioinformatics 2004, 20:1151-1156. 10.1093/ bioinformatics/bth054 14764553
    • (2004) Bioinformatics , vol.20 , pp. 1151-1156
    • Cai, Y.D.1    Chou, K.C.2
  • 8
    • 22144498433 scopus 로고    scopus 로고
    • Using supervised fuzzy clustering to predict protein structural classes
    • 10.1016/j.bbrc.2005.06.128 16023077
    • Shen HB Yang J Liu XJ Chou KC Using supervised fuzzy clustering to predict protein structural classes Biochem Biophys Res Commun 2005, 334:577-581. 10.1016/j.bbrc.2005.06.128 16023077
    • (2005) Biochem Biophys Res Commun , vol.334 , pp. 577-581
    • Shen, H.B.1    Yang, J.2    Liu, X.J.3    Chou, K.C.4
  • 9
    • 33646568767 scopus 로고    scopus 로고
    • Amino Acid Principal Component Analysis (AAPCA) and its application in protein structural class prediction
    • Du QS Jiang ZQ He WZ Li DP Chou KC Amino Acid Principal Component Analysis (AAPCA) and its application in protein structural class prediction J Bio Str Dyn 2006, 23:635-640.
    • (2006) J Bio Str Dyn , vol.23 , pp. 635-640
    • Du, Q.S.1    Jiang, Z.Q.2    He, W.Z.3    Li, D.P.4    Chou, K.C.5
  • 10
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • 10.1006/jmbi.2001.4762 11419950
    • Shi J Blundell TL Mizuguchi K FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties J Mol Biol 2001, 310:243-257. 10.1006/ jmbi.2001.4762 11419950
    • (2001) J Mol Biol , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3
  • 11
    • 11344292852 scopus 로고    scopus 로고
    • Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
    • 1408319 15523666 10.1002/prot.20308
    • Zhou H Y Z Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments Proteins 2005, 58:321-328. 1408319 15523666 10.1002/prot.20308
    • (2005) Proteins , vol.58 , pp. 321-328
    • Zhou, H.Y.Z.1
  • 12
    • 33745616114 scopus 로고    scopus 로고
    • A machine learning informationretrieval approach to protein fold recognition
    • 10.1093/bioinformatics/btl102 16547073
    • Cheng J Baldi P A machine learning informationretrieval approach to protein fold recognition Bioinformatics 2006, 22:1456-63. 10.1093/ bioinformatics/btl102 16547073
    • (2006) Bioinformatics , vol.22 , pp. 1456-1463
    • Cheng, J.1    Baldi, P.2
  • 13
    • 16344376554 scopus 로고    scopus 로고
    • A Simple statistical method for discriminating outer membrane proteins with better accuracy
    • 10.1093/bioinformatics/bti126 15531602
    • Gromiha MM Suwa M A Simple statistical method for discriminating outer membrane proteins with better accuracy Bioinformatics 2005, 21:961-968. 10.1093/bioinformatics/bti126 15531602
    • (2005) Bioinformatics , vol.21 , pp. 961-968
    • Gromiha, M.M.1    Suwa, M.2
  • 14
    • 0031826040 scopus 로고    scopus 로고
    • SOSUI: Classification and secondary structure prediction system for membrane proteins
    • 10.1093/bioinformatics/14.4.378 9632836
    • Hirokawa T Boon-Chieng S Mitaku S SOSUI: Classification and secondary structure prediction system for membrane proteins Bioinformatics 1998, 14:378-379. 10.1093/bioinformatics/14.4.378 9632836
    • (1998) Bioinformatics , vol.14 , pp. 378-379
    • Hirokawa, T.1    Boon-Chieng, S.2    Mitaku, S.3
  • 15
    • 0034285487 scopus 로고    scopus 로고
    • Prediction of protein structural classes and subcellular locations
    • 10.2174/1389203003381379 12369916
    • Chou KC Prediction of protein structural classes and subcellular locations Curr Protein Pept Sci 2000, 1:171-208. 10.2174/ 1389203003381379 12369916
    • (2000) Curr Protein Pept Sci , vol.1 , pp. 171-208
    • Chou, K.C.1
  • 16
    • 33745362218 scopus 로고    scopus 로고
    • A Statistical method for predicting protein unfolding rates from amino acid sequence
    • 10.1021/ci050417u 16711769
    • Gromiha MM Selvaraj S Thangakani AM A Statistical method for predicting protein unfolding rates from amino acid sequence J Chem Inf Model 2006, 46:1503-1508. 10.1021/ci050417u 16711769
    • (2006) J Chem Inf Model , vol.46 , pp. 1503-1508
    • Gromiha, M.M.1    Selvaraj, S.2    Thangakani, A.M.3
  • 17
    • 0032863182 scopus 로고    scopus 로고
    • Relationship between amino acid properties and protein stability: Buried Mutations
    • 10.1023/A:1020603401001 10524774
    • Gromiha MM Oobatake M Kono H Uedaira H Sarai A Relationship between amino acid properties and protein stability: Buried Mutations J Protein Chem 1999, 18:565-578. 10.1023/A:1020603401001 10524774
    • (1999) J Protein Chem , vol.18 , pp. 565-578
    • Gromiha, M.M.1    Oobatake, M.2    Kono, H.3    Uedaira, H.4    Sarai, A.5
  • 18
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • 10.1093/bioinformatics/17.4.349 11301304
    • Ding HQD Dubchak I Multi-class protein fold recognition using support vector machines and neural networks Bioinformatics 2001, 17:349-358. 10.1093/bioinformatics/17.4.349 11301304
    • (2001) Bioinformatics , vol.17 , pp. 349-358
    • Ding, H.Q.D.1    Dubchak, I.2
  • 19
    • 33744815655 scopus 로고    scopus 로고
    • Proteins of the same fold and unrelated sequences have similar amino acid composition
    • 10.1002/prot.20964 16565950
    • Ofran Y Margalit H Proteins of the same fold and unrelated sequences have similar amino acid composition Proteins 2006, 64:275-279. 10.1002/ prot.20964 16565950
    • (2006) Proteins , vol.64 , pp. 275-279
    • Ofran, Y.1    Margalit, H.2
  • 20
    • 33747880465 scopus 로고    scopus 로고
    • Ensemble classifier for protein fold pattern recognition
    • 10.1093/bioinformatics/btl170 16672258
    • Shen HB Chou KC Ensemble classifier for protein fold pattern recognition Bioinformatics 2006, 22:1717-1722. 10.1093/bioinformatics/btl170 16672258
    • (2006) Bioinformatics , vol.22 , pp. 1717-1722
    • Shen, H.B.1    Chou, K.C.2
  • 21
    • 0032715527 scopus 로고    scopus 로고
    • Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins
    • 10.1016/S0301-4622(99)00103-9 10584295
    • Gromiha MM Oobatake M Sarai A Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins Biophysical Chemistry 1999, 82:51-67. 10.1016/S0301-4622(99)00103-9 10584295
    • (1999) Biophysical Chemistry , vol.82 , pp. 51-67
    • Gromiha, M.M.1    Oobatake, M.2    Sarai, A.3
  • 22
    • 0037025821 scopus 로고    scopus 로고
    • Importance of Mutant Position in Ramachandran Plot for Predicting Protein Stability of Surface Mutations
    • 10.1002/bip.10125 12115138
    • Gromiha MM Oobatake M Kono H Uedaira H Sarai A Importance of Mutant Position in Ramachandran Plot for Predicting Protein Stability of Surface Mutations Biopolymers 2002, 64:210-220. 10.1002/bip.10125 12115138
    • (2002) Biopolymers , vol.64 , pp. 210-220
    • Gromiha, M.M.1    Oobatake, M.2    Kono, H.3    Uedaira, H.4    Sarai, A.5
  • 23
    • 0141959709 scopus 로고    scopus 로고
    • Importance of Native-state Topology for Determining the Folding Rate of Two-state Proteins
    • 10.1021/ci0340308
    • Gromiha MM Importance of Native-state Topology for Determining the Folding Rate of Two-state Proteins J Chem Inf Comp Sci 2003, 43:1481-1485. 10.1021/ci0340308
    • (2003) J Chem Inf Comp Sci , vol.43 , pp. 1481-1485
    • Gromiha, M.M.1
  • 24
    • 84874645298 scopus 로고    scopus 로고
    • PROLDA
    • PROLDA http://granular.com/PROLDA/
  • 25
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • 10.1006/jmbi.1995.0159 7723011
    • Murzin AG Brenner SE Hubbard T Chothia C SCOP: A structural classification of proteins database for the investigation of sequences and structures J Mol Biol 1995, 247:536-540. 10.1006/jmbi.1995.0159 7723011
    • (1995) J Mol Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4


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