Spectral self-interference microscopy for low-signal nanoscale axial imaging

Journal of the Optical Society of America A: Optics and Image Science, and Vision

Volumn 24, Issue 11, 2007, Pages 3587-3599

  Davis, Brynmor J ^a   Swan, Anna K ^b   Ünlü, M Selim ^b   Karl, William C ^b   Goldberg, Bennett B ^b,c   Schotland, John C ^d   Carney, P Scott ^a,e  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b Boston University   (United States)

^c Boston University   (United States)

^d UNIVERSITY OF PENNSYLVANIA   (United States)

^e University of Illinois at Urbana Champaign   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; LIGHT REFLECTION; MONTE CARLO METHODS; NUMERICAL ANALYSIS; OPTICAL MICROSCOPY; OPTICAL SIGNAL PROCESSING;

NANOSCALE AXIAL IMAGING; REFLECTION MICROSCOPY; SPECTRAL SELF-INTERFERENCE MICROSCOPY (SSM);

IMAGING TECHNIQUES;

FLUORESCENT DYE;

ARTICLE; CHEMISTRY; COMPUTER ASSISTED DIAGNOSIS; FLUORESCENCE MICROSCOPY; METHODOLOGY; PHASE CONTRAST MICROSCOPY; THEORETICAL MODEL;

FLUORESCENT DYES; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE; MICROSCOPY, INTERFERENCE; MODELS, THEORETICAL;

EID: 37549034636     PISSN: 10847529     EISSN: None     Source Type: Journal    
DOI: 10.1364/JOSAA.24.003587     Document Type: Article

References (34)

1. D. A. Agard, Y. Hiraoka, P. Shaw, and J. W. Sedat, "Fluorescence microscopy in three dimensions," Methods Cell Biol. 30, 353-377 (1989).
2. J. Pawley, ed., Handbook of Biological Confocal Microscopy (Plenum, 1990).
3. K. I. Willig, S. O. Rizzoli, V. Westphal, J. Reinhard, and S. W. Hell, "STED microscopy reveals that synaptotagmin remains clustered after synaptic vesicle exocytosis," Nature 440, 935-939 (2006).
4. D. Axelrod, N. L. Thompson, and T. P. Burghart, "Total internal reflection fluorescence microscopy," J. Microsc. 129, 19-28 (1982).
5. T. Basché, W. E. Moerner, M. Orrit, and U. P. Wild, eds., Single-Molecule Optical Detection, Imaging and Spectroscopy (VCH, 1997).
6. S. Weiss, "Fluorescence spectroscopy of single biomolecules," Science 283, 1676-1683 (1999).
7. A. Yildiz, J. N. Forkey, S. A. McKinney, T. Ha, Y. E. Goldman, and P. R. Selvin, "Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization," Science 300, 2061-2065 (2003).
8. R. J. Ober, S. Ram, and E. S. Ward, "Localization accuracy in single-molecule microscopy," Biophys. J. 86, 1185-1200 (2004).
9. A. K. Swan, L. A. Moiseev, C. R. Cantor, B. Davis, S. B. Ippolito, W. C. Karl, B. B. Goldberg, and M. S. Ünlü, "Toward nanometer-scale resolution in fluorescence microscopy using spectral self-interference," IEEE J. Sel. Top. Quantum Electron. 9, 294-300 (2003).
10. L. Moiseev, M. S. Ünlü, A. K. Swan, B. B. Goldberg, and C. R. Cantor, "DNA conformation on surfaces measured by fluorescence self-interference," Proc. Natl. Acad. Sci. U.S.A. 103, 2623-2628 (2006).
11. M. Y. Ali, S. Uemura, K. Adachi, H. Itoh, K. Kinosita Jr., and S. Ishiwata, "Myosin V is a left-handed spiral motor on the right-handed actin helix," Nat. Struct. Biol. 9, 464-467 (2002).
12. L. Moiseev, C. R. Cantor, M. I. Aksun, M. Dogan, B. B. Goldberg, A. K. Swan, and M. S. Ünlü, "Spectral self-interference fluorescence microscopy," J. Appl. Phys. 96, 5311-5315 (2004).
13. P. S. Carney, V. Markel, and J. C. Schotland, "Near-field tomography without phase retrieval," Phys. Rev. Lett. 86, 5874-5877 (2001).
14. C.-T. Tai, Dyadic Green Functions in Electromagnetic Theory, 2nd ed. (IEEE, 1993), Chaps. 11-7, pp. 251-254.
15. B. Richards and E. Wolf, "Electromagnetic diffraction in optical systems. II. Structure of the image field in an aplanatic system," Proc. R. Soc. London, Ser. A 253, 358-379 (1959).
16. L. Novotny and B. Hecht, Principles of Nano-Optics (Cambridge U. Press, 2006), Chap. 3.6, pp. 61-66.
17. M. Böhmer and J. Enderlein, "Orientation imaging of single molecules by wide-field epifluorescence microscopy," J. Opt. Soc. Am. B 20, 554-559 (2003).
18. R. Hassey, E. J. Swain, N. I. Hammer, D. Venkataraman, and M. D. Barnes, "Probing the chiroptical response of a single molecule," Science 314, 1437-1439 (2006).
19. M. Nagorni and S. W. Hell, "Coherent use of opposing lenses for axial resolution increase in fluorescence microscopy. I. Comparative study of concepts," J. Opt. Soc. Am. A 18, 36-48 (2001).
20. B. E. A. Saleh and M. C. Teich, Fundamentals of Photonics (Wiley, 1991), pp. 80-107.
21. L. M. Delves and J. L. Mohamed, Computational Methods for Integral Equations (Cambridge U. Press, 1985).
22. S. M. Kay, Fundamentals of Statistical Signal Processing Estimation Theory (Prentice Hall, 1993).
23. J. Markham and J.-A. Conchello, "Fast maximum-likelihood image-restoration algorithms for three-dimensional fluorescence microscopy," J. Opt. Soc. Am. A 18, 1062-1071 (2001).
24. W. C. Karl, Handbook of Image and Video Processing (Academic, 2000), pp. 141-161.
25. W. H. Richardson, "Bayesian-based iterative method of image restoration," J. Opt. Soc. Am. 62, 55-59 (1972).
26. L. B. Lucy, "An iterative technique for the rectification of observed distributions," Astron. J. 79, 745-754 (1974).
27. R. Vio, J. Bardsley, and W. Wamsteker, "Least-squares methods with Poissonian noise: analysis and comparison with the Richardson-Lucy algorithm," Astron. Astrophys. 436, 741-755 (2005).
28. P. C. Hansen, Rank-Deficient and Discrete III-Posed Problems (SIAM, 1998), pp. 45-68.
29. B. J. Davis, M. Dogan, B. B. Goldberg, W. C. Karl, M. S. Ünlü, and A. K. Swan, "4Pi spectral self-interference microscopy," J. Opt. Soc. Am. A (to be published).
30. S. Ram, E. Ward, and R. Ober, "Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy," Proc. Natl. Acad. Sci. U.S.A. 103, 4457-4462 (2006).
31. D. P. Bertsekas, Non-Linear Programming, 2nd ed. (Athena Scientific, 1999).
32. C. Eggeling, J. Widengren, R. Rigler, and C. A. M. Seidel, "Photobleaching of fluorescent dyes under conditions used for single-molecule detection: evidence of two-step photolysis," Anal. Chem. 70, 2651-2659 (1998).
33. C. De Boor, A Practical Guide to Splines (Springer, 2001).
34. M. G. L. Gustafsson, "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy," J. Microsc. 198, 82-87 (2000).