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Volumn 18, Issue 5, 2001, Pages 1062-1071

Fast maximum-likelihood image-restoration algorithms for three-dimensional fluorescence microscopy

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; FLUORESCENCE MICROSCOPY; HUMAN; STANDARD; STATISTICAL MODEL; THEORETICAL MODEL; THREE DIMENSIONAL IMAGING; TIME;

EID: 0035350836     PISSN: 10847529     EISSN: 15208532     Source Type: Journal    
DOI: 10.1364/JOSAA.18.001062     Document Type: Article
Times cited : (48)

References (43)
  • 1
    • 0002239301 scopus 로고
    • Optical transfer of the three-dimensional object
    • B. R. Frieden, “Optical transfer of the three-dimensional object,” J. Opt. Soc. Am. 57, 56-66 (1967).
    • (1967) J. Opt. Soc. Am , vol.57 , pp. 56-66
    • Frieden, B.R.1
  • 2
    • 84975607722 scopus 로고
    • Enhanced 3-D reconstruction from confocal scanning microscope images. I. Deterministic and maximum likelihood reconstructions
    • J. A. Conchello and E. W. Hansen, “Enhanced 3-D reconstruction from confocal scanning microscope images. I. Deterministic and maximum likelihood reconstructions,” Appl. Opt. 29, 3795-3804 (1990).
    • (1990) Appl. Opt , vol.29 , pp. 3795-3804
    • Conchello, J.A.1    Hansen, E.W.2
  • 3
    • 0002693225 scopus 로고
    • Comparison of wide-field/deconvolution and confocal microscopy for 3D imaging
    • 2nd ed., J. B. Pawley, ed. (Plenum, New York
    • P. J. Shaw, “Comparison of wide-field/deconvolution and confocal microscopy for 3D imaging,” in Handbook of Biological Confocal Microscopy, 2nd ed., J. B. Pawley, ed. (Plenum, New York, 1995), pp. 373-387.
    • (1995) Handbook of Biological Confocal Microscopy , pp. 373-387
    • Shaw, P.J.1
  • 4
    • 0028997057 scopus 로고
    • Restoration of confocal images for quantitative image analysis
    • H. T. M. van der Voort and K. C. Strasters, “Restoration of confocal images for quantitative image analysis,” J. Mi-crosc. 178, 165-181 (1995).
    • (1995) J. Mi-Crosc , vol.178 , pp. 165-181
    • Van Der Voort, H.T.M.1    Strasters, K.C.2
  • 5
    • 0030947104 scopus 로고    scopus 로고
    • A quantitative comparison of image restoration methods for confocal microscopy
    • G. M. P. van Kempen, L. J. van Vliet, P. J. Verveer, and H. T. M. van der Voort, “A quantitative comparison of image restoration methods for confocal microscopy,” J. Microsc. 185, 354-365 (1997).
    • (1997) J. Microsc , vol.185 , pp. 354-365
    • Van Kempen, G.M.P.1    Van Vliet, L.J.2    Verveer, P.J.3    Van Der Voort, H.T.M.4
  • 6
    • 0030511985 scopus 로고    scopus 로고
    • Avalanche photodiode detection with object scanning and image restoration provides 2-4 fold resolution increase in two-photon fluorescence microscopy
    • H. Kano, H. T. M. van der Voort, M. Schrader, G. M. P. van Kempen, and S. W. Hell, “Avalanche photodiode detection with object scanning and image restoration provides 2-4 fold resolution increase in two-photon fluorescence microscopy,” Bioimaging 4, 187-197 (1996).
    • (1996) Bioimaging , vol.4 , pp. 187-197
    • Kano, H.1    Van Der Voort, H.T.M.2    Schrader, M.3    Van Kempen, G.M.P.4    Hell, S.W.5
  • 7
    • 0000201408 scopus 로고
    • Image reconstruction for 3-D light microscopy with a regularized linear method incorporating a smoothness prior
    • Visualization, R.S. Acharya and D. B. Goldgof, eds., Proc. SPIE 1905
    • C. Preza, M. I. Miller, and J.-A. Conchello, “Image reconstruction for 3-D light microscopy with a regularized linear method incorporating a smoothness prior,” in Biomedical Image Processing and Biomedical Visualization, R.S. Acharya and D. B. Goldgof, eds., Proc. SPIE 1905, 129-139 (1993).
    • (1993) Biomedical Image Processing and Biomedical , pp. 129-139
    • Preza, C.1    Miller, M.I.2    Conchello, J.-A.3
  • 8
    • 0021119618 scopus 로고
    • Optical sectioning microscopy,” Annu
    • D. A. Agard, “Optical sectioning microscopy,” Annu. Rev. Biophys. Bioeng. 13, 191-219 (1984).
    • (1984) Rev. Biophys. Bioeng , vol.13 , pp. 191-219
    • Agard, D.A.1
  • 10
    • 0029640071 scopus 로고
    • Superresolution three-dimensional images of fluorescence in cells with minimal light exposure
    • W. A. Carrington, R. M. Lynch, E. D. W. Moore, G. Isen- berg, K. E. Fogarty, and F. S. Fay, “Superresolution three-dimensional images of fluorescence in cells with minimal light exposure,” Science 268, 1483-1487 (1995).
    • (1995) Science , vol.268 , pp. 1483-1487
    • Carrington, W.A.1    Lynch, R.M.2    Moore, E.D.W.3    Isenberg, G.4    Fogarty, K.E.5    Fay, F.S.6
  • 11
    • 0021784216 scopus 로고
    • Reconstructing 3-D light-microscopic images by digital image processing
    • A. Erhardt, G. Zinser, D. Komitowski, and J. Bille, “Reconstructing 3-D light-microscopic images by digital image processing,” Appl. Opt. 24, 194-200 (1985).
    • (1985) Appl. Opt , vol.24 , pp. 194-200
    • Erhardt, A.1    Zinser, G.2    Komitowski, D.3    Bille, J.4
  • 12
    • 58149387092 scopus 로고    scopus 로고
    • Restoration of edges under Poisson noise using convex constraints with application to 3D optical microscopy
    • C. J. Cogswell, J.-A. Conchello, and T. Wilson, eds., Proc. SPIE 2984
    • S. S. Stefanou and E. W. Hansen, “Restoration of edges under Poisson noise using convex constraints with application to 3D optical microscopy,” in Three-Dimensional Microscopy: Image Acquisition and ProcessingIV, C. J. Cogswell, J.-A. Conchello, and T. Wilson, eds., Proc. SPIE 2984, 232-242 (1997).
    • (1997) Three-Dimensional Microscopy: Image Acquisition and Processingiv , pp. 232-242
    • Stefanou, S.S.1    Hansen, E.W.2
  • 13
    • 0001049838 scopus 로고
    • Expectation-maximization restoration of band limited, truncated point-process intensities with application in microscopy
    • T. J. Holmes, “Expectation-maximization restoration of band limited, truncated point-process intensities with application in microscopy,” J. Opt. Soc. Am. A 6, 1006-1014 (1989).
    • (1989) J. Opt. Soc. Am. A , vol.6 , pp. 1006-1014
    • Holmes, T.J.1
  • 14
    • 0000781777 scopus 로고
    • Maximum-likelihood image restoration adapted for noncoherent optical imaging
    • T. J. Holmes, “Maximum-likelihood image restoration adapted for noncoherent optical imaging,” J. Opt. Soc. Am. A 5, 666-673 (1988).
    • (1988) J. Opt. Soc. Am. A , vol.5 , pp. 666-673
    • Holmes, T.J.1
  • 15
    • 0027597868 scopus 로고
    • Maximum a posteriori estimation with Good’s roughness for optical sectioning microscopy
    • S. Joshi and M. I. Miller, “Maximum a posteriori estimation with Good’s roughness for optical sectioning microscopy,” J. Opt. Soc. Am. A 10, 1078-1085 (1993).
    • (1993) J. Opt. Soc. Am. A , vol.10 , pp. 1078-1085
    • Joshi, S.1    Miller, M.I.2
  • 16
    • 0026810442 scopus 로고
    • Regularized linear method for reconstruction of three-dimensional microscopic objects from optical sections
    • C. Preza, M. I. Miller, L. J. Thomas, Jr, and J. G. McNally, “Regularized linear method for reconstruction of three-dimensional microscopic objects from optical sections,” J. Opt. Soc. Am. A 9, 219-228 (1992).
    • (1992) J. Opt. Soc. Am. A , vol.9 , pp. 219-228
    • Preza, C.1    Miller, M.I.2    Thomas, L.J.3    McNally, J.G.4
  • 17
    • 0001676229 scopus 로고    scopus 로고
    • Efficient superresolution restoration algorithms using maximum a posteriori estimations with application to fluorescence microscopy
    • P. J. Verveer and T. M. Jovin, “Efficient superresolution restoration algorithms using maximum a posteriori estimations with application to fluorescence microscopy,” J. Opt. Soc. Am. A 14, 1696-1706 (1997).
    • (1997) J. Opt. Soc. Am. A , vol.14 , pp. 1696-1706
    • Verveer, P.J.1    Jovin, T.M.2
  • 18
    • 0032944772 scopus 로고    scopus 로고
    • A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy
    • P. J. Verveer, M. J. Gemkow, and T. M. Jovin, “A comparison of image restoration approaches applied to three-dimensional confocal and wide-field fluorescence microscopy,” J. Microsc. 193, 50-61 (1999).
    • (1999) J. Microsc , vol.193 , pp. 50-61
    • Verveer, P.J.1    Gemkow, M.J.2    Jovin, T.M.3
  • 19
    • 0025693865 scopus 로고
    • Image restoration in 3D microscopy with limited data
    • L. Smith, ed., Proc. SPIE 1205
    • W. A. Carrington, “Image restoration in 3D microscopy with limited data,” in Bioimaging and Two-Dimensional Spectroscopy, L. Smith, ed., Proc. SPIE 1205, 72-83 (1990).
    • (1990) Bioimaging and Two-Dimensional Spectroscopy , pp. 72-83
    • Carrington, W.A.1
  • 20
    • 0000338468 scopus 로고
    • 3D fluorescence imaging of single cells using image restoration
    • Cell Biology, J.K.FosketandS, Grinstein, eds. (Wiley-Liss, New York
    • W. A. Carrington, F. E. Fogarty, and F. S. Fay, “3D fluorescence imaging of single cells using image restoration,” in Noninvasive Techniques in Cell Biology, J.K.FosketandS. Grinstein, eds. (Wiley-Liss, New York, 1990), pp. 53-72.
    • (1990) Noninvasive Techniques , pp. 53-72
    • Carrington, W.A.1    Fogarty, F.E.2    Fay, F.S.3
  • 21
    • 0029721393 scopus 로고    scopus 로고
    • Fast regularization technique for expectation maximization algorithm for optical sectioning microscopy
    • C. J. Cogswell, G. S. Kino, and T. Wilson, eds., Proc. SPIE 2655
    • J. A. Conchello and J. G. McNally, “Fast regularization technique for expectation maximization algorithm for optical sectioning microscopy,” in Three-Dimensional Microscopy: Image Acquisition and ProcessingIII, C. J. Cogswell, G. S. Kino, and T. Wilson, eds., Proc. SPIE 2655, 199-208 (1996).
    • (1996) Three-Dimensional Microscopy: Image Acquisition and Processingiii , pp. 199-208
    • Conchello, J.A.1    McNally, J.G.2
  • 22
    • 85010122154 scopus 로고
    • Maximum likelihood from incomplete data via the EM algorithm
    • A. P. Dempster, N. M. Laird, and D. B. Rubin, “Maximum likelihood from incomplete data via the EM algorithm,” J. R. Statist. Soc. B 39, 1-38 (1977).
    • (1977) J. R. Statist. Soc. B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 23
    • 0028740321 scopus 로고
    • Super-resolution and point spread function sensitivity analysis of the expectation-maximization algorithm for computational optical sectioning microscopy
    • T.J.Schulzand D. L. Snyder, eds., Proc. SPIE 2302
    • J. A. Conchello, “Super-resolution and point spread function sensitivity analysis of the expectation-maximization algorithm for computational optical sectioning microscopy,” in Image Reconstruction and Restoration, T.J.Schulzand D. L. Snyder, eds., Proc. SPIE 2302, 369-378 (1994).
    • (1994) Image Reconstruction and Restoration , pp. 369-378
    • Conchello, J.A.1
  • 24
    • 0032186407 scopus 로고    scopus 로고
    • Superresolution and convergence properties of the expectation-maximization algorithm for maximum-likelihood deconvolution of incoherent images
    • J. A. Conchello, “Superresolution and convergence properties of the expectation-maximization algorithm for maximum-likelihood deconvolution of incoherent images,” J. Opt. Soc. Am. A 15, 2609-2619 (1998).
    • (1998) J. Opt. Soc. Am. A , vol.15 , pp. 2609-2619
    • Conchello, J.A.1
  • 25
    • 0028459518 scopus 로고
    • Enhanced 3-D reconstruction from confocal scanning microscope images. II. Depth discrimination vs. signal-to-noise ratio in partially confocal images
    • J. A. Conchello, J. J. Kim, and E. W. Hansen, “Enhanced 3-D reconstruction from confocal scanning microscope images. II. Depth discrimination vs. signal-to-noise ratio in partially confocal images,” Appl. Opt. 33, 3740-3750 (1994).
    • (1994) Appl. Opt , vol.33 , pp. 3740-3750
    • Conchello, J.A.1    Kim, J.J.2    Hansen, E.W.3
  • 26
    • 0023314408 scopus 로고
    • Implementing and accelerating the EM algorithm for positron emission tomography
    • L. Kaufman, “Implementing and accelerating the EM algorithm for positron emission tomography,” IEEE Trans. Med. Imaging MI-6, 37-51 (1987).
    • (1987) IEEE Trans. Med. Imaging MI-6 , pp. 37-51
    • Kaufman, L.1
  • 27
    • 84975664128 scopus 로고
    • Acceleration of maximum-likelihood image restoration for fluorescence microscopy and other noncoherent imagery
    • T. J. Holmes and Y. H. Liu, “Acceleration of maximum-likelihood image restoration for fluorescence microscopy and other noncoherent imagery,” J. Opt. Soc. Am. A 8, 893-907 (1991).
    • (1991) J. Opt. Soc. Am. A , vol.8 , pp. 893-907
    • Holmes, T.J.1    Liu, Y.H.2
  • 28
    • 0005249987 scopus 로고    scopus 로고
    • Acceleration of iterative image restoration algorithms
    • D. S. C. Biggs and M. Andrews, “Acceleration of iterative image restoration algorithms,” Appl. Opt. 36, 1766-1775 (1997).
    • (1997) Appl. Opt , vol.36 , pp. 1766-1775
    • Biggs, D.S.C.1    Andrews, M.2
  • 29
    • 0001731697 scopus 로고
    • Why least squares and maximum entropy: An axiomatic approach to inference for linear inverse problems
    • I. Csiszar, “Why least squares and maximum entropy: An axiomatic approach to inference for linear inverse problems,” Ann. Stat. 19, 2032-2066 (1991).
    • (1991) Ann. Stat , vol.19 , pp. 2032-2066
    • Csiszar, I.1
  • 32
    • 0001283117 scopus 로고
    • Estimating solutions of first kind integral equations with nonnegative constraints and optimal smoothing
    • J. P. Butler, J. A. Reeds, and S. V. Dawson, “Estimating solutions of first kind integral equations with nonnegative constraints and optimal smoothing,” SIAM J. Numer. Anal. 18, 381-397 (1981).
    • (1981) SIAM J. Numer. Anal , vol.18 , pp. 381-397
    • Butler, J.P.1    Reeds, J.A.2    Dawson, S.V.3
  • 33
    • 84967173692 scopus 로고
    • Function minimization by conjugate gradients
    • R. Fletcher and C. M. Reeves, “Function minimization by conjugate gradients,” Comput. J. 7, 149-154 (1964).
    • (1964) Comput. J , vol.7 , pp. 149-154
    • Fletcher, R.1    Reeves, C.M.2
  • 35
    • 0038641529 scopus 로고    scopus 로고
    • On the order of convergence of preconditioned nonlinear conjugate gradient methods
    • M. Al-Baali and R. Fletcher, “On the order of convergence of preconditioned nonlinear conjugate gradient methods,” SIAM J. Sci. Comput. 17, 658-665 (1996).
    • (1996) SIAM J. Sci. Comput , vol.17 , pp. 658-665
    • Al-Baali, M.1    Fletcher, R.2
  • 36
    • 0027568637 scopus 로고
    • Preconditioning methods for improved convergence rates in iterative reconstructions
    • N. H. Clinthorne, T.-S. Pan, P.-C. Chiao, and W. L. Rogers,”Preconditioning methods for improved convergence rates in iterative reconstructions,” IEEE Trans. Med. Imaging 12, 78-83 (1993).
    • (1993) IEEE Trans. Med. Imaging , vol.12 , pp. 78-83
    • Clinthorne, N.H.1    Pan, T.-S.2    Chiao, P.-C.3    Rogers, W.L.4
  • 38
    • 84950590103 scopus 로고
    • Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy
    • F. S. Gibson and F. Lanni, “Experimental test of an analytical model of aberration in an oil-immersion objective lens used in three-dimensional light microscopy,” J. Opt. Soc. Am. A 8, 1601-1613 (1991).
    • (1991) J. Opt. Soc. Am. A , vol.8 , pp. 1601-1613
    • Gibson, F.S.1    Lanni, F.2
  • 39
    • 0028388978 scopus 로고
    • Artifacts in computational optical-sectioning microscopy
    • J. G. McNally, C. Preza, J. A. Conchello, and L. J. Thomas, Jr., “Artifacts in computational optical-sectioning microscopy,” J. Opt. Soc. Am. A 11, 1056-1067 (1994).
    • (1994) J. Opt. Soc. Am. A , vol.11 , pp. 1056-1067
    • McNally, J.G.1    Preza, C.2    Conchello, J.A.3    Thomas, L.J.4
  • 40
    • 58149397562 scopus 로고    scopus 로고
    • Tradeoffs in regularized maximum-likelihood image restoration
    • C. Cogswell, J. A. Conchello, and T. Wilson, eds., Proc. SPIE 2984
    • J. Markham and J. A. Conchello, “Tradeoffs in regularized maximum-likelihood image restoration,” in Three-Dimensional Microscopy: Image Acquisition and Processing IV, C. Cogswell, J. A. Conchello, and T. Wilson, eds., Proc. SPIE 2984, 136-145 (1997).
    • (1997) Three-Dimensional Microscopy: Image Acquisition and Processing IV , pp. 136-145
    • Markham, J.1    Conchello, J.A.2
  • 41
    • 0037842469 scopus 로고
    • (Addison-Wesley, Reading, Mass
    • E. Hecht and A. Zajac, Optics (Addison-Wesley, Reading, Mass., 1974), p. 354.
    • (1974) Optics , pp. 354
    • Hecht, E.1    Zajac, A.2
  • 42
    • 0034146647 scopus 로고    scopus 로고
    • Background estimation in nonlinear image restoration
    • G. M. P. van Kempen and L. J. van Vliet, “Background estimation in nonlinear image restoration,” J. Opt. Soc. Am. A 17, 425-433 (2000).
    • (2000) J. Opt. Soc. Am. A , vol.17 , pp. 425-433
    • Van Kempen, G.M.P.1    Van Vliet, L.J.2
  • 43
    • 0000451036 scopus 로고
    • Nonparametric roughness penalties for probability densities
    • I. J. Good and R. A. Gaskins, “Nonparametric roughness penalties for probability densities,” Biometrika 58, 255-277 (1971).
    • (1971) Biometrika , vol.58 , pp. 255-277
    • Good, I.J.1    Gaskins, R.A.2


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