Routes to covalent catalysis by reactive selection for nascent protein nucleophiles

Journal of the American Chemical Society

Volumn 129, Issue 51, 2007, Pages 16175-16182

  Reshetnyak, Andrey V ^a,b   Armentano, Maria Francesca ^c   Ponomarenko, Natalia A ^a   Vizzuso, Domenica ^c   Durova, Oxana M ^a   Ziganshin, Rustam ^a   Serebryakova, Marina ^d   Govorun, Vadim ^d   Gololobov, Gennady ^e,i   Morse III, Herbert C ^f   Friboulet, Alain ^g   Makker, Sudesh P ^c   Gabibov, Alexander G ^a,b,h   Tramontano, Alfonso ^c  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b MOSCOW STATE UNIVERSITY   (Russian Federation)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d INSTITUTE OF BIOMEDICAL CHEMISTRY   (Russian Federation)

^e UNIVERSITY OF TEXAS   (United States)

^f NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^g UNIVERSITÉ DE TECHNOLOGIE DE COMPIÈGNE   (France)

^h INSTITUTE OF GENE BIOLOGY   (Russian Federation)

ⁱ LEXICON PHARMACEUTICALS INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; ENZYME ACTIVITY; GENE ENCODING; NUCLEOPHILES;

COVALENT INTERMEDIATES; ENZYME CATALYSIS; PROTEIN NUCLEOPHILES;

PROTEINS;

ANTIBODY; PROTEIN; TYROSINE;

ARTICLE; BIOCATALYST; CATALYSIS; COMBINATORIAL LIBRARY; ENZYME ACTIVITY; ENZYME MECHANISM; ENZYME SPECIFICITY; IMMUNOGLOBULIN VARIABLE REGION; MOLECULAR CLONING; MOLECULAR EVOLUTION; PROTEIN PHOSPHORYLATION;

CATALYSIS; MODELS, MOLECULAR; PROTEINS; SUBSTRATE SPECIFICITY;

EID: 37549028838     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja076528m     Document Type: Article

References (33)

1. Fernandez-Gacio, A.; Uguen, M.; Fastrez, J. Trends. Biotechnol. 2003, 21, 408-414.
2. Soumillion, P.; Fastrez, J. Curr. Opin. Biotechnol. 2001, 12, 387-394.
3. Powers, J. C.; Asgian, J. L.; Ekici, O. D.; James, K. E. Chem. Rev. 2002, 102, 4639-4750.
4. Danielsen, S.; Eklund, M.; Deussen, H. J.; Graslund, T.; Nygren, P. A.; Borchert, T. V. Gene 2001, 272, 267-274.
5. Legendre, D.; Laraki, N.; Graslund, T.; Bjornvad, M. E.; Bouchet, M.; Nygren, P. A.; Borchert, T. V.; Fastrez, J. J. Mol. Biol. 2000, 296, 87-102.
6. Baca, M.; Scanlan, T. S.; Stephenson, R. C.; Wells, J. A. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 10063-10068.
7. Fujii, I.; Fukuyama, S.; Iwabuchi, Y.; Tanimura, R. Nat. Biotechnol. 1998, 16, 463-467.
8. Janda, K. D.; Lo, L. C.; Lo, C. H.; Sim, M. M.; Wang, R.; Wong, C. H.; Lerner, R. A. Science 1997, 275, 945-948.
9. Betley, J. R.; Cesaro-Tadic, S.; Mekhalfia, A.; Rickard, J. H.; Denham, H.; Partridge, L. J.; Pluckthun, A.; Blackburn, G. M. Angew. Chem., Int. Ed. 2002, 41, 775-777.
10. Cesaro-Tadic, S.; Lagos, D.; Honegger, A.; Rickard, J. H.; Partridge, L. J.; Blackburn, G. M.; Pluckthun, A. Nat. Biotechnol. 2003, 21, 679-685.
11. Janda, K. D.; Lo, C. H.; Li, T.; Barbas, C. F., 3rd; Wirsching, P.; Lerner, R. A. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 2532-2536.
12. Gao, C.; Lin, C. H.; Lo, C. H.; Mao, S.; Wirsching, P.; Lerner, R. A.; Janda, K. D. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 11777-11782.
13. Wagner, J.; Lerner, R. A.; Barbas, C. F., 3rd. Science 1995, 270, 1797-1800.
14. Thayer, M. M.; Olender, E. H.; Arvai, A. S.; Koike, C. K.; Canestrelli, I. L.; Stewart, J. D.; Benkovic, S. J.; Getzoff, E. D.; Roberts, V. A. J. Mol. Biol. 1999, 291, 329-345.
15. Zhou, G. W.; Guo, J.; Huang, W.; Fletterick, R. J.; Scanlan, T. S. Science 1994, 265, 1059-1064.
16. Wirsching, P.; Ashley, J. A.; Benkovic, S. J.; Janda, K. D.; Lerner, R. A. Science 1991, 252, 680-685.
17. Tramontano, A.; Janda, K. D.; Lerner, R. A. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 6736-6740.
18. Karlstrom, A.; Zhong, G.; Rader, C.; Larsen, N. A.; Heine, A.; Fuller, R.; List, B.; Tanaka, F.; Wilson, I. A.; Barbas, C. F., 3rd.; Lerner, R. A. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 3878-3883.
19. Tramontano, A.; Ivanov, B.; Gololobov, G.; Paul, S. Appl. Biochem. Biotechnol. 2000, 83, 233-242.
20. Oleksyszyn, J.; Powers, J. C. Methods Enzymol. 1994, 244, 423-441.
21. Griffiths, A. D.; Williams, S. C.; Hartley, O.; Tomlinson, I. M.; Waterhouse, P.; Crosby, W. L.; Kontermann, R. E.; Jones, P. T.; Low, N. M.; Allison, T. J.; et al. EMBO J. 1994, 13, 3245-3260.
22. Marks, J. D.; Bradbury, A. Methods Mol. Biol. 2004, 248, 161-176.
23. Hixson, C. S.; Krebs, E. G. J. Biol. Chem. 1979, 254, 7509-7514.
24. Kitz, R.; Wilson, I. B. J. Biol. Chem. 1962, 237, 3245-3249.
25. Schwede, T.; Kopp, J.; Guex, N.; Peitsch, M. C. Nucleic Acids Res. 2003, 31, 3381-3385.
26. Goletz, S.; Christensen, P. A.; Kristensen, P.; Blohm, D.; Tomlinson, I.; Winter, G.; Karsten, U. J. Mol. Biol. 2002, 315, 1087-1097.
27. Kabat, E. A.; National Institutes of Health (U.S.); Columbia University. Sequences of proteins of immunological interest, 5th ed.; U.S. Dept. of Health and Human Services Public Health Service National Institutes of Health: Bethesda, MD, 1991.
28. Fersht, A. Enzyme structure and mechanism, 2nd ed.; W. H. Freeman: New York, 1985.
29. Breslow, R. Artificial enzymes; Wiley-VCH: Weinheim, 2005.
30. Lerner, R. A.; Benkovic, S. J.; Schultz, P. G. Science 1991, 252, 659-667.
31. Paul, S.; Tramontano, A.; Gololobov, G.; Zhou, Y. X.; Taguchi, H.; Karle, S.; Nishiyama, Y.; Planque, S.; George, S. J. Biol. Chem. 2001, 276, 28314-28320.
32. Ponomarenko, N. A.; Durova, O. M.; Vorobiev, I. I.; Belogurov, A. A., Jr.; Kurkova, I. N.; Petrenko, A. G.; Telegin, G. B.; Suchkov, S. V.; Kiselev, S. L.; Lagarkova, M. A.; et al. PNAS 2006, 103, 281-286.
33. Tawfik, D. S.; Chap, R.; Green, B. S.; Sela, M.; Eshhar, Z. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 2145-2149.