Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa

International Journal of Systematic Bacteriology

Volumn 47, Issue 1, 1997, Pages 54-57

  Mori, Katsumi ^a   Yamazaki, Koji ^b   Ishiyama, Tomoharu ^a,c   Katsumata, Masahiro ^a,d   Kobayashi, Kayo ^a,e   Kawai, Yuji ^b   Inoue, Norio ^b   Shinano, Haruo ^b  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^b HOKKAIDO UNIVERSITY   (Japan)

^c Ishiyama Miso Shoyu Co Ltd   (Japan)

^d Hagoromo Foods Corporation   (Japan)

^e Du Pont KK   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

ARTICLE; DNA SEQUENCE; GRAM POSITIVE BACTERIUM; LACTOBACILLUS; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); LACTOBACILLUS CASEI; LACTOBACILLUS PARACASEI; LACTOBACILLUS RHAMNOSUS; LACTOBACILLUS ZEAE; POSIBACTERIA;

EID: 0031013147     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-47-1-54     Document Type: Article

References (23)

1. Bentley, R. W., J. A. Leigh, and M. D. Collins. 1991. Intragenetic structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences. Int. J. Syst. Bacteriol. 41:487-494.
2. Bio-Rad Laboratories. 1992. InstaGene purification matrix manual. Bio-Rad Laboratories, Richmond, Calif.
3. Collins, M. D., B. A. Phillips, and P. Zanoni. 1989. Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov. Int. J. Syst. Bacteriol. 39:105-108.
4. Collins, M. D., C. Ash, J. A. E. Farrow, S. Wallbanks, and A. M. Williams. 1989. 16S ribosomal ribonucleic acid sequence analyses of lactococci and related taxa, description of Vagococcus fluvialis gen. nov., sp. nov. J. Appl. Bacteriol. 67:453-460.
5. Collins, M. D., A. M. Williams, and S. Wallbanks. 1990. The phylogeny of Aerococcus and Pediococcus as determined by 16S rRNA sequence analysis: description of Tetragenococcus gen. nov. FEMS Microbiol. Lett. 70:255-262.
6. Collins, M. D., U. Rodrigues, C. Ash, M. Aguirre, J. A. E. Farrow, A. Martinez-Murcia, B. A. Philips, A. M. Williams, and S. Wallbanks. 1991. Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 77:5-12.
7. Dellaglio, F., V. Bottazzi, and M. Vescovo. 1975. Deoxyribonucleic acid homology among Lactobacillus species of the subgenus Streptobacterium Orla-Jensen. Int. J. Syst. Bacteriol. 25:160-1.72.
8. Dellaglio, F., L. M. T. Dicks, M. Du Toit, and S. Torriani. 1991. Designation of ATCC 334 in place of ATCC 393 (NCDO 161) as the neotype strain of Lactobacillus casei subsp. casei and rejection of the name Lactobacillus paracasei (Collins et al., 1989). Request for an opinion. Int. J. Syst. Bacteriol. 41:340-342.
9. Dicks, L. M. T., E. M. Du Plessis, F. Dellaglio, and E. Lauer. 1996. Reclassification of Lactobacillus casei subsp. casei ATCC 393 and Lactobacillus rhamnosus ATCC 15820 as Lactobacillus zeae nom. rev., designation of ATCC 334 as the neotype of L. casei subsp. casei, and rejection of the name Lactobacillus paracasei. Int. J. Syst. Bacteriol. 46:337-340.
10. Hammes, W. P., N. Weiss, and W. Holzapfel. 1992. The genera Lactobacillus and Carnobacterium, p. 1535-1594. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes, 2nd ed., vol. 2. Springer-Verlag, New York, N.Y.
11. Kandler, O., and N. Weiss. 1986. Genus Lactobacillus Beijerinck 1901, p. 1209-1234. In P. H. A. Sneath, N. S. Mair, M. E. Sharpe, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 2. The Williams & Wilkins Co., Baltimore, Md.
12. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
13. Martinez-Murcia, A. J., and M. D. Collins. 1990. A phylogenetic analysis of the genus Leuconostoc based on reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 70:73-84.
14. Perkin-Elmer Co. 1993. 373 DNA sequencing system user's manual. Perkin-Elmer Co., Norwalk, Conn.
15. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
16. Skerman, V. B. D., V. McGowan, and P. H. A. Sneath (ed.). 1980. Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30:225-420.
17. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
18. Tamura, K., and M. Nei. 1993. Estimation of the numbers of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
19. Walbank, S., A. T. Martinez-Murcia, J. L. Fryer, B. A. Phillips, and M. D. Collins. 1990. 16S rRNA determination for members of genus Carnobacterium and related lactic acid bacteria and description of Vagococcus salmoninarum sp. nov. Int. J. Syst. Bacteriol. 40:224-230.
20. Wayne, L. G. 1994. Action of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinion published between January 1985 and July 1993. Int. J. Syst. Bacteriol. 44:177-178.
21. Wittwer, C. T., and D. J. Garling. 1991. Rapid cycle DNA amplification: time and temperature optimization. BioTechniques 10:76-83.
22. Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
23. Yang, D., and C. R. Woese. 1989. Phylogenetic structure of the "Leuconostoc": an interesting case of a rapidly evolving organism. Syst. Appl. Microbiol. 12:154-149.